Block Maker Results

• Introduction
• Warnings
• Block Maps [ About Block Maps]
• BLOCKS from MOTIF
• COBBLER sequence from MOTIF [ About COBBLER]
• BLOCKS from GIBBS
• COBBLER sequence from GIBBS [ About COBBLER]
• Blocks Formatted for Searching Programs
  • BLIMPS Searchable BLOCKS from MOTIF [ About BLIMPS] [Download BLIMPS]
  • BLIMPS Searchable BLOCKS from GIBBS
  • MAST Searchable PSSMS from MOTIF [ About MAST]
  • MAST Searchable PSSMS from GIBBS

BLOCKS from MOTIFLogos:  [Postscript][PDF][GIF]  [About Logos]  [Map]
Tree:   [Data][XBitmap][Postscript][PDF][GIF][Newick]  [About Trees]
Structures: [3D Blocks]  [About 3D Blocks]
Search: [LAMA]  [About LAMA]  [MAST]  [About MAST]
Primers:[CODEHOP]  [About CODEHOP]

              **BLOCKS from MOTIF**
 
>unknown sequence number   1  190 aa  family
5 sequences are included in 3 blocks

            
                gi 
 sequence_number__ 
 sequence_number__ 
 sequence_number__ 
 sequence_number__ 

            unknownA, width = 50                                    
                gi    30 VQPNFQQDKFLGRWFSAGLASNSSWLREKKAALSMCKSVVAPATDGGLNL
 sequence_number__    30 VQPNFQQDKFLGRWYSAGLASNSSWFREKKELLFMCQTVVAPSTEGGLNL
 sequence_number__    24 VQPNFQPDKFLGRWFSAGLASNSSWLQEKKAALSMCKSVVAPAADGGFNL
 sequence_number__    41 VQPDFQKEKVLGKWYGIGLASNSNWFKDRKSHMKMCTTIITPTADGNLEV
 sequence_number__    46 VQPNFQQDKFLGRWYSAGLASNSSWFREKKAVLYMCKTVVAPSTEGGLNL

            unknownB, width = 29                       
                gi  (   7)    87 NQCETRTMLLQPAGSLGSYSYRSPHWGST
 sequence_number__  (  -9)    87 NQCETKVMVLQPAGVPGQYTYNSPHWGSF
 sequence_number__  (  -9)    87 NQCETKVMVLQPAGVPGQYTYNSPHWGSF
 sequence_number__  (  -9)    87 NQCETKVMVLQPAGVPGQYTYNSPHWGSF
 sequence_number__  (  -9)    87 NQCETKVMVLQPAGVPGQYTYNSPHWGSF

            unknownC, width = 53                                               
                gi  (  21)   137 KGPGEDFRMATLYSRTQTPRAELKEKFTAFCKAQGFTEDTIVFLPQTDKCMTE
 sequence_number__  (  21)   137 KGPGQDFRMATLYSRAQLLKEELKEKFITFSKDQGLTEEDIVFLPQPDKCIQE
 sequence_number__  (  21)   137 KGPGQDFRMATLYSRAQLLKEELKEKFITFSKDQGLTEEDIVFLPQPDKCIQE
 sequence_number__  (  21)   137 KGPGQDFRMATLYSRAQLLKEELKEKFITFSKDQGLTEEDIVFLPQPDKCIQE
 sequence_number__  (  21)   137 KGPGQDFRMATLYSRAQLLKEELKEKFITFSKDQGLTEEDIVFLPQPDKCIQE

COBBLER sequence from MOTIF>unknown gi from 1 to 190 with embedded consensus blocks
mathhtlwmglallgvlgdlqaapeaqvsVQPNFQQDKFLGRWYSAGLASNSSWFREKKAHLSMCKTVVAPSTDGGLNLt
stflrkNQCETKTMVLQPAGSLGGYTYKSPHWGSTysvsvvetdydqyallysqgsKGPGEDFRMATLYSRTQTLRPELK
EKFTTFCKAQGLTEDNIVFLPQTDKCMTEq
 
 
[Blast Search] of COBBLER sequence vs non-redundant protein database using
default parameters
[GAP-Blast Search] of COBBLER sequence vs non-redundant protein database using
default parameters
[PSI-Blast Search] of COBBLER sequence vs non-redundant protein database using
default parameters

BLOCKS from GIBBSLogos:  [Postscript][PDF][GIF]  [About Logos]  [Map]
Tree:   [Data][XBitmap][Postscript][PDF][GIF][Newick]  [About Trees]
Structures: [3D Blocks]  [About 3D Blocks]
Search: [LAMA]  [About LAMA]  [MAST]  [About MAST]
Primers:[CODEHOP]  [About CODEHOP]

              **BLOCKS from GIBBS**
 
>unknown sequence number   1  190 aa  family
5 sequences are included in 1 blocks

            unknown, width = 18     
                gi    31 QPNFQQDKFLGRWFSAGL
 sequence_number__    31 QPNFQQDKFLGRWYSAGL
 sequence_number__     0 XAASEQENCENMDERAAA
 sequence_number__     0 XAASEQENCENMDERAAM
 sequence_number__     0 XAASEQENCENMDERAAM

COBBLER sequence from GIBBS>unknown sequence_number__ from 1 to 48 with embedded consensus blocks
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQPNFQQDNCEGRWYRAGL



[Blast Search] of COBBLER sequence vs non-redundant protein database using
default parameters
[GAP-Blast Search] of COBBLER sequence vs non-redundant protein database using
default parameters
[PSI-Blast Search] of COBBLER sequence vs non-redundant protein database using
default parameters