|
Search for potential binding sites with MatInspector V2.2Commercial users please contact Genomatix Software at genomatix@gsf.de. MatInspector professional from Genomatix! MatInspector ResultMatInspector Release 2.2 Oktober 1997 Fri Oct 29 20:25:00 1999 Solution parameters: ~~~~~~~~~~~~~~~~~~~~ sequence file: BCM_Search_Launcher_66.seq core sim: 0.80 matrix sim: 0.85 Explanation for column output: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -> Matrix positions correspond to sense strand numbering, but all sequences are given in 5'-3' direction. -> n/a in column 'core simil.' indicates, that no core search was conducted. -> Capital letters within the sequence indicate the core string. matrix | matrix | core | matrix | sequence name | position(str)| simil. | simil. | ----------------------------------------------------------------------- Inspecting sequence BCM_Search_Launcher_ [?] (1 - 225): V$IK2_01 | 136 (-) | 1.000 | 0.975 | cggtGGGAatgc V$AP1_Q4 | 43 (-) | 1.000 | 0.974 | agTGACtgagg V$LMO2COM_02 | 50 (-) | 1.000 | 0.968 | gaGATAgtg V$IK1_01 | 135 (-) | 1.000 | 0.964 | cggtGGGAatgcc V$MYOD_Q6 | 82 (+) | 0.872 | 0.964 | gcCAACtgac V$MYOD_Q6 | 22 (-) | 0.915 | 0.962 | caCATCtggc V$AP1FJ_Q2 | 43 (-) | 1.000 | 0.962 | agTGACtgagg V$AP1_Q2 | 43 (-) | 1.000 | 0.959 | agTGACtgagg V$GATA1_02 | 48 (-) | 1.000 | 0.950 | ccagaGATAgtgac V$DELTAEF1_01 | 179 (-) | 1.000 | 0.944 | gcccACCTcgc V$LYF1_01 | 5 (-) | 1.000 | 0.937 | tctGGGAga V$GATA1_04 | 48 (-) | 1.000 | 0.933 | cagaGATAgtgac V$AP1FJ_Q2 | 126 (+) | 1.000 | 0.930 | gcTGACaccgg V$CMYB_01 | 80 (-) | 1.000 | 0.928 | ctgagggtcaGTTGgctc V$NF1_Q6 | 181 (-) | 1.000 | 0.927 | actTGGCctgcccacctc V$IK2_01 | 3 (-) | 1.000 | 0.925 | ctctGGGAgaat V$RORA1_01 | 203 (-) | 1.000 | 0.924 | ccacgaaGGTCaa V$ER_Q6 | 193 (+) | 1.000 | 0.917 | ccaagtattctTGACcttc V$AP1_Q2 | 126 (+) | 1.000 | 0.915 | gcTGACaccgg V$NF1_Q6 | 71 (-) | 1.000 | 0.911 | agtTGGCtcaggcatcgc V$GATA_C | 47 (-) | 0.891 | 0.910 | aGATAGtgact V$TH1E47_01 | 19 (-) | 1.000 | 0.908 | cctcacatCTGGcagt V$IK3_01 | 135 (-) | 1.000 | 0.907 | cggtgGGAAtgcc V$AP1FJ_Q2 | 86 (+) | 1.000 | 0.904 | acTGACcctca V$GATA1_03 | 48 (-) | 1.000 | 0.903 | ccagaGATAgtgac V$USF_Q6 | 97 (-) | 0.864 | 0.897 | ctCACAggtc V$AP1FJ_Q2 | 110 (-) | 1.000 | 0.896 | tgTGACcggct V$LMO2COM_01 | 21 (+) | 0.822 | 0.896 | tgcCAGAtgtga V$AP1_Q2 | 86 (+) | 1.000 | 0.895 | acTGACcctca V$TCF11_01 | 48 (+) | 1.000 | 0.893 | GTCActatctctg V$VMYB_02 | 82 (+) | 0.820 | 0.891 | gccAACTga V$BARBIE_01 | 142 (-) | 1.000 | 0.890 | ggagAAAGgcggtgg V$LMO2COM_01 | 81 (-) | 0.804 | 0.888 | ggtCAGTtggct V$NF1_Q6 | 11 (-) | 1.000 | 0.885 | atcTGGCagtttgcctct V$TH1E47_01 | 5 (-) | 1.000 | 0.882 | gtttgcctCTGGgaga V$AP2_Q6 | 6 (+) | 0.905 | 0.880 | ctCCCAgaggca V$AP1_C | 44 (+) | 0.868 | 0.880 | cTCAGTCAc V$TCF11_01 | 115 (+) | 1.000 | 0.876 | GTCAcaccgtggc V$GKLF_01 | 148 (-) | 0.937 | 0.873 | gcacaggagaAAGG V$RORA1_01 | 87 (-) | 1.000 | 0.870 | gtctgagGGTCag V$E2_Q6 | 103 (+) | 1.000 | 0.869 | tgagccgagcCGGTca V$TCF11_01 | 195 (-) | 1.000 | 0.866 | GTCAagaatactt V$VMYB_01 | 82 (+) | 0.876 | 0.866 | gccAACTgac V$TCF11_01 | 119 (-) | 1.000 | 0.865 | GTCAgccacggtg V$ER_Q6 | 77 (+) | 1.000 | 0.863 | cctgagccaacTGACcctc V$NFKAPPAB65_01 | 134 (+) | 0.826 | 0.863 | cggcatTCCC V$TAL1ALPHAE47_01 | 19 (+) | 1.000 | 0.861 | actgcCAGAtgtgagg V$AP1_C | 44 (-) | 0.837 | 0.861 | gTGACTGAg V$AP1_Q4 | 126 (+) | 1.000 | 0.860 | gcTGACaccgg V$TCF11_01 | 79 (-) | 1.000 | 0.858 | GTCAgttggctca V$TAL1BETAE47_01 | 19 (+) | 1.000 | 0.857 | actgcCAGAtgtgagg V$NF1_Q6 | 121 (+) | 1.000 | 0.856 | ccgTGGCtgacaccggca V$DELTAEF1_01 | 202 (+) | 1.000 | 0.854 | cttgACCTtcg V$CETS1P54_01 | 150 (-) | 0.926 | 0.851 | acAGGAgaaa A total of 225 basepairs was scanned. In 0 seq. 0 matches to the matrix V$AHRARNT_01 (re: 0.81) were found. In 0 seq. 0 matches to the matrix V$AHRARNT_02 (re: < 0.01) were found. In 0 seq. 0 matches to the matrix V$AHR_01 (re: < 0.01) were found. In 1 seq. 4 matches to the matrix V$AP1FJ_Q2 (re: 2.45) were found. In 1 seq. 2 matches to the matrix V$AP1_C (re: 1.08) were found. In 1 seq. 3 matches to the matrix V$AP1_Q2 (re: 1.82) were found. In 1 seq. 2 matches to the matrix V$AP1_Q4 (re: 2.48) were found. In 1 seq. 1 matches to the matrix V$AP2_Q6 (re: 4.78) were found. In 0 seq. 0 matches to the matrix V$AP4_01 (re: 0.01) were found. In 0 seq. 0 matches to the matrix V$AP4_Q5 (re: 0.96) were found. In 0 seq. 0 matches to the matrix V$AP4_Q6 (re: 0.50) were found. In 0 seq. 0 matches to the matrix V$ARNT_01 (re: 0.69) were found. In 0 seq. 0 matches to the matrix V$ARP1_01 (re: 0.07) were found. In 0 seq. 0 matches to the matrix V$ATF_01 (re: 0.34) were found. In 1 seq. 1 matches to the matrix V$BARBIE_01 (re: 0.56) were found. In 0 seq. 0 matches to the matrix V$BRACH_01 (re: < 0.01) were found. In 0 seq. 0 matches to the matrix V$BRN2_01 (re: 0.99) were found. In 0 seq. 0 matches to the matrix V$CAAT_01 (re: 2.21) were found. In 0 seq. 0 matches to the matrix V$CAAT_C (re: < 0.01) were found. In 0 seq. 0 matches to the matrix V$CDPCR3HD_01 (re: 3.06) were found. In 0 seq. 0 matches to the matrix V$CDPCR3_01 (re: 0.12) were found. In 0 seq. 0 matches to the matrix V$CDP_01 (re: 0.04) were found. In 0 seq. 0 matches to the matrix V$CDP_02 (re: 0.12) were found. In 0 seq. 0 matches to the matrix V$CEBPB_01 (re: 2.07) were found. In 0 seq. 0 matches to the matrix V$CEBP_C (re: 0.27) were found. In 1 seq. 1 matches to the matrix V$CETS1P54_01 (re: 1.53) were found. In 0 seq. 0 matches to the matrix V$CHOP_01 (re: 1.10) were found. In 0 seq. 0 matches to the matrix V$CLOX_01 (re: 0.12) were found. In 1 seq. 1 matches to the matrix V$CMYB_01 (re: 2.02) were