Number of segment pairs = 6; number of pairwise comparisons = 2 '+' means given segment; '-' means reverse complement OVERLAPS CONTAINMENTS ******************* Contig 1 ******************** ONE+ TWO+ THREE+ DETAILED DISPLAY OF CONTIGS ******************* Contig 1 ******************** . : . : . : . : . : . : ONE+ GGATCTCCCCTAGCATACCTAGCAATATTAATCACTCAGATAATTAGGCACTGTCCTATA ____________________________________________________________ consensus GGATCTCCCCTAGCATACCTAGCAATATTAATCACTCAGATAATTAGGCACTGTCCTATA . : . : . : . : . : . : ONE+ TTTTTGTAAGATTTATAACTTTAAATTTTTCATTACATATTTTTTTCCAGTGACTTTGAG ____________________________________________________________ consensus TTTTTGTAAGATTTATAACTTTAAATTTTTCATTACATATTTTTTTCCAGTGACTTTGAG . : . : . : . : . : . : ONE+ ACTTATCTTACTTTTTAGTGTGTTAGGTTTATCAGTGGTGATTTTATTGTTATACATGAC ____________________________________________________________ consensus ACTTATCTTACTTTTTAGTGTGTTAGGTTTATCAGTGGTGATTTTATTGTTATACATGAC . : . : . : . : . : . : ONE+ CTCATAATAGTTGTTTTTTCTTTCAGTACATTTGTTTTATGTTTAAATTTTTATATTTAC ____________________________________________________________ consensus CTCATAATAGTTGTTTTTTCTTTCAGTACATTTGTTTTATGTTTAAATTTTTATATTTAC . : . : . : . : . : . : ONE+ ATGATTAACTTATGCAAATTATATGTTTAAAAATCTGTTTTATTGCCAAAGTTGTAAGGA ____________________________________________________________ consensus ATGATTAACTTATGCAAATTATATGTTTAAAAATCTGTTTTATTGCCAAAGTTGTAAGGA . : . : . : . : . : . : ONE+ GGGAGTCAAAGTTCCTAGTCATTTATTTATTAGAATTATTCACAGGAGTGACAACGTGCG TWO+ ACAACGTGCG ____________________________________________________________ consensus GGGAGTCAAAGTTCCTAGTCATTTATTTATTAGAATTATTCACAGGAGTGACAACGTGCG . : . : . : . : . : . : ONE+ TAAGTTTATGTTGACCAGTCAAATTTTCTCTTCACAAAGGACAGAATGTGAAAAGCACAG TWO+ TAAGTTTATGTTGACCAGTCAAATTTTCTCTTCACAAAGGACAGAATGTGAAAAGCACAG ____________________________________________________________ consensus TAAGTTTATGTTGACCAGTCAAATTTTCTCTTCACAAAGGACAGAATGTGAAAAGCACAG . : . : . : . : . : . : ONE+ ATTCTTTTTTGGTCATGGGGCAGGGAAAGATAATATAACTCTGACTGTGAGAGAATGAGG TWO+ ATTCTTTTTTGGTCATGGGGCAGGGAAAGATAATATAACTCTGACTGTGAGAGAATGAGG ____________________________________________________________ consensus ATTCTTTTTTGGTCATGGGGCAGGGAAAGATAATATAACTCTGACTGTGAGAGAATGAGG . : . : . : . : . : . : ONE+ GAGGAGTAGAGAAGGGATCACATGTTAGTGTTTATTCTTGTTTCGTAGAATGTACTCATA TWO+ GAGGAGTAGAGAAGGGATCACATGTTAGTGTTTATTCTTGTTTCGTAGAATGTACTCATA ____________________________________________________________ consensus GAGGAGTAGAGAAGGGATCACATGTTAGTGTTTATTCTTGTTTCGTAGAATGTACTCATA . : . : . : . : . : . : ONE+ TTGGCCTGGACAGTTGCCCTTTGATTTTAGGAGATTAAAATATACTAAGCATGTAGGCAC TWO+ TTGGCCTGGACAGTTGCCCTTTGATTTTAGGAGATTAAAATATACTAAGCATGTAGGCAC ____________________________________________________________ consensus TTGGCCTGGACAGTTGCCCTTTGATTTTAGGAGATTAAAATATACTAAGCATGTAGGCAC . : . : . : . : . : . : ONE+ CCACCCATACACACATACACAACACAACACACACACACACACACACACGGACACGCAAAC TWO+ CCACCCATACACACATACACAACACAACACACACACACACACACACACGGACACGCAAAC ____________________________________________________________ consensus CCACCCATACACACATACACAACACAACACACACACACACACACACACGGACACGCAAAC . : . : . : . : . : . : ONE+ ACAGTTGCTAATCAGTCTGACTTTTATCTGTAATTCTGGTTCTGCTACTTACTAAATGTG TWO+ ACAGTTGCTAATCAGTCTGACTTTTATCTGTAATTCTGGTTCTGCTACTTACTAAATGTG ____________________________________________________________ consensus ACAGTTGCTAATCAGTCTGACTTTTATCTGTAATTCTGGTTCTGCTACTTACTAAATGTG . : . : . : . : . : . : ONE+ TGACTTAAGGTATATTACTGCACATTGTGCTCACTTTTGTCTATTTGGAT TWO+ TGACTTAAGGTATATTACTGCACATTGTGCTCACTTTTGTCTATTTGGATATTTTAGTTG ____________________________________________________________ consensus TGACTTAAGGTATATTACTGCACATTGTGCTCACTTTTGTCTATTTGGATATTTTAGTTG . : . : . : . : . : . : TWO+ ACATTTCACCTTACATAAAAAATGTGTTGAAAATTGTTAGCAAGAAACACCATAGGGCAT ____________________________________________________________ consensus ACATTTCACCTTACATAAAAAATGTGTTGAAAATTGTTAGCAAGAAACACCATAGGGCAT . : . : . : . : . : . : TWO+ CATCATCTGCTTTGTGATACATAAAACATTTGTTAAAACTGTTCTTTTCTTCTGTAAGGA ____________________________________________________________ consensus CATCATCTGCTTTGTGATACATAAAACATTTGTTAAAACTGTTCTTTTCTTCTGTAAGGA . : . : . : . : . : . : TWO+ CACTCAACAGATTTATCAAATAACCATTTTAAGTGTACAATACAGTATTATTAGAGACAA ____________________________________________________________ consensus CACTCAACAGATTTATCAAATAACCATTTTAAGTGTACAATACAGTATTATTAGAGACAA . : . : . : . : . : . : TWO+ CGTTGTGTAGCAGATCTTTAGAATTTATTCATCTTGCATGATGAAAATTTTATGCCCATT ____________________________________________________________ consensus CGTTGTGTAGCAGATCTTTAGAATTTATTCATCTTGCATGATGAAAATTTTATGCCCATT . : . : . : . : . : . : TWO+ AATTAGCATTTCCCCATTTTCTCCTCCTTTCAGCCTCTAAAAGCCACCACTCTAATCTCT ____________________________________________________________ consensus AATTAGCATTTCCCCATTTTCTCCTCCTTTCAGCCTCTAAAAGCCACCACTCTAATCTCT . : . : . : . : . : . : TWO+ GATTCTCTGAGTTTGGCAATTTTAGATACCTGGTGTGAGTAGAATCATGAAGTATTTGTA THREE+ AGAATCATGAAGTATTTGTA ____________________________________________________________ consensus GATTCTCTGAGTTTGGCAATTTTAGATACCTGGTGTGAGTAGAATCATGAAGTATTTGTA . : . : . : . : . : . : TWO+ TTTCTGTGTCTAGCTTTTTTCATTTACAATATACCTTCAAGGTTCATCCAACTTGTCACA THREE+ TTTCTGTGTCTAGCTTTTTTCATTTACAATATACCTTCAAGGTTCATCCAACTTGTCACA ____________________________________________________________ consensus TTTCTGTGTCTAGCTTTTTTCATTTACAATATACCTTCAAGGTTCATCCAACTTGTCACA . : . : . : . : . : . : TWO+ TATTGCAAGTTTTCCTTCTTTTTAAAGACTGAATAAAATTCCATTGTATGTATTTACCAC THREE+ TATTGCAAGTTTTCCTTCTTTTTAAAGACTGAATAAAATTCCATTGTATGTATTTACCAC ____________________________________________________________ consensus TATTGCAAGTTTTCCTTCTTTTTAAAGACTGAATAAAATTCCATTGTATGTATTTACCAC . : . : . : . : . : . : TWO+ ATCTTCTTTATCCATTCAGCTATCGGGCATTTACGTTGTTCCCACATCGTGACTATTTTT THREE+ ATCTTCTTTATCCATTCAGCTATCGGGCATTTACGTTGTTCCCACATCGTGACTATTTTT ____________________________________________________________ consensus ATCTTCTTTATCCATTCAGCTATCGGGCATTTACGTTGTTCCCACATCGTGACTATTTTT . : . : . : . : . : . : TWO+ AATCGTGCTA THREE+ AATCGTGCTATAATGAGCACTGGAGTGCTAATAGCTCTTTGAGATCCTGATATTTTGCTC ____________________________________________________________ consensus AATCGTGCTATAATGAGCACTGGAGTGCTAATAGCTCTTTGAGATCCTGATATTTTGCTC . : . : . : . : . : . : THREE+ TTTTTTTGATAAAATGGCTTCATAATAGTTATTTCCTCATATCATTATTCTAAAAATTGA ____________________________________________________________ consensus TTTTTTTGATAAAATGGCTTCATAATAGTTATTTCCTCATATCATTATTCTAAAAATTGA . : . : . : . : . : . : THREE+ GCTGCTAAGTATAAATCTGATCACAAAGTAAACATGTAAATATTATTTTTTAATCACACA ____________________________________________________________ consensus GCTGCTAAGTATAAATCTGATCACAAAGTAAACATGTAAATATTATTTTTTAATCACACA . : . : . : . : . : . : THREE+ TGAAGGATTTTTATAGTAACTTTGTGTAAAGGTGGGTATTTTCTTGTAAGTTATTGGAAT ____________________________________________________________ consensus TGAAGGATTTTTATAGTAACTTTGTGTAAAGGTGGGTATTTTCTTGTAAGTTATTGGAAT . : . : . : . : . : . : THREE+ CTATTAATTTTAAGGGAGCATTCCAAATTTTAAGAGGTAGAAAGAAACAAAATTCCAGTG ____________________________________________________________ consensus CTATTAATTTTAAGGGAGCATTCCAAATTTTAAGAGGTAGAAAGAAACAAAATTCCAGTG . : . : . : . : . : . : THREE+ CCTATGTAGTTTATTTCATTTTAATTTAAATTATGAGATGATTGAATAGTGTTCACATTA ____________________________________________________________ consensus CCTATGTAGTTTATTTCATTTTAATTTAAATTATGAGATGATTGAATAGTGTTCACATTA . : . : . : . : . : . : THREE+ GAAGTATAGGAAGATAGTTTAGAGGTCAACTTCTTTGGTCTTGTATTTCTTTTTGTTAAT ____________________________________________________________ consensus GAAGTATAGGAAGATAGTTTAGAGGTCAACTTCTTTGGTCTTGTATTTCTTTTTGTTAAT . : . : . : . : . : . : THREE+ GAAATTAATGT ____________________________________________________________ consensus GAAATTAATGT CONSENSUS SEQUENCES >Contig1 GGATCTCCCCTAGCATACCTAGCAATATTAATCACTCAGATAATTAGGCACTGTCCTATA TTTTTGTAAGATTTATAACTTTAAATTTTTCATTACATATTTTTTTCCAGTGACTTTGAG ACTTATCTTACTTTTTAGTGTGTTAGGTTTATCAGTGGTGATTTTATTGTTATACATGAC CTCATAATAGTTGTTTTTTCTTTCAGTACATTTGTTTTATGTTTAAATTTTTATATTTAC ATGATTAACTTATGCAAATTATATGTTTAAAAATCTGTTTTATTGCCAAAGTTGTAAGGA GGGAGTCAAAGTTCCTAGTCATTTATTTATTAGAATTATTCACAGGAGTGACAACGTGCG TAAGTTTATGTTGACCAGTCAAATTTTCTCTTCACAAAGGACAGAATGTGAAAAGCACAG ATTCTTTTTTGGTCATGGGGCAGGGAAAGATAATATAACTCTGACTGTGAGAGAATGAGG GAGGAGTAGAGAAGGGATCACATGTTAGTGTTTATTCTTGTTTCGTAGAATGTACTCATA TTGGCCTGGACAGTTGCCCTTTGATTTTAGGAGATTAAAATATACTAAGCATGTAGGCAC CCACCCATACACACATACACAACACAACACACACACACACACACACACGGACACGCAAAC ACAGTTGCTAATCAGTCTGACTTTTATCTGTAATTCTGGTTCTGCTACTTACTAAATGTG TGACTTAAGGTATATTACTGCACATTGTGCTCACTTTTGTCTATTTGGATATTTTAGTTG ACATTTCACCTTACATAAAAAATGTGTTGAAAATTGTTAGCAAGAAACACCATAGGGCAT CATCATCTGCTTTGTGATACATAAAACATTTGTTAAAACTGTTCTTTTCTTCTGTAAGGA CACTCAACAGATTTATCAAATAACCATTTTAAGTGTACAATACAGTATTATTAGAGACAA CGTTGTGTAGCAGATCTTTAGAATTTATTCATCTTGCATGATGAAAATTTTATGCCCATT AATTAGCATTTCCCCATTTTCTCCTCCTTTCAGCCTCTAAAAGCCACCACTCTAATCTCT GATTCTCTGAGTTTGGCAATTTTAGATACCTGGTGTGAGTAGAATCATGAAGTATTTGTA TTTCTGTGTCTAGCTTTTTTCATTTACAATATACCTTCAAGGTTCATCCAACTTGTCACA TATTGCAAGTTTTCCTTCTTTTTAAAGACTGAATAAAATTCCATTGTATGTATTTACCAC ATCTTCTTTATCCATTCAGCTATCGGGCATTTACGTTGTTCCCACATCGTGACTATTTTT AATCGTGCTATAATGAGCACTGGAGTGCTAATAGCTCTTTGAGATCCTGATATTTTGCTC TTTTTTTGATAAAATGGCTTCATAATAGTTATTTCCTCATATCATTATTCTAAAAATTGA GCTGCTAAGTATAAATCTGATCACAAAGTAAACATGTAAATATTATTTTTTAATCACACA TGAAGGATTTTTATAGTAACTTTGTGTAAAGGTGGGTATTTTCTTGTAAGTTATTGGAAT CTATTAATTTTAAGGGAGCATTCCAAATTTTAAGAGGTAGAAAGAAACAAAATTCCAGTG CCTATGTAGTTTATTTCATTTTAATTTAAATTATGAGATGATTGAATAGTGTTCACATTA GAAGTATAGGAAGATAGTTTAGAGGTCAACTTCTTTGGTCTTGTATTTCTTTTTGTTAAT GAAATTAATGT