Search Parameters| Title |
def |
|
|---|
| DNA Sequence |
seq |
GAATTCTCCCAGAGGCAAACTGCCAGATGTGAGGCTGCTCTTCCTCAGTC... |
|---|
| Search TRANSFAC Strings |
dbs.ops |
0 |
|---|
| Search TRANSFAC Matrices |
dbt.ops |
1 |
|---|
| Search IMD Matrices |
dbi.ops |
0 |
|---|
| Search CBIL Matrices |
dbc.ops |
1 |
|---|
| TRANSFAC String Matrices |
dbp.ops |
1 |
|---|
| Minimum lg likelihood ratio |
lglh |
12.0 |
|---|
| Group Selection |
grpThr |
|
|---|
| Maximum lg-likelihood deficit |
mlld |
6 |
|---|
| Minimum core similarity |
csi |
0.75 |
|---|
| Minimum matrix similarity |
msi |
|
|---|
| Secondary Lg-Likelihood Deficit |
cthresh |
3.0 |
|---|
| Count significance threshold |
pcst |
1.0e-2 |
|---|
| Selected? |
pcst.ops |
0 |
|---|
| Use only core positions for TRANSFAC strings |
core |
1 |
|---|
| Pseudocounts |
pcw |
0.10 |
|---|
| Group Selection |
bkgGrp |
uf |
|---|
| Use A-T Content (%) |
at |
50.0 |
|---|
| Explicit A,C,G,T Distribution |
ep |
0.25,0.25,0.25,0.25 |
|---|
| Handle Ambiguous Bases Using |
am |
Expected Score |
|---|
|
