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sp|P06978|PGSA_ECOLI|gi|548498 CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE
3-PHOSPHATIDYLTRANSFERASE (PHOSPHATIDYLGLYCEROPHOSPHATE SYNTHASE)
(PGP SYNTHASE).
Length = 182
Cluster: 7579 cdp-diacylglycerol--glycerol-3-phosphate mycobacterium 3-phosphatidyltransferase leprae phosphatidylglycerophosphate synthase pgp
Conserved regions:
Cluster 7579 |_____ _________ ___ |
Local hits (HSPs): __________________________________________________
Annotated Domains: _ ______________________________________________
__________________________________________________
Database sequence: | | | | | 182
0 50 100 150
__________________
Annotated Domains:
Entrez pyrrolidone-carboxylic-acid site 2
Entrez Transmembrane region 14..38
Entrez Transmembrane region 62..82
Entrez Transmembrane region 88..108
Entrez Transmembrane region 147..169
PFAM CDP-OH_P_transf: CDP-alcohol phosphatidy 35..177
BLOCKS BL00379: CDP-alcohol phosphatidyltransfe 45..81
PROSITE CDP_ALCOHOL_P_TRANSF: CDP-alcohol phosph 49..71
__________________
Plus Strand HSPs:
Score = 945 (434.7 bits), Expect = 3.6e-126, P = 3.6e-126
Identities = 182/182 (100%), Positives = 182/182 (100%), Frame = +1
Query: 82 MQFNIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQST 261
MQFNIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQST
Sbjct: 1 MQFNIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQST 60
Query: 262 RFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAELGKRSS 441
RFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAELGKRSS
Sbjct: 61 RFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAELGKRSS 120
Query: 442 VAVSWIGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVAAVLTLWSMLQYLSAARADLL 621
VAVSWIGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVAAVLTLWSMLQYLSAARADLL
Sbjct: 121 VAVSWIGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVAAVLTLWSMLQYLSAARADLL 180
Query: 622 DQ 627
DQ
Sbjct: 181 DQ 182
gi|472401 phosphatidylglycerophosphate synthase
Length = 195
Cluster: 7579 cdp-diacylglycerol--glycerol-3-phosphate mycobacterium 3-phosphatidyltransferase leprae phosphatidylglycerophosphate synthase pgp
Conserved regions:
Cluster 7579 |____ _________ ___ |
Local hits (HSPs): ______________________________ _____ ______
__________________________________________________
Database sequence: | | | | | 195
0 50 100 150
Plus Strand HSPs:
Score = 400 (184.0 bits), Expect = 6.0e-66, Sum P(3) = 6.0e-66
Identities = 72/114 (63%), Positives = 93/114 (81%), Frame = +1
Query: 91 NIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQSTRFG 270
NIP L+T+ RV+LIP F+L+FYLP WS AA+ +F AA TDW DG+LARR QST FG
Sbjct: 2 NIPNLITVLRVLLIPIFILLFYLPYNWSYMAASSVFAFAAATDWLDGYLARRLEQSTPFG 61
Query: 271 AFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAELGK 432
AFLDPVADK++VA+A+VL+ + + + W+TLPAA +I REI++SALREWMAELG+
Sbjct: 62 AFLDPVADKLMVAVALVLLVQEHGNLWLTLPAAVIIGREIVVSALREWMAELGR 115
Score = 73 (33.6 bits), Expect = 6.0e-66, Sum P(3) = 6.0e-66
Identities = 15/23 (65%), Positives = 16/23 (69%), Frame = +1
Query: 538 GIALFFVAAVLTLWSMLQYLSAA 606
G A +A LTLWSMLQYL AA
Sbjct: 154 GYAFLLIAGGLTLWSMLQYLRAA 176
Score = 42 (19.3 bits), Expect = 6.0e-66, Sum P(3) = 6.0e-66
Identities = 10/16 (62%), Positives = 11/16 (68%), Frame = +1
Query: 469 KTTAQMVALAWLLWRP 516
KT AQM+AL LL P
Sbjct: 129 KTAAQMLALVILLANP 144
gi|467087
Length = 193
Cluster: 7579 cdp-diacylglycerol--glycerol-3-phosphate mycobacterium 3-phosphatidyltransferase leprae phosphatidylglycerophosphate synthase pgp
Conserved regions:
Cluster 7579 |____ _________ ___ |
Local hits (HSPs): ______ _____________ _______
__________________________________________________
Database sequence: | | | | | 193
0 50 100 150
Plus Strand HSPs:
Score = 142 (65.3 bits), Expect = 6.0e-18, Sum P(3) = 6.0e-18
Identities = 26/47 (55%), Positives = 35/47 (74%), Frame = +1
Query: 181 AAALIFCVAAVTDWFDGFLARRWNQSTRFGAFLDPVADKVLVAIAMV 321
AA +IF VA +TD DG LARR+ +T FGAF+DP+ADK L+ A++
Sbjct: 42 AAFVIFTVACITDRLDGLLARRYGMATEFGAFVDPIADKTLIGAALI 88
Score = 54 (24.8 bits), Expect = 6.0e-18, Sum P(3) = 6.0e-18
Identities = 11/25 (44%), Positives = 14/25 (56%), Frame = +1
Query: 433 RSSVAVSWIGKVKTTAQMVALAWLL 507
R + SW GK+KT Q VA+ L
Sbjct: 121 RGVIPASWGGKLKTVVQAVAIGLFL 145
Score = 45 (20.7 bits), Expect = 6.0e-18, Sum P(3) = 6.0e-18
Identities = 7/22 (31%), Positives = 15/22 (68%), Frame = +1
Query: 91 NIPTLLTLFRVILIPFFVLVFY 156
N+ +LT R++L+P F++ +
Sbjct: 9 NLANILTGLRLMLVPVFLVALF 30
sp|P06197|PIS_YEAST|gi|130240 CDP-DIACYLGLYCEROL--INOSITOL
3-PHOSPHATIDYLTRANSFERASE (PHOSPHATIDYLINOSITOL SYNTHASE).
Length = 220
Local hits (HSPs): ______________
Annotated Domains: _ _____________________________________ _
__________________________________________________
Database sequence: | | | | | | 220
0 50 100 150 200
__________________
Annotated Domains:
Entrez glycosylation site 4
Entrez glycosylation site 217
PFAM CDP-OH_P_transf: CDP-alcohol phosphatidy 46..205
BLOCKS BL00379: CDP-alcohol phosphatidyltransfe 56..92
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 120..127
PROSITE CDP_ALCOHOL_P_TRANSF: CDP-alcohol phosph 59..81
__________________
Plus Strand HSPs:
Score = 91 (41.9 bits), Expect = 0.0019, P = 0.0019
Identities = 20/60 (33%), Positives = 30/60 (50%), Frame = +1
Query: 175 PFAAALIFCVAAVTDWFDGFLARRWNQSTRFGAFLDPVADKVLVAIAMVLVTEHYHSWWV 354
P A ++ + + D DG +AR++NQ + GA LD V D+ A M + Y W V
Sbjct: 42 PTAFTWLYSTSCLLDALDGTMARKYNQVSSLGAVLDMVTDRSSTAGLMCFLCVQYPQWCV 101
sp|P37924|FIMD_SALTY|gi|585135 FIMD PROTEIN PRECURSOR.