found. In 0 seq. 0 matches to the matrix V$COMP1_01 (re: 0.66) were found. In 0 seq. 0 matches to the matrix V$COUP_01 (re: 0.19) were found. In 0 seq. 0 matches to the matrix V$CP2_01 (re: 0.39) were found. In 0 seq. 0 matches to the matrix V$CREBP1CJUN_01 (re: 0.22) were found. In 0 seq. 0 matches to the matrix V$CREBP1_01 (re: 0.15) were found. In 0 seq. 0 matches to the matrix V$CREBP1_Q2 (re: 0.09) were found. In 0 seq. 0 matches to the matrix V$CREB_01 (re: 0.40) were found. In 0 seq. 0 matches to the matrix V$CREB_02 (re: 1.12) were found. In 0 seq. 0 matches to the matrix V$CREB_Q2 (re: 0.34) were found. In 0 seq. 0 matches to the matrix V$CREB_Q4 (re: 0.34) were found. In 0 seq. 0 matches to the matrix V$CREL_01 (re: 2.74) were found. In 1 seq. 2 matches to the matrix V$DELTAEF1_01 (re: 2.42) were found. In 0 seq. 0 matches to the matrix V$E2F_01 (re: < 0.01) were found. In 0 seq. 0 matches to the matrix V$E2F_02 (re: 0.13) were found. In 0 seq. 0 matches to the matrix V$E2F_Q6 (re: 0.06) were found. In 0 seq. 0 matches to the matrix V$E2_01 (re: 0.29) were found. In 1 seq. 1 matches to the matrix V$E2_Q6 (re: 0.40) were found. In 0 seq. 0 matches to the matrix V$E47_01 (re: 0.11) were found. In 0 seq. 0 matches to the matrix V$E47_02 (re: 0.27) were found. In 0 seq. 0 matches to the matrix V$E4BP4_01 (re: 0.07) were found. In 0 seq. 0 matches to the matrix V$EGR1_01 (re: 0.03) were found. In 0 seq. 0 matches to the matrix V$EGR2_01 (re: 0.03) were found. In 0 seq. 0 matches to the matrix V$EGR3_01 (re: 0.01) were found. In 0 seq. 0 matches to the matrix V$ELK1_01 (re: 0.06) were found. In 1 seq. 2 matches to the matrix V$ER_Q6 (re: 1.73) were found. In 0 seq. 0 matches to the matrix V$EVI1_01 (re: < 0.01) were found. In 0 seq. 0 matches to the matrix V$EVI1_02 (re: 0.02) were found. In 0 seq. 0 matches to the matrix V$EVI1_03 (re: < 0.01) were found. In 0 seq. 0 matches to the matrix V$EVI1_04 (re: 0.92) were found. In 0 seq. 0 matches to the matrix V$EVI1_05 (re: 0.16) were found. In 0 seq. 0 matches to the matrix V$EVI1_06 (re: 0.02) were found. In 0 seq. 0 matches to the matrix V$FREAC2_01 (re: 0.11) were found. In 0 seq. 0 matches to the matrix V$FREAC3_01 (re: 0.02) were found. In 0 seq. 0 matches to the matrix V$FREAC4_01 (re: < 0.01) were found. In 0 seq. 0 matches to the matrix V$FREAC7_01 (re: 0.52) were found. In 1 seq. 1 matches to the matrix V$GATA1_02 (re: 2.27) were found. In 1 seq. 1 matches to the matrix V$GATA1_03 (re: 1.80) were found. In 1 seq. 1 matches to the matrix V$GATA1_04 (re: 1.82) were found. In 1 seq. 1 matches to the matrix V$GATA_C (re: 2.62) were found. In 0 seq. 0 matches to the matrix V$GC_01 (re: 2.12) were found. In 0 seq. 0 matches to the matrix V$GFI1_01 (re: 1.57) were found. In 1 seq. 1 matches to the matrix V$GKLF_01 (re: 4.76) were found. In 