PIMA Multiple Sequence Alignment Parameters

Cluster name : pat

Cluster method : both

Matrix : class1

Gap open penalty (length independent) : "blank"

Gap extension penalty (length dependent) : "blank"

Do not include intermediate patterns

Please note:
If no value is given for the gap penalties then the matrix defaults are used. The defaults for each matrix are listed on the options form. For the default class1 matrix the default gap opening penalty is 6.67 and the default gap extension penalty is 1.33 .

Last change: Wed Nov 1 17:28:19 CST 1995