Length = 870
Cluster: 634.11 cg fimd focd fimbrial protein site s adhesin no precursor
Cluster: 634.21 cs6 fimd capsule f1 site subunits usher protein synthesis precursor
Conserved regions:
Cluster 634.11 |___ __ ________ ______ __ __ _ _________|
Cluster 634.21 |_________ _________|
Local hits (HSPs): __ __ ____
Annotated Domains: _______________________________________________
__________________________________________________
Database sequence: | | | | | | | 870
0 150 300 450 600 750
__________________
Annotated Domains:
PFAM Usher: Fimbrial Usher proteins 38..850
BLOCKS BL01151: Fimbrial biogenesis outer membr 260..314
PROSITE FIMBRIAL_USHER: Fimbrial biogenesis oute 314..324
PROSITE TYR_PHOSPHO_SITE: Tyrosine kinase phosph 191..198
PROSITE TYR_PHOSPHO_SITE: Tyrosine kinase phosph 484..491
__________________
Plus Strand HSPs:
Score = 63 (29.0 bits), Expect = 1.1, Sum P(3) = 0.67
Identities = 14/47 (29%), Positives = 24/47 (51%), Frame = +3
Query: 804 STTLPRSGSRVRVSFPAPV*KTSASSGCLAERPEEFGALTKRLCSGL 944
S+ +P G+ VR +F + + + L RP FGA+ + SG+
Sbjct: 764 SSVVPTEGALVRAAFDTRIGVRAIITARLGGRPLPFGAIVRETASGI 810
Score = 39 (17.9 bits), Expect = 1.1, Sum P(3) = 0.67
Identities = 6/16 (37%), Positives = 11/16 (68%), Frame = +2
Query: 398 LRYANGWRSWVNAVAW 445
L YA+GW+ +++W
Sbjct: 554 LGYASGWQGISYSLSW 569
Score = 36 (16.6 bits), Expect = 1.1, Sum P(3) = 0.67
Identities = 5/9 (55%), Positives = 8/9 (88%), Frame = +1
Query: 226 DGFLARRWN 252
DG+ ++RWN
Sbjct: 225 DGYHSQRWN 233
sp|P37730|AMYD_THETU|gi|584757 POTENTIAL STARCH DEGRADATION PRODUCTS TRANSPORT
SYSTEM PERMEASE PROTEIN AMYD.
Length = 292
Cluster: 5749.3 potential sn-glycerol-3-phosphate starch sugar-binding transport products system protein permease ugpa
Conserved regions:
Cluster 5749.3 | _______ ___ __ |
Local hits (HSPs): ______
Annotated Domains: ____ ____ _____ ______________________
__________________________________________________
Database sequence: | | | | | | | 292
0 50 100 150 200 250
__________________
Annotated Domains:
Entrez Transmembrane region 15..35
Entrez Transmembrane region 77..97
Entrez Transmembrane region 110..130
Entrez Transmembrane region 156..176
Entrez Transmembrane region 205..225
Entrez Transmembrane region 260..280
PFAM BPD_transp: Binding-protein-dependent tr 178..255
BLOCKS BL00402A: Binding-protein-dependent tran 16..29
BLOCKS BL00402B: Binding-protein-dependent tran 188..207
PROSITE BPD_TRANSP_INN_MEMBR: Binding-protein-de 179..207
__________________
Plus Strand HSPs:
Score = 69 (31.7 bits), Expect = 2.8, P = 0.94
Identities = 13/29 (44%), Positives = 19/29 (65%), Frame = +1
Query: 88 FNIPTLLTLFRVILIPFFVLVFYLPVTWS 174
F PTLL+L V+LIPF + ++Y W+
Sbjct: 17 FIAPTLLSLIIVVLIPFIIGIYYSFTDWN 45
gi|525287 aminopeptidase N.
Length = 963
Cluster: 635.17 thyrotropin-releasing aminopeptidase microsomal n type ec 3.4.11.2 membrane protein rabbits
Cluster: 635.21 aminopeptidase yscii lysyl microsomal n a ec lys-ap protein membrane
Conserved regions:
Cluster 635.17 |________________ __ _ ___ _ _ __ |
Cluster 635.21 |________________ |
Local hits (HSPs): __ ___
__________________________________________________
Database sequence: | | | | | | | | 963
0 150 300 450 600 750 900
Minus Strand HSPs:
Score = 59 (27.1 bits), Expect = 5.8, Sum P(2) = 1.0
Identities = 12/47 (25%), Positives = 26/47 (55%), Frame = -2
Query: 700 YLAR*VNDIFHHF*SFAENYAETITDQANLHAQRSNIATLTTESVPQ 560
YL + V +F HF + +N+ E + + +++ + I+T + +PQ
Sbjct: 718 YLRKQVEPLFQHFETLTKNWTERPENLMDQYSEINAISTACSNGLPQ 764
Score = 44 (20.2 bits), Expect = 5.8, Sum P(2) = 1.0
Identities = 8/16 (50%), Positives = 9/16 (56%), Frame = -1
Query: 824 RPWQGRALPTELFPHS 777
+PW LPT L P S
Sbjct: 65 KPWNRYRLPTTLLPDS 80
gi|532271 phosphatidylserine synthase
Length = 177
Local hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | 177
0 50 100 150
Plus Strand HSPs:
Score = 66 (30.4 bits), Expect = 6.3, P = 1.0
Identities = 16/45 (35%), Positives = 21/45 (46%), Frame = +1
Query: 181 AAALIFCVAAVTDWFDGFLARRWNQSTRFGAFLDPVADKVLVAIA 315
+A L D+FDG AR+ N + G LD AD V +A
Sbjct: 30 SAVLFIFTGMFLDFFDGMAARKLNAVSDMGRELDSFADLVTFGVA 74
sp|P30343|MER3_STRLI|gi|266525 MERCURY RESISTANCE OPERON ORF3.