0 seq. 0 matches to the matrix V$GRE_C (re: 0.06) were found. In 0 seq. 0 matches to the matrix V$HEN1_01 (re: 0.12) were found. In 0 seq. 0 matches to the matrix V$HEN1_02 (re: 0.07) were found. In 0 seq. 0 matches to the matrix V$HFH1_01 (re: 0.12) were found. In 0 seq. 0 matches to the matrix V$HFH2_01 (re: 2.03) were found. In 0 seq. 0 matches to the matrix V$HFH3_01 (re: 0.31) were found. In 0 seq. 0 matches to the matrix V$HFH8_01 (re: 0.23) were found. In 0 seq. 0 matches to the matrix V$HLF_01 (re: 1.69) were found. In 0 seq. 0 matches to the matrix V$HNF1_01 (re: 0.51) were found. In 0 seq. 0 matches to the matrix V$HNF1_C (re: 0.11) were found. In 0 seq. 0 matches to the matrix V$HNF3B_01 (re: 1.45) were found. In 0 seq. 0 matches to the matrix V$HOX13_01 (re: 0.02) were found. In 1 seq. 1 matches to the matrix V$IK1_01 (re: 0.86) were found. In 1 seq. 2 matches to the matrix V$IK2_01 (re: 3.95) were found. In 1 seq. 1 matches to the matrix V$IK3_01 (re: 0.16) were found. In 0 seq. 0 matches to the matrix V$IRF1_01 (re: 0.03) were found. In 0 seq. 0 matches to the matrix V$IRF2_01 (re: < 0.01) were found. In 0 seq. 0 matches to the matrix V$ISRE_01 (re: < 0.01) were found. In 1 seq. 2 matches to the matrix V$LMO2COM_01 (re: 1.11) were found. In 1 seq. 1 matches to the matrix V$LMO2COM_02 (re: 2.02) were found. In 1 seq. 1 matches to the matrix V$LYF1_01 (re: 4.29) were found. In 0 seq. 0 matches to the matrix V$MAX_01 (re: 0.11) were found. In 0 seq. 0 matches to the matrix V$MEF2_01 (re: < 0.01) were found. In 0 seq. 0 matches to the matrix V$MEF2_02 (re: 0.08) were found. In 0 seq. 0 matches to the matrix V$MEF2_03 (re: 0.02) were found. In 0 seq. 0 matches to the matrix V$MEF2_04 (re: < 0.01) were found. In 0 seq. 0 matches to the matrix V$MIF1_01 (re: 0.01) were found. In 0 seq. 0 matches to the matrix V$MYCMAX_01 (re: 0.05) were found. In 0 seq. 0 matches to the matrix V$MYCMAX_02 (re: 1.67) were found. In 0 seq. 0 matches to the matrix V$MYOD_01 (re: 0.21) were found. In 1 seq. 2 matches to the matrix V$MYOD_Q6 (re: 0.96) were found. In 0 seq. 0 matches to the matrix V$MYOGNF1_01 (re: < 0.01) were found. In 0 seq. 0 matches to the matrix V$MZF1_01 (re: 3.84) were found. In 1 seq. 4 matches to the matrix V$NF1_Q6 (re: 4.11) were found. In 0 seq. 0 matches to the matrix V$NFAT_Q6 (re: 1.91) were found. In 0 seq. 0 matches to the matrix V$NFE2_01 (re: 0.12) were found. In 0 seq. 0 matches to the matrix V$NFKAPPAB50_01 (re: 0.05) were found. In 1 seq. 1 matches to the matrix V$NFKAPPAB65_01 (re: 0.09) were found. In 0 seq. 0 matches to the matrix V$NFKAPPAB_01 (re: 0.42) were found. In 0 seq. 0 matches to the matrix V$NFKB_C (re: 0.05) were found. In 0 seq. 0 matches to the matrix V$NFKB_Q6 (re: 0.28) were found. In 0 seq. 0 matches to the matrix V$NFY_01 (re: 0.49) were found. In 0 