ClustalW Multiple Sequence Alignment (@BCM)

ClustalW Multiple Sequence Alignment (@BCM)

Cut and paste sequences here (ReadSeq formats accepted;
All sequences must be in the same format type; max 20,000 chars, total):

DNA Sequence Parameters:

Fast Pairwise Alignment Parameters:

K-tuple (word) size:
Window size:
Scoring method:
Number of top diagonals:
Gap penalty:

Multiple Alignment Parameters:

Gap opening penalty:
Gap extension penalty:
Weight transitions:

Protein Sequence Parameters:

Fast Pairwise Alignment Parameters:

K-tuple (word) size:
Window size:
Scoring method:
Number of top diagonals:
Gap penalty:

Multiple Alignment Parameters:

Weight matrix:
Gap opening penalty:
Gap extension penalty:
Hydrophilic gaps:
Hydrophilic residues:
Residue-specific gap penalties:

Other Parameters:

Quicktree (always On):
Divergence cutoff (% identity for delay):
Gap separation distance:
End gap separation penalty:
Output order:

Credits:
ClustalW: TJ Gibson (Gibson@EMBL-Heidelberg.DE), DG Higgins (Higgins@EBI.ac.uk), & JD Thompson, EMBL, Heidelberg, Germany.
ClustalW Server @BCM: Kim C. Worley, Michael P. McLeod and Zhenwu Yang, Human Genome Center, Baylor College of Medicine (Email)

Last change: Tue Apr 9 14:06:51 CDT 1996