Length = 189
Local hits (HSPs): ____________
Annotated Domains: ___ ____
__________________________________________________
Database sequence: | | | | | 189
0 50 100 150
__________________
Annotated Domains:
PROSITE PROKAR_LIPOPROTEIN: Prokaryotic membrane 24..34
PROSITE PROKAR_LIPOPROTEIN: Prokaryotic membrane 75..85
__________________
Minus Strand HSPs:
Score = 66 (30.4 bits), Expect = 6.5, P = 1.0
Identities = 16/43 (37%), Positives = 21/43 (48%), Frame = -2
Query: 625 DQANLHAQRSNIATLTTESVPQPQRKVQYRRTQPKCSDATAAM 497
D+ +QR +A L+T V PQ KV YR T P A+
Sbjct: 142 DKGAALSQRYQVAALSTLIVVAPQGKVTYRATDPSADQIQDAL 184
gi|461402 methyltransferase
Length = 492
Cluster: 2586.5 chemotaxis cher hypothetical methyltransferase protein 19
Cluster: 2586.7 cher hypothetical similar protein to product methyltransferase gene: number x73681
Conserved regions:
Cluster 2586.5 | __ _____ ______|
Cluster 2586.7 | _______ ____|
Local hits (HSPs): ___ ____
__________________________________________________
Database sequence: | | | | | 492
0 150 300 450
Minus Strand HSPs:
Score = 56 (25.8 bits), Expect = 9.5, Sum P(2) = 1.0
Identities = 10/25 (40%), Positives = 16/25 (64%), Frame = -3
Query: 951 GFAIRYITALLTRQILQAFQPDIRL 877
G +RY+ +TR +L QP++RL
Sbjct: 329 GRFLRYVAGEITRNLLTLIQPELRL 353
Score = 43 (19.8 bits), Expect = 9.5, Sum P(2) = 1.0
Identities = 10/29 (34%), Positives = 12/29 (41%), Frame = -2
Query: 520 CSDATAAMPTPPSGQWFSLSQSRRRPRYC 434
CS TP S + SRRR + C
Sbjct: 436 CSGPNCTCRTPSSNRKSPARSSRRRTKKC 464
bbs|140965|gi|455942 wingless protein=wg/wingless wgIL114 [Drosophila, Peptide
Mutant, 468 aa]
Length = 468
Local hits (HSPs): ___ ___ __
__________________________________________________
Database sequence: | | | | | 468
0 150 300 450
Plus Strand HSPs:
Score = 45 (20.7 bits), Expect = 10., Sum P(3) = 1.0
Identities = 9/19 (47%), Positives = 12/19 (63%), Frame = +1
Query: 208 AVTDWFDGFLARRWNQSTR 264
A+++ F RRWN STR
Sbjct: 89 AISECQHQFRNRRWNSSTR 107
Score = 43 (19.8 bits), Expect = 10., Sum P(3) = 1.0
Identities = 7/11 (63%), Positives = 8/11 (72%), Frame = +3
Query: 585 VAIFERCACRF 617
V + ERCAC F
Sbjct: 437 VVVVERCACTF 447
Score = 38 (17.5 bits), Expect = 10., Sum P(3) = 1.0
Identities = 7/15 (46%), Positives = 7/15 (46%), Frame = +2
Query: 482 RWWRWHGCCGVRTFG 526
R W W GC FG
Sbjct: 178 RDWEWGGCSDNIGFG 192
pir||S32661|gi|420769 OAC2 protein - Azorhizobium caulinodans
Length = 296
Cluster: 2200.8 dtdp-4-dehydrorhamnose putative thymidine protein dtdp-4-keto-l-rhamnose reductase dtdp-6-deoxy-l-mannose dehydrogenase dtdp-l-rhamnose synthetase
Conserved regions:
Cluster 2200.8 |___ _______________ _____ |
Local hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | | 296
0 50 100 150 200 250
Minus Strand HSPs:
Score = 65 (29.9 bits), Expect = 10., P = 1.0
Identities = 12/32 (37%), Positives = 19/32 (59%), Frame = -2
Query: 643 YAETITDQANLHAQRSNIATLTTESVPQPQRK 548
+A+ I D+A + RS +A +TT P P R+
Sbjct: 223 FAQAIIDRAATYTGRSEVAAITTAEYPTPARR 254
bbs|114265|gi|256412 lincomycin-resistance determinant LmrB=23S rRNA
adenine(2058)-N-methyltransferase homolog [Streptomyces
lincolnensis, 78-11, Peptide, 278 aa]
Length = 278
Cluster: 2933.6 midecamycin-resistance myrb resistance erythromycin rrna n-6-methyltransferase protein x62867 streptomyces peptide
Conserved regions:
Cluster 2933.6 |_ _____ ____ _____ ____ |
Local hits (HSPs): ________ _____
__________________________________________________
Database sequence: | | | | | | | 278
0 50 100 150 200 250
Minus Strand HSPs:
Score = 56 (25.8 bits), Expect = 11., Sum P(2) = 1.0
Identities = 12/43 (27%), Positives = 19/43 (44%), Frame = -2
Query: 547 VQYRRTQPKCSDATAAMPTPPSGQWFSLSQSRRRPRYCVYPTP 419
VQ+ + + ++ T S WF S +R PR+ P P
Sbjct: 125 VQWEVARRRAGIGGCSLVTAESWPWFDFSVLKRVPRFAFRPAP 167
Score = 40 (18.4 bits), Expect = 11., Sum P(2) = 1.0
Identities = 9/26 (34%), Positives = 11/26 (42%), Frame = -2
Query: 253 GSSGVPENHRTSQSPPRRRK*ARRQT 176
G VP R PPR + RR +
Sbjct: 252 GGRSVPRTRRPRGLPPRTSRGPRRNS 277
gi|581701 methyltransferase
Length = 278
Cluster: 2933.6 midecamycin-resistance myrb resistance erythromycin rrna n-6-methyltransferase protein x62867 streptomyces peptide
Conserved regions:
Cluster 2933.6 |_ _____ ____ _____ ____ |
Local hits (HSPs): ________ _____
__________________________________________________
Database sequence: | | | | | | | 278
0 50 100 150 200 250
Minus Strand HSPs:
Score = 56 (25.8 bits), Expect = 11., Sum P(2) = 1.0
Identities = 12/43 (27%), Positives = 19/43 (44%), Frame = -2
Query: 547 VQYRRTQPKCSDATAAMPTPPSGQWFSLSQSRRRPRYCVYPTP 419
VQ+ + + ++ T S WF S +R PR+ P P
Sbjct: 125 VQWEVARRRAGIGGCSLVTAESWPWFDFSVLKRVPRFAFRPAP 167
Score = 40 (18.4 bits), Expect = 11., Sum P(2) = 1.0
Identities = 9/26 (34%), Positives = 11/26 (42%), Frame = -2
Query: 253 GSSGVPENHRTSQSPPRRRK*ARRQT 176
G VP R PPR + RR +
Sbjct: 252 GGRSVPRTRRPRGLPPRTSRGPRRNS 277
sp|P18175|INVO_PIG|gi|124735 INVOLUCRIN.