seq. 0 matches to the matrix V$NFY_C (re: < 0.01) were found. In 0 seq. 0 matches to the matrix V$NFY_Q6 (re: 0.70) were found. In 0 seq. 0 matches to the matrix V$NGFIC_01 (re: 0.03) were found. In 0 seq. 0 matches to the matrix V$NKX25_01 (re: 0.79) were found. In 0 seq. 0 matches to the matrix V$NKX25_02 (re: 0.51) were found. In 0 seq. 0 matches to the matrix V$NMYC_01 (re: 1.64) were found. In 0 seq. 0 matches to the matrix V$NRF2_01 (re: 0.16) were found. In 0 seq. 0 matches to the matrix V$NRSF_01 (re: < 0.01) were found. In 0 seq. 0 matches to the matrix V$OCT1_01 (re: 0.04) were found. In 0 seq. 0 matches to the matrix V$OCT1_02 (re: 2.34) were found. In 0 seq. 0 matches to the matrix V$OCT1_05 (re: 0.03) were found. In 0 seq. 0 matches to the matrix V$OCT1_06 (re: 0.97) were found. In 0 seq. 0 matches to the matrix V$OCT1_07 (re: 0.04) were found. In 0 seq. 0 matches to the matrix V$OCT1_Q6 (re: 4.82) were found. In 0 seq. 0 matches to the matrix V$OCT_C (re: 0.05) were found. In 0 seq. 0 matches to the matrix V$OLF1_01 (re: 0.03) were found. In 0 seq. 0 matches to the matrix V$P53_01 (re: < 0.01) were found. In 0 seq. 0 matches to the matrix V$PADS_C (re: 0.52) were found. In 0 seq. 0 matches to the matrix V$PAX5_01 (re: 0.04) were found. In 0 seq. 0 matches to the matrix V$PAX5_02 (re: < 0.01) were found. In 0 seq. 0 matches to the matrix V$PAX6_01 (re: 1.24) were found. In 0 seq. 0 matches to the matrix V$PBX1_02 (re: 0.05) were found. In 0 seq. 0 matches to the matrix V$POLY_C (re: 0.02) were found. In 0 seq. 0 matches to the matrix V$PPARA_01 (re: < 0.01) were found. In 0 seq. 0 matches to the matrix V$RFX1_01 (re: 0.94) were found. In 0 seq. 0 matches to the matrix V$RFX1_02 (re: 0.95) were found. In 1 seq. 2 matches to the matrix V$RORA1_01 (re: 0.19) were found. In 0 seq. 0 matches to the matrix V$RORA2_01 (re: 0.01) were found. In 0 seq. 0 matches to the matrix V$RREB1_01 (re: 0.03) were found. In 0 seq. 0 matches to the matrix V$RSRFC4_01 (re: 0.02) were found. In 0 seq. 0 matches to the matrix V$R_01 (re: 0.04) were found. In 0 seq. 0 matches to the matrix V$S8_01 (re: 0.67) were found. In 0 seq. 0 matches to the matrix V$SEF1_C (re: < 0.01) were found. In 0 seq. 0 matches to the matrix V$SOX5_01 (re: 1.10) were found. In 0 seq. 0 matches to the matrix V$SP1_Q6 (re: 1.70) were found. In 0 seq. 0 matches to the matrix V$SREBP1_01 (re: 0.21) were found. In 0 seq. 0 matches to the matrix V$SREBP1_02 (re: < 0.01) were found. In 0 seq. 0 matches to the matrix V$SRF_01 (re: < 0.01) were found. In 0 seq. 0 matches to the matrix V$SRF_C (re: 0.08) were found. In 0 seq. 0 matches to the matrix V$SRF_Q6 (re: 0.16) were found. In 0 seq. 0 matches to the matrix V$SRY_02 (re: 3.94) were found. In 0 seq. 0 matches to the matrix V$STAF_01 (re: 0.02) were found. In 0 seq. 0 matches to the