OU Actinobacillus actinomycetemcomitans Sequence Blast Server Results

BLASTN 1.4.9MP [26-March-1996] [Build 11:25:50 Sep 16 1996]
Reference:  Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W. Myers,
and David J. Lipman (1990).  Basic local alignment search tool.  J. Mol. Biol.
215:403-10.
Notice:  this program and its default parameter settings are optimized to find
nearly identical sequences rapidly.  To identify weak similarities encoded in
nucleic acid, use BLASTX, TBLASTN or TBLASTX.
Query=  ECOPGSA
        (956 letters)
Database:  /act/abi/actphrap/auto_act
           396 sequences; 1,971,947 total letters.
Searching..................................................done
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N
Contig607                                                      367  3.0e-22   1
Contig604                                                      204  1.2e-08   1
Contig287                                                      149  0.00046   1
Contig622                                                       99  0.9992    1
Contig600                                                       99  0.9992    1
>Contig607
          Length = 15,847
  Minus Strand HSPs:
 Score = 367 (101.4 bits), Expect = 3.0e-22, P = 3.0e-22
 Identities = 91/113 (80%), Positives = 91/113 (80%), Strand = Minus / Plus
Query:   887 ACATCCGCTTGACGCCGATGTCTTTTAAACTGGAGCGGGAAACGAGACTCGAACTCGCGA 828
             | | ||||||  |    | | | ||     |||||||||||||||| |||||||||||||
Sbjct:  8798 ATAACCGCTTTGCTAACACGCCGTTAGTTTTGGAGCGGGAAACGAGGCTCGAACTCGCGA 8857
Query:   827 CCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATTCATC 775
             |||| ||||||||||||| ||||||||||||||||||||||||||| ||  ||
Sbjct:  8858 CCCCAACCTTGGCAAGGTTGTGCTCTACCAACTGAGCTATTCCCGCGTTTGTC 8910
 Score = 162 (44.8 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 38/45 (84%), Positives = 38/45 (84%), Strand = Minus / Plus
Query:   956 TAGACGGATTTGCAATCCGCTACATAACCGCTTTGTTAACGCGCC 912
             || | |||||||||||||  | ||||||||||||| |||| ||||
Sbjct:  8775 TACATGGATTTGCAATCCAGTGCATAACCGCTTTGCTAACACGCC 8819
>Contig604
          Length = 9296
  Plus Strand HSPs:
 Score = 204 (56.4 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 60/84 (71%), Positives = 60/84 (71%), Strand = Plus / Plus
Query:   781 TGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAG 840
             || | || |||||||||||| |||||||  || |  |||||  | |||| |  |||||||
Sbjct:  1734 TGGGCGATTAGCTCAGTTGGGAGAGCACCTCCCTTACAAGGAGGAGGTCACTGGTTCGAG 1793
Query:   841 TCTCGTTTCCCGCTCCAGTTTAAA 864
              |  || || | | ||| || |||
Sbjct:  1794 ACCGGTATCGCCCACCACTTAAAA 1817
 Score = 193 (53.3 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 57/80 (71%), Positives = 57/80 (71%), Strand = Plus / Plus
Query:   781 TGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAG 840
             || | || |||||||||||| |||||||  || |  |||||  |||| | |  |||||||
Sbjct:  1620 TGGGCGATTAGCTCAGTTGGGAGAGCACCTCCCTTACAAGGAGGGGGGCACTGGTTCGAG 1679
Query:   841 TCTCGTTTCCCGCTCCAGTT 860
              |  || || | | ||| ||
Sbjct:  1680 ACCGGTATCGCCCACCACTT 1699
 Score = 192 (53.1 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 56/78 (71%), Positives = 56/78 (71%), Strand = Plus / Plus
Query:   782 GCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGT 841
             | | || |||||||||||| |||||||  || |  |||||  |||||| |  ||||||| 
Sbjct:  1838 GGGCGATTAGCTCAGTTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCACTGGTTCGAGA 1897
Query:   842 CTCGTTTCCCGCTCCAGT 859
             |  || || | | ||| |
Sbjct:  1898 CCGGTATCGCCCACCACT 1915
>Contig287
          Length = 1892
  Minus Strand HSPs:
 Score = 149 (41.2 bits), Expect = 0.00046, P = 0.00046
 Identities = 53/82 (64%), Positives = 53/82 (64%), Strand = Minus / Plus
Query:   860 AACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTA 801
             || |||   |||    ||| ||||||||| | || ||    || | |     ||||||||
Sbjct:   781 AAATGGCAGGGGCGGAGAGTCTCGAACTCCCAACACCCGGTTTTGGAGACCGGTGCTCTA 840
Query:   800 CCAACTGAGCTATTCCCGCATT 779
             |||| ||| |||  |||  |||
Sbjct:   841 CCAATTGAACTACGCCCCTATT 862
>Contig622
          Length = 16,565
  Minus Strand HSPs:
 Score = 99 (27.4 bits), Expect = 7.1, P = 1.0
 Identities = 27/36 (75%), Positives = 27/36 (75%), Strand = Minus / Plus
Query:   214 TCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAA 179
             |||||| |   |||| || |||   |||||||||||
Sbjct:  6111 TCACCGGCAGTACGCCGAGAATATCCGCGGCGGCAA 6146
>Contig600
          Length = 10,354
  Plus Strand HSPs:
 Score = 99 (27.4 bits), Expect = 7.1, P = 1.0
 Identities = 27/36 (75%), Positives = 27/36 (75%), Strand = Plus / Plus
Query:   525 GGTTGAGTACGCCGGTATTGCACTTTTCTTTGTGGC 560
             ||| || | ||||||||||| || || |  || |||
Sbjct:  5549 GGTGGAATTCGCCGGTATTGTACGTTCCGATGCGGC 5584
Parameters:
  V=500
  B=250
  -ctxfactor=2.00
  E=10
  Query                        -----  As Used  -----    -----  Computed  ----
  Strand MatID Matrix name     Lambda    K       H      Lambda    K       H
   +1      0   +5,-4           0.192   0.173   0.357    same    same    same
   -1      0   +5,-4           0.192   0.173   0.357    same    same    same
  Query
  Strand MatID  Length  Eff.Length   E    S  W   T  X     E2  S2
   +1      0      956       956      10. 94 11 N/A 73   0.023 82
   -1      0      956       956      10. 94 11 N/A 73   0.023 82
Statistics:
  Query          Expected          Observed           HSPs       HSPs
  Strand MatID  High Score        High Score       Reportable  Reported
   +1      0    102 (28.2 bits)  204 (56.4 bits)        4          4
   -1      0    102 (28.2 bits)  367 (101.4 bits)       4          4
  Query         Neighborhd  Word      Excluded    Failed   Successful  Overlaps
  Strand MatID   Words      Hits        Hits    Extensions Extensions  Excluded
   +1      0       949         646          46         583       17         0
   -1      0       949         739          74         648       17         0
  Database:  /act/abi/actphrap/auto_act
    Release date:  unknown
    Posted date:  2:41 AM CDT Oct 9, 1999
  # of letters in database:  1,971,947
  # of sequences in database:  396
  # of database sequences satisfying E:  5
  No. of states in DFA:  251 (251 KB)
  Total size of DFA:  274 KB (320 KB)
  Time to generate neighborhood:  0.01u 0.00s 0.01t  Real: 00:00:00
  No. of processors used:  1
  Time to search database:  0.13u 0.03s 0.16t  Real: 00:00:01
  Total cpu time:  0.18u 0.04s 0.22t  Real: 00:00:01