Length = 347
Cluster: 5789.3 involucrin
Conserved regions:
Cluster 5789.3 |_____________________ |
Local hits (HSPs): ______ __________
Annotated Domains: ____________ _______
__________________________________________________
Database sequence: | | | | 347
0 150 300
__________________
Annotated Domains:
BLOCKS BL00795A: Involucrin proteins. 1..35
BLOCKS BL00795B: Involucrin proteins. 41..80
BLOCKS BL00795C: Involucrin proteins. 240..284
PROSITE INVOLUCRIN: Involucrin signature. 1..11
__________________
Minus Strand HSPs:
Score = 57 (26.2 bits), Expect = 11., Sum P(2) = 1.0
Identities = 13/37 (35%), Positives = 21/37 (56%), Frame = -3
Query: 279 KESTKPGTLVPAACQKTIEPVSHRRDAENERGGKRRP 169
++ T P TL PA Q+ ++PVS D + E+ + P
Sbjct: 3 QQYTLPVTLPPALSQEPLKPVSPPADTQQEQVKQATP 39
Score = 40 (18.4 bits), Expect = 11., Sum P(2) = 1.0
Identities = 11/47 (23%), Positives = 24/47 (51%), Frame = -3
Query: 162 RQIKDQYKEWDKDDTEQCKQRRDIKLHNDG*LSVVSKITPMLLQRHQ 22
+Q + Q +E D +Q ++ ++ +LH D S++ + + HQ
Sbjct: 110 QQQESQEQELHVDQQQQQQESQEQELHVDQQQQQESQVQELHVGHHQ 156
Score = 36 (16.6 bits), Expect = 38., Sum P(2) = 1.0
Identities = 8/29 (27%), Positives = 17/29 (58%), Frame = -3
Query: 162 RQIKDQYKEWDKDDTEQCKQRRDIKLHND 76
+Q + Q +E D +Q ++ ++ +LH D
Sbjct: 94 QQQESQVQELHVDQQQQQQESQEQELHVD 122
gi|581699 bases 361..1197 in X62867
Length = 279
Cluster: 2933.6 midecamycin-resistance myrb resistance erythromycin rrna n-6-methyltransferase protein x62867 streptomyces peptide
Conserved regions:
Cluster 2933.6 |_ _____ ___ _____ ____ |
Local hits (HSPs): ________ _____
__________________________________________________
Database sequence: | | | | | | | 279
0 50 100 150 200 250
Minus Strand HSPs:
Score = 56 (25.8 bits), Expect = 11., Sum P(2) = 1.0
Identities = 12/43 (27%), Positives = 19/43 (44%), Frame = -2
Query: 547 VQYRRTQPKCSDATAAMPTPPSGQWFSLSQSRRRPRYCVYPTP 419
VQ+ + + ++ T S WF S +R PR+ P P
Sbjct: 126 VQWEVARRRAGIGGCSLVTAESWPWFDFSVLKRVPRFAFRPAP 168
Score = 40 (18.4 bits), Expect = 11., Sum P(2) = 1.0
Identities = 9/26 (34%), Positives = 11/26 (42%), Frame = -2
Query: 253 GSSGVPENHRTSQSPPRRRK*ARRQT 176
G VP R PPR + RR +
Sbjct: 253 GGRSVPRTRRPRGLPPRTSRGPRRNS 278
pir||S33978|gi|479473 hypothetical protein - African clawed frog transposon
1a11
Length = 653
Local hits (HSPs): ______ ___
Annotated Domains: __
__________________________________________________
Database sequence: | | | | | | 653
0 150 300 450 600
__________________
Annotated Domains:
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 284..291
__________________
Minus Strand HSPs:
Score = 44 (20.2 bits), Expect = 11., Sum P(3) = 1.0
Identities = 7/13 (53%), Positives = 9/13 (69%), Frame = -3
Query: 318 HGDSHENFICHRV 280
HGD+ F CH+V
Sbjct: 206 HGDTRRCFSCHQV 218
Score = 43 (19.8 bits), Expect = 11., Sum P(3) = 1.0
Identities = 10/27 (37%), Positives = 15/27 (55%), Frame = -3
Query: 192 ERGGKRRPGDRQIKDQYKEWDKDDTEQ 112
ERG + RP D K Q E +++ E+
Sbjct: 572 ERGTRDRPEDPTGKGQIAETEENQEEE 598
Score = 41 (18.9 bits), Expect = 11., Sum P(3) = 1.0
Identities = 13/48 (27%), Positives = 19/48 (39%), Frame = -2
Query: 598 SNIATLTTESVPQPQRKVQYRRTQPKCSDATAAMPTPPSGQWFSLSQS 455
+ IA S RK + +P+ +D MP S Q S+S
Sbjct: 147 AEIADTYAASRVPDSRKSSFHSWKPRKADVNLTMPPSLSAQHARSSES 194
sp|P15586|GL6S_HUMAN|gi|232126 N-ACETYLGLUCOSAMINE-6-SULFATASE PRECURSOR (G6S)
(GLUCOSAMINE-6-SULFATASE).
Length = 552
Cluster: 4462.4 mature n-acetylglucosamine-6-sulfatase arylsulfatase precursor kd protein in ilvo-ibpb intergenic region
Conserved regions:
Cluster 4462.4 |____ _____________|
Local hits (HSPs): __ ___ __
Annotated Domains: _ _________________________________________
__________________________________________________
Database sequence: | | | | | 552
0 150 300 450
__________________
Annotated Domains:
Entrez modified site: 2-AMINO-3-OXOPROPIONIC AC 91
Entrez glycosylation site 111
Entrez glycosylation site 117
Entrez glycosylation site 183
Entrez glycosylation site 198
Entrez glycosylation site 210
Entrez glycosylation site 279
Entrez glycosylation site 317
Entrez glycosylation site 362
Entrez glycosylation site 387
Entrez glycosylation site 405
Entrez glycosylation site 422
Entrez glycosylation site 449
Entrez glycosylation site 480
PFAM Sulfatase: Sulfatase 47..485
BLOCKS BL00523A: Sulfatases proteins. 47..63
BLOCKS BL00523B: Sulfatases proteins. 91..102
BLOCKS BL00523C: Sulfatases proteins. 141..151
BLOCKS BL00523D: Sulfatases proteins. 224..235
BLOCKS BL00523E: Sulfatases proteins. 299..328
BLOCKS BL00523F: Sulfatases proteins. 373..383
BLOCKS BL00523G: Sulfatases proteins. 478..487
PROSITE PROKAR_LIPOPROTEIN: Prokaryotic membrane 24..34
PROSITE SULFATASE_1: Sulfatases signature 1. 89..101
PROSITE SULFATASE_2: Sulfatases signature 2. 141..151
__________________
Plus Strand HSPs:
Score = 49 (22.5 bits), Expect = 14., Sum P(3) = 1.0
