Pol3scan Results
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Pol3scan
Input file: /usr/tmp/baaa12121
Cut-off value (total): -31.80
Cut-off value (A box): -28.00
Cut-off value (B box): -14.14
Ref:
Pavesi, A., Conterio, F., Bolchi, A., Dieci, G. and Ottonello, S., (1994)
Identification of new eucariotic tRNA genes in genomic DNA databases by a
multistep weight matrix analysis of transcriptional control regions,
Nucleic Acids Res. 22, 1247-1256
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sequence name: unspecified
strand: direct
B box signal:2125 2135 ; agttcgaatct ; score: -6.05
A box signal:2079 2098 ; gtagctcagtt-ggtt-agagc ; score: -10.45
Term. signal: not found ; score (A-B): -16.49
Prediction: ---- tRNA-like element ----
Termination signal not found
strand: direct
B box signal:2230 2240 ; ggttcgatccc ; score: -3.21
A box signal:2079 2098 ; gtagctcagtt-ggtt-agagc ; score: -15.43
Term. signal: not found ; score (A-B): -18.64
Prediction: ---- tRNA-like element ----
Termination signal not found
Sequences searched: 1 ( 5783 bp. both strands)
Predicted tRNAs: 0
Predicted tRNA-like elements: 2