matrix V$STAF_02 (re: 0.12) were found. In 0 seq. 0 matches to the matrix V$STAT1_01 (re: < 0.01) were found. In 0 seq. 0 matches to the matrix V$STAT3_01 (re: < 0.01) were found. In 0 seq. 0 matches to the matrix V$STAT_01 (re: 0.48) were found. In 0 seq. 0 matches to the matrix V$T3R_01 (re: 0.03) were found. In 1 seq. 1 matches to the matrix V$TAL1ALPHAE47_01 (re: 0.14) were found. In 1 seq. 1 matches to the matrix V$TAL1BETAE47_01 (re: 0.11) were found. In 0 seq. 0 matches to the matrix V$TAL1BETAITF2_01 (re: 0.06) were found. In 0 seq. 0 matches to the matrix V$TATA_01 (re: 5.33) were found. In 0 seq. 0 matches to the matrix V$TATA_C (re: 0.30) were found. In 0 seq. 0 matches to the matrix V$TAXCREB_01 (re: 0.06) were found. In 0 seq. 0 matches to the matrix V$TAXCREB_02 (re: < 0.01) were found. In 0 seq. 0 matches to the matrix V$TCF11MAFG_01 (re: 0.06) were found. In 1 seq. 5 matches to the matrix V$TCF11_01 (re: 4.63) were found. In 1 seq. 2 matches to the matrix V$TH1E47_01 (re: 1.95) were found. In 0 seq. 0 matches to the matrix V$TST1_01 (re: 4.93) were found. In 0 seq. 0 matches to the matrix V$USF_01 (re: 1.15) were found. In 0 seq. 0 matches to the matrix V$USF_C (re: 2.19) were found. In 1 seq. 1 matches to the matrix V$USF_Q6 (re: 2.52) were found. In 0 seq. 0 matches to the matrix V$VBP_01 (re: 3.78) were found. In 0 seq. 0 matches to the matrix V$VJUN_01 (re: < 0.01) were found. In 0 seq. 0 matches to the matrix V$VMAF_01 (re: 0.99) were found. In 1 seq. 1 matches to the matrix V$VMYB_01 (re: 2.29) were found. In 1 seq. 1 matches to the matrix V$VMYB_02 (re: 1.04) were found. In 0 seq. 0 matches to the matrix V$XBP1_01 (re: 0.34) were found. In 0 seq. 0 matches to the matrix V$XFD1_01 (re: 0.07) were found. In 0 seq. 0 matches to the matrix V$XFD2_01 (re: 0.07) were found. In 0 seq. 0 matches to the matrix V$XFD3_01 (re: 0.04) were found. In 0 seq. 0 matches to the matrix V$YY1_02 (re: 0.13) were found. In 0 seq. 0 matches to the matrix V$ZID_01 (re: 0.33) were found. Don't forget to cite: Quandt, K. Frech, K. Karas, H. Wingender, E. and Werner, T. MatInd and MatInspector - New fast and versatile tools for detection of consensus matches in nucleotide sequence data Nucleic Acids Research 23, 4878-4884 (1995) Back to the MatInspector input form 
Still too many matches???Then please test the enhanced MatInspector professional available at Genomatix Software GmbH For the next step of your analysis, please have a look at FastM, a program to search two correlated binding sites in your sequence or in a GenBank section!
If you encounter any problems, please contact Quandt@gsf.de |
 |
||||
|
||||
|
||||
![[BIODV-Home]](http://www.gsf.de/biodv/Gif/biodv_klein_logo.gif){kind=logo}
![[GSF-Home]](http://www.gsf.de/Gif/gsf_engl.gif)
![[Transfac-Home]](http://www.gsf.de/biodv/Gif/wwwlogo42.gif)