Identities = 12/18 (66%), Positives = 13/18 (72%), Frame = +2
Query: 230 VFWHAAGTRVPGLVLSLT 283
VF AAGTR P +VL LT
Sbjct: 37 VFGVAAGTRRPNVVLLLT 54
Score = 41 (18.9 bits), Expect = 14., Sum P(3) = 1.0
Identities = 7/13 (53%), Positives = 9/13 (69%), Frame = +1
Query: 502 LLWRPNIWVEYAG 540
L WR ++ VEY G
Sbjct: 406 LTWRSDVLVEYQG 418
Score = 36 (16.6 bits), Expect = 14., Sum P(3) = 1.0
Identities = 8/24 (33%), Positives = 13/24 (54%), Frame = +2
Query: 383 VKLLFLRYANGWRSWVNAVAWPSP 454
V L FL Y + + + +A P+P
Sbjct: 211 VSLDFLDYKSNFEPFFMMIATPAP 234
gi|457707 CshA protein
Length = 2508
Local hits (HSPs): _
__________________________________________________
Database sequence: | | | | | || 2508
0 500 1000 1500 2000 2500
Minus Strand HSPs:
Score = 64 (29.4 bits), Expect = 17., P = 1.0
Identities = 12/34 (35%), Positives = 19/34 (55%), Frame = -2
Query: 304 RELYLPQGQGKHQTGYSGSSGVPENHRTSQSPPR 203
R +Y PQG+ + TG+ G + H T++ P R
Sbjct: 668 RRVYPPQGEKQESTGFQGETQNASVHFTAKGPDR 701
gi|577742 C09G5.6, similar to Collagen
Length = 963
Local hits (HSPs): __ __ __ __
__________________________________________________
Database sequence: | | | | | | | | 963
0 150 300 450 600 750 900
Minus Strand HSPs:
Score = 44 (20.2 bits), Expect = 17., Sum P(4) = 1.0
Identities = 10/26 (38%), Positives = 14/26 (53%), Frame = -1
Query: 845 RDSNSRPRPWQGRALPTELFPHSSSN 768
R+ S RP+ + P+ PHSS N
Sbjct: 180 REPASSRRPYPPQQPPSTSAPHSSPN 205
Score = 38 (17.5 bits), Expect = 17., Sum P(4) = 1.0
Identities = 8/20 (40%), Positives = 10/20 (50%), Frame = -2
Query: 268 QTGYSGSSGVPENHRTSQSP 209
Q G G+ G P H + SP
Sbjct: 469 QDGQPGAPGAPGYHGMNGSP 488
Score = 37 (17.0 bits), Expect = 17., Sum P(4) = 1.0
Identities = 10/30 (33%), Positives = 11/30 (36%), Frame = -2
Query: 577 TESVPQPQRKVQYRRTQPKCSDATAAMPTP 488
T + P P Q R P SD TP
Sbjct: 316 TRNPPNPTNTRQPSRPVPPTSDGHIEATTP 345
Score = 36 (16.6 bits), Expect = 17., Sum P(4) = 1.0
Identities = 10/29 (34%), Positives = 16/29 (55%), Frame = -3
Query: 168 GDRQIKDQYKEWDKDDTEQCKQRRDIKLH 82
GD++ K+Q + D E+ K+R K H
Sbjct: 838 GDKRKKNQPEYEDISKPEEDKERAMEKHH 866
sp|P20715|HMDH_XENLA|gi|123347 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE
(HMG-COA REDUCTASE).
Length = 883
Cluster: 339.32 3-hydroxy-3-methylglutaryl 3-hydroxy-3-methylglutaryl-coenzyme human hydroxymethylglutaryl-coa coenzyme 1 2 a reductase hmg-coa
Cluster: 339.34 3-hydroxy-3-methylglutaryl-coenzyme human hydroxymethylglutaryl-coa 1 2 a nadph reductase ec hmg-coa
Cluster: 339.35 3-hydroxy-3-methylglutaryl-coenzyme hydroxymethylglutaryl-coa nadph a reductase 2 hmg-coa hmgr 1.1.1.34 ec
Conserved regions:
Cluster 339.32 | _____ ____ _______|
Cluster 339.34 |__ __________ _|
Cluster 339.35 |_ __|
Local hits (HSPs): __ __
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 883
0 150 300 450 600 750
__________________
Annotated Domains:
Entrez Domain: MEMBRANE-BOUND. 1..341
Entrez Domain: LINKER. 342..444
Entrez Domain: CATALYTIC. 445..883
Entrez Transmembrane region 10..39
Entrez Transmembrane region 57..78
Entrez Transmembrane region 90..114
Entrez Transmembrane region 124..149
Entrez Transmembrane region 160..187
Entrez Transmembrane region 192..220
Entrez Transmembrane region 315..339
Entrez active site 554
Entrez active site 762
Entrez active site: GENERAL BASE. 861
PFAM HMG-CoA_red1: Hydroxymethylglutaryl-coen 634..666
PFAM HMG-CoA_red2: Hydroxymethylglutaryl-coen 776..804
PRINTS HMGCOARDTASE1: HMG-CoA reductase motif I 521..542
PRINTS HMGCOARDTASE2: HMG-CoA reductase motif I 548..568
PRINTS HMGCOARDTASE3: HMG-CoA reductase motif I 639..657
PRINTS HMGCOARDTASE4: HMG-CoA reductase motif I 679..704
PRINTS HMGCOARDTASE5: HMG-CoA reductase motif V 730..756
PRINTS HMGCOARDTASE6: HMG-CoA reductase motif V 785..806
BLOCKS BL00066A: Hydroxymethylglutaryl-coenzyme 88..97
BLOCKS BL00066B: Hydroxymethylglutaryl-coenzyme 534..586
BLOCKS BL00066C: Hydroxymethylglutaryl-coenzyme 623..660
BLOCKS BL00066D: Hydroxymethylglutaryl-coenzyme 670..718
BLOCKS BL00066E: Hydroxymethylglutaryl-coenzyme 730..777
BLOCKS BL00066F: Hydroxymethylglutaryl-coenzyme 826..867
PROSITE HMG_COA_REDUCTASE_1: Hydroxymethylglutar 641..655
PROSITE HMG_COA_REDUCTASE_2: Hydroxymethylglutar 797..804
PROSITE HMG_COA_REDUCTASE_3: Hydroxymethylglutar 851..864
PROSITE PROKAR_LIPOPROTEIN: Prokaryotic membrane 511..521
__________________
Plus Strand HSPs:
Score = 58 (26.7 bits), Expect = 18., Sum P(2) = 1.0
Identities = 10/30 (33%), Positives = 20/30 (66%), Frame = +1
Query: 280 DPVADKVLVAIAMVLVTEHYHSWWVTLPAA 369
+PV +V + +++ LV H HS W++ P++
Sbjct: 251 NPVTQRVKMIMSLGLVLVHAHSRWISEPSS 280
Score = 41 (18.9 bits), Expect = 18., Sum P(2) = 1.0
Identities = 7/20 (35%), Positives = 15/20 (75%), Frame = +2
Query: 662 KVVKNIVDSSRQVSRMQRIE 721
KV+K+ DS+ + +R+ R++
Sbjct: 611 KVIKDAFDSTSRFARLGRLQ 630
sp|P22726|WN5B_MOUSE|gi|139724 WNT-5B PROTEIN PRECURSOR.
Length = 372
Cluster: 76.79 wnt-5b xwnt-5c wnt-5a protein xwnt-5a precursor xenopus zebrafish peptide aa
Cluster: 76.92 wnt-3a wnt-5b wnt-5a gene protein product precursor peptide partial aa
Conserved regions:
Cluster 76.79 |__ __ __|
Cluster 76.92 | _|
Local hits (HSPs): __ ___ __
Annotated Domains: ___________________________________________
__________________________________________________
Database sequence: | | | | 372
0 150 300
__________________
Annotated Domains:
Entrez glycosylation site 106
Entrez glycosylation site 112
Entrez glycosylation site 304
Entrez glycosylation site 318
PFAM wnt: wnt family of developmental signali 60..372
BLOCKS BL00246A: Wnt-1 family proteins. 88..107
BLOCKS BL00246B: Wnt-1 family proteins. 123..157
BLOCKS BL00246C: Wnt-1 family proteins. 169..193
BLOCKS BL00246D: Wnt-1 family proteins. 210..262
BLOCKS BL00246E: Wnt-1 family proteins. 326..371
PROSITE WNT1: Wnt-1 family signature. 230..239
__________________
Plus Strand HSPs:
Score = 49 (22.5 bits), Expect = 19., Sum P(3) = 1.0
Identities = 8/12 (66%), Positives = 8/12 (66%), Frame = +2
Query: 470 KPLPRWWRWHGC 505
K LPR W W GC
Sbjct: 163 KDLPRDWLWGGC 174
Score = 37 (17.0 bits), Expect = 19., Sum P(3) = 1.0
Identities = 6/7 (85%), Positives = 6/7 (85%), Frame = +3
Query: 597 ERCACRF 617
ERC CRF
Sbjct: 345 ERCHCRF 351
Score = 36 (16.6 bits), Expect = 19., Sum P(3) = 1.0
Identities = 7/10 (70%), Positives = 7/10 (70%), Frame = +1
Query: 232 FLARRWNQST 261
F RRWN ST
Sbjct: 100 FRQRRWNCST 109
sp|P15822|ZEP1_HUMAN|gi|141697 ZINC FINGER PROTEIN 40 (HUMAN IMMUNODEFICIENCY
VIRUS TYPE I ENHANCER-BINDING PROTEIN 1) (HIV-EP1) (MAJOR
HISTOCOMPATIBILITY COMPLEX BINDING PROTEIN 1) (MBP-1) (POSITIVE
REGULATORY DOMAIN II BINDING FACTOR 1) (PRDII-BF1).
Length = 2717
Cluster: 1302.9 zinc finger virus major protein type histocompatibility enhancer-binding binding 1
Cluster: 1302.12 dna-binding zinc finger major protein histocompatibility enhancer-binding binding 1 2
Conserved regions:
Cluster 1302.9 |___ |
Cluster 1302.12 |_|
Local hits (HSPs): __ _
Annotated Domains: __ _ __ __
__________________________________________________
Database sequence: | | | | | | | 2717
0 500 1000 1500 2000 2500
__________________
Annotated Domains:
Entrez Domain: ZINC-FINGERS. 406..456
Entrez Zinc finger region: C2H2-TYPE. 406..428
Entrez Zinc finger region: C2H2-TYPE. 434..456
Entrez Domain: POLY-SER. 803..806
Entrez Zinc finger region: C2HC-TYPE. 958..981
Entrez Domain: ZINC-FINGERS. 2087..2139
Entrez Zinc finger region: C2H2-TYPE. 2087..2109
Entrez Zinc finger region: C2H2-TYPE. 2115..2139
PFAM zf-C2H2: Zinc finger, C2H2 type 406..428
PFAM zf-C2H2: Zinc finger, C2H2 type 434..456
PFAM zf-C2H2: Zinc finger, C2H2 type 958..981
PFAM zf-C2H2: Zinc finger, C2H2 type 2087..2109
PFAM zf-C2H2: Zinc finger, C2H2 type 2115..2139
PRINTS ZINCFINGER1: First half of finger motif 433..446
PRINTS ZINCFINGER2: Second half of finger motif 2102..2111
BLOCKS BL00028: Zinc finger, C2H2 type, domain 436..452
__________________
Minus Strand HSPs:
Score = 57 (26.2 bits), Expect = 21., Sum P(2) = 1.0
Identities = 12/35 (34%), Positives = 18/35 (51%), Frame = -3
Query: 294 ICHRVKESTKPGTLVPAACQKTIEPVSHRRDAENE 190
+CHR K PG + P KT+E + ++NE
Sbjct: 721 LCHREKALLLPGQMRPPLATKTLEERISKLISDNE 755
Score = 45 (20.7 bits), Expect = 21., Sum P(2) = 1.0
Identities = 8/26 (30%), Positives = 13/26 (50%), Frame = -3
Query: 552 EKCNTGVLNPNVRTPQQPCQRHHLGS 475
E+C++ L+ RT C H G+
Sbjct: 161 EQCDSSSLSSKTRTDNSECISSHCGT 186
sp|Q05556|CPAB_RABIT|gi|544086 CYTOCHROME P450 IIA11 (P450-IIA11).
Length = 494
Cluster: 167.56 cytochrome testosterone ec p-450 coumarin p450 1.14.14.- naphthalene hydroxylase phenobarbital-inducible
Cluster: 167.57 cytochrome p-450 testosterone ec coumarin p450 1.14.14.- naphthalene phenobarbital-inducible s-mephenytoin
Cluster: 167.59 cytochrome p-450 testosterone ec coumarin p450 1.14.14.- naphthalene phenobarbital-inducible s-mephenytoin
Conserved regions:
Cluster 167.56 |_ ___ ________ ____ ____ _____|
Cluster 167.57 |______________ |
Cluster 167.59 | __ ___|
Local hits (HSPs): ______
Annotated Domains: __ _______________________________________________
__________________________________________________
Database sequence: | | | | | 494
0 150 300 450
__________________
Annotated Domains:
Entrez binding site: HEME. 439
PFAM p450: Cytochrome P450 34..491
PRINTS EP450I1: E-class P450 group I motif I - 62..81
PRINTS EP450I2: E-class P450 group I motif II - 86..107
PRINTS EP450I3: E-class P450 group I motif III 177..195
PRINTS EP450I4: E-class P450 group I motif IV - 290..307
PRINTS P4501: P450 superfamily motif I - 4 301..318
PRINTS EP450I5: E-class P450 group I motif V - 310..336
PRINTS P4502: P450 superfamily motif II - 4 319..332
PRINTS EP450I6: E-class P450 group I motif VI - 353..371
PRINTS P4503: P450 superfamily motif III - 4 354..365
PRINTS EP450I7: E-class P450 group I motif VII 394..418
PRINTS EP450I8: E-class P450 group I motif VIII 429..439
PRINTS P4504: P450 superfamily motif IV - 4 430..439
PRINTS EP450I9: E-class P450 group I motif IX - 439..462
PRINTS P4505: P450 superfamily motif V - 4 439..450
BLOCKS BL00086: Cytochrome P450 cysteine heme-i 429..460
PROSITE CYTOCHROME_P450: Cytochrome P450 cystein 432..441
PROSITE PROKAR_LIPOPROTEIN: Prokaryotic membrane 4..14
__________________
Plus Strand HSPs:
Score = 63 (29.0 bits), Expect = 21., P = 1.0
Identities = 18/57 (31%), Positives = 26/57 (45%), Frame = +1
Query: 175 PFAAALIFCVAAVTDWFDGFLARRWNQSTRFGAFLDPVADKVLVAIAMVLVTEHYHS 345
P+ A+I + TD LARR + T+F FL P +V + VL + S
Sbjct: 350 PYTEAVIHEIQRFTDMIPMGLARRVTRDTKFRDFLLPKGTEVFPMLGSVLKDPKFFS 406
sp|P16766|UL35_HCMVA|gi|136891 HYPOTHETICAL PROTEIN UL35.
Length = 640
Local hits (HSPs): _______
Annotated Domains: _ _ _
__________________________________________________
Database sequence: | | | | | | 640
0 150 300 450 600
__________________
Annotated Domains:
Entrez glycosylation site 208
PROSITE TYR_PHOSPHO_SITE: Tyrosine kinase phosph 106..113
PROSITE TYR_PHOSPHO_SITE: Tyrosine kinase phosph 271..277
__________________
Minus Strand HSPs:
Score = 63 (29.0 bits), Expect = 22., P = 1.0
Identities = 20/75 (26%), Positives = 34/75 (45%), Frame = -2
Query: 679 DIFHHF*SFAENYAETITDQANLHAQRSNIATLTTESVPQPQRKVQYRRTQPKCSDATAA 500
+I H FA+ + +TD A+ + S+ ++ + SV P + RT S T+A
Sbjct: 480 EITEHRDLFADVFRRPVTDAASSSSASSSSSSASPNSVSLPSARSSSTRTTTPASTYTSA 539
Query: 499 MPTPPSGQWFSLSQS 455
+ +G S S S
Sbjct: 540 GTSSTTGLLLSSSLS 554
sp|P09615|WNTG_DROME|gi|139777 PROTEIN DINT-1 PRECURSOR (WINGLESS PROTEIN).
Length = 468
Cluster: 546.24 wnt-11 wnt-4 wnt-1 dint-1 proto-oncogene protein wingless precursor peptide aa
Conserved regions:
Cluster 546.24 |__ _______ _____ __|
Local hits (HSPs): ___ ___ __
Annotated Domains: _________________________ ___________
__________________________________________________
Database sequence: | | | | | 468
0 150 300 450
__________________
Annotated Domains:
Entrez glycosylation site 103
Entrez glycosylation site 108
Entrez glycosylation site 414
PFAM wnt: wnt family of developmental signali 56..275
PFAM wnt: wnt family of developmental signali 370..468
BLOCKS BL00246A: Wnt-1 family proteins. 85..104
BLOCKS BL00246B: Wnt-1 family proteins. 123..157
BLOCKS BL00246C: Wnt-1 family proteins. 180..204
BLOCKS BL00246D: Wnt-1 family proteins. 213..265
BLOCKS BL00246E: Wnt-1 family proteins. 422..467
PROSITE WNT1: Wnt-1 family signature. 233..242
__________________
Plus Strand HSPs:
Score = 43 (19.8 bits), Expect = 24., Sum P(3) = 1.0
Identities = 7/11 (63%), Positives = 8/11 (72%), Frame = +3
Query: 585 VAIFERCACRF 617
V + ERCAC F
Sbjct: 437 VVVVERCACTF 447
Score = 42 (19.3 bits), Expect = 24., Sum P(3) = 1.0
Identities = 9/19 (47%), Positives = 12/19 (63%), Frame = +1
Query: 208 AVTDWFDGFLARRWNQSTR 264
A+++ F RRWN STR
Sbjct: 89 AISECQHQFRNRRWNCSTR 107
Score = 38 (17.5 bits), Expect = 24., Sum P(3) = 1.0
Identities = 7/15 (46%), Positives = 7/15 (46%), Frame = +2
Query: 482 RWWRWHGCCGVRTFG 526
R W W GC FG
Sbjct: 178 RDWEWGGCSDNIGFG 192
bbs|140967|gi|455944 wingless protein=wg/wingless wgIN67 [Drosophila, Peptide
Mutant, 468 aa]
Length = 468
Local hits (HSPs): ___ ___ __
__________________________________________________
Database sequence: | | | | | 468
0 150 300 450
Plus Strand HSPs:
Score = 43 (19.8 bits), Expect = 24., Sum P(3) = 1.0
Identities = 7/11 (63%), Positives = 8/11 (72%), Frame = +3
Query: 585 VAIFERCACRF 617
V + ERCAC F
Sbjct: 437 VVVVERCACTF 447
Score = 42 (19.3 bits), Expect = 24., Sum P(3) = 1.0
Identities = 9/19 (47%), Positives = 12/19 (63%), Frame = +1
Query: 208 AVTDWFDGFLARRWNQSTR 264
A+++ F RRWN STR
Sbjct: 89 AISECQHQFRNRRWNCSTR 107
Score = 38 (17.5 bits), Expect = 24., Sum P(3) = 1.0
Identities = 7/15 (46%), Positives = 7/15 (46%), Frame = +2
Query: 482 RWWRWHGCCGVRTFG 526
R W W GC FG
Sbjct: 178 RDWEWGGCSDNIGFG 192
sp|P35503|UD1C_HUMAN|gi|549152 UDP-GLUCURONOSYLTRANSFERASE 1C PRECURSOR,
MICROSOMAL (UDPGT) (UGT1C) (UGT1*3).
Length = 534
Cluster: 1040.13 udp-glucuronosyltransferase precursor bilirubin microsomal peptide 1a udpgt aa specific isozyme
Cluster: 1040.14 udp-glucuronosyltransferase precursor 1f bilirubin microsomal peptide udpgt aa specific isozyme
Conserved regions:
Cluster 1040.13 | ________________________|
Cluster 1040.14 |_ __ __________________|
Local hits (HSPs): ___ __
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | 534
0 150 300 450
__________________
Annotated Domains:
Entrez Transmembrane region 492..508
Entrez glycosylation site 119
Entrez glycosylation site 142
Entrez glycosylation site 296
Entrez glycosylation site 348
PFAM UDPGT: UDP-glucoronosyl and UDP-glucosyl 29..526
BLOCKS BL00375A: UDP-glycosyltransferases prote 39..61
BLOCKS BL00375B: UDP-glycosyltransferases prote 128..168
BLOCKS BL00375C: UDP-glycosyltransferases prote 190..213
BLOCKS BL00375D: UDP-glycosyltransferases prote 254..281
BLOCKS BL00375E: UDP-glycosyltransferases prote 294..343
BLOCKS BL00375F: UDP-glycosyltransferases prote 349..393
BLOCKS BL00375G: UDP-glycosyltransferases prote 448..487
PROSITE UDPGT: UDP-glycosyltransferases signatur 355..398
__________________
Minus Strand HSPs:
Score = 52 (23.9 bits), Expect = 26., Sum P(2) = 1.0
Identities = 10/29 (34%), Positives = 16/29 (55%), Frame = -2
Query: 640 AETITDQANLHAQRSNIATLTTESVPQPQ 554
A +T + N+H + N TLTT ++ Q
Sbjct: 58 AVVLTPEVNMHIKEENFFTLTTYAISWTQ 86
Score = 44 (20.2 bits), Expect = 26., Sum P(2) = 1.0
Identities = 10/22 (45%), Positives = 13/22 (59%), Frame = -1
Query: 500 HANATIWAVVFTFPIQETATLL 435
H NAT + VV T P+ A +L
Sbjct: 140 HLNATSFDVVLTDPVNLCAAVL 161
sp|P00744|PRTZ_BOVIN|gi|131090 VITAMIN K-DEPENDENT PROTEIN Z.
Length = 396
Cluster: 3591.3 factor plasma vitamin k-dependent l x1 protein z precursor
Conserved regions:
Cluster 3591.3 | ____ __ |
Local hits (HSPs): _______ _____
Annotated Domains: ________________ _________________________________
__________________________________________________
Database sequence: | | | | 396
0 150 300
__________________
Annotated Domains:
Entrez Domain: EGF-LIKE 1. 47..83
Entrez Domain: EGF-LIKE 2. 85..126
Entrez Domain: TRYPSIN-LIKE. 143..396
Entrez gamma-carboxyglutamic-acid site 7
Entrez gamma-carboxyglutamic-acid site 8
Entrez gamma-carboxyglutamic-acid site 11
Entrez gamma-carboxyglutamic-acid site 15
Entrez gamma-carboxyglutamic-acid site 17
Entrez gamma-carboxyglutamic-acid site 20
Entrez gamma-carboxyglutamic-acid site 21
Entrez gamma-carboxyglutamic-acid site 26
Entrez gamma-carboxyglutamic-acid site 27
Entrez gamma-carboxyglutamic-acid site 30
Entrez gamma-carboxyglutamic-acid site 33
Entrez gamma-carboxyglutamic-acid site 36
Entrez gamma-carboxyglutamic-acid site 40
Entrez hydroxylation site 64
Entrez glycosylation site: XYLOSE(2)-GLUCOSE. 53
Entrez glycosylation site 59
Entrez glycosylation site 191
Entrez glycosylation site 289
Entrez glycosylation site 388
PFAM gla: Vitamin K-dependent carboxylation/g 6..47
PFAM EGF: EGF-like domain 51..82
PFAM EGF: EGF-like domain 89..125
PFAM trypsin: Trypsin 146..352
PRINTS GLABLOOD1: Coagulation factor Gla domain 5..18
PRINTS GLABLOOD2: Coagulation factor Gla domain 19..32
PRINTS GLABLOOD3: Coagulation factor Gla domain 33..47
PRINTS EGFBLOOD1: Type II EGF-like repeat motif 47..58
PRINTS EGFBLOOD2: Type II EGF-like repeat motif 59..66
PRINTS EGFBLOOD3: Type II EGF-like repeat motif 67..77
PRINTS EGFBLOOD4: Type II EGF-like repeat motif 78..84
BLOCKS BL00022A: EGF-like domain proteins. 56..62
BLOCKS BL00022B: EGF-like domain proteins. 71..77
PROSITE ASX_HYDROXYL: Aspartic acid and asparagi 62..73
PROSITE GLU_CARBOXYLATION: Vitamin K-dependent c 5..42
PROSITE EGF_1: EGF-like domain signature 1. 71..82
PROSITE EGF_2: EGF-like domain signature 2. 71..82
__________________
Minus Strand HSPs:
Score = 45 (20.7 bits), Expect = 30., Sum P(3) = 1.0
Identities = 12/42 (28%), Positives = 14/42 (33%), Frame = -3
Query: 576 QSQYRSHKEKCNTGVLNPNVRTPQQPCQRHHLGSGFHFPNPG 451
Q R + C G PN + C L HF PG
Sbjct: 63 QDSIRGYACTCAPGYEGPNCAFAESECHPLRLDGCQHFCYPG 104
Score = 40 (18.4 bits), Expect = 30., Sum P(3) = 1.0
Identities = 7/20 (35%), Positives = 11/20 (55%), Frame = -1
Query: 275 KAPNRVLWFQRRARKPSNQS 216
K P LW ++ ++PS S
Sbjct: 344 KVPRYALWLRQVTQQPSRAS 363
Score = 36 (16.6 bits), Expect = 30., Sum P(3) = 1.0
Identities = 9/19 (47%), Positives = 10/19 (52%), Frame = -3
Query: 216 SHRRDAENERGGKRRPGDR 160
S R D R G+ PGDR
Sbjct: 363 SPRGDRGQGRDGEPVPGDR 381
sp|P09346|KNOB_PLAFG|gi|125516 KNOB-ASSOCIATED HISTIDINE-RICH PROTEIN
PRECURSOR (KAHRP).
Length = 634
Local hits (HSPs): __ ____
Annotated Domains: _______ ____ __ ______ ____
__________________________________________________
Database sequence: | | | | | | 634
0 150 300 450 600
__________________
Annotated Domains:
Entrez Domain: HIS-RICH. 61..116
Entrez Domain: 13 AA TANDEM REPEATS. 370..438
Entrez Domain: 4 X 10 AA APPROXIMATE TANDEM REP 540..580
Entrez glycosylation site 42
PROSITE TYR_PHOSPHO_SITE: Tyrosine kinase phosph 152..158
PROSITE TYR_PHOSPHO_SITE: Tyrosine kinase phosph 173..180
PROSITE TYR_PHOSPHO_SITE: Tyrosine kinase phosph 174..180
PROSITE TYR_PHOSPHO_SITE: Tyrosine kinase phosph 292..299
__________________
Minus Strand HSPs:
Score = 59 (27.1 bits), Expect = 31., Sum P(2) = 1.0
Identities = 12/39 (30%), Positives = 20/39 (51%), Frame = -3
Query: 204 DAENERGGKRRPGDRQIKDQYKEWDKDDTEQCKQRRDIK 88
DAE+ + K + D + K K D +D E K ++ +K
Sbjct: 400 DAESVKSKKHKSHDCEKKKSKKHKDNEDAESVKSKKSVK 438
Score = 37 (17.0 bits), Expect = 31., Sum P(2) = 1.0
Identities = 7/12 (58%), Positives = 7/12 (58%), Frame = -2
Query: 271 HQTGYSGSSGVP 236
H GYS GVP
Sbjct: 323 HGAGYSAPYGVP 334
sp|P13818|KNOB_PLAFX|gi|125518 KNOB-ASSOCIATED HISTIDINE-RICH PROTEIN
PRECURSOR (KAHRP) (KP).
Length = 634
Local hits (HSPs): __ ____
Annotated Domains: _______ ____ __ ______ ____
__________________________________________________
Database sequence: | | | | | | 634
0 150 300 450 600
__________________
Annotated Domains:
Entrez Domain: HIS-RICH. 61..116
Entrez Domain: 13 AA TANDEM REPEATS. 370..438
Entrez Domain: 4 X 10 AA APPROXIMATE TANDEM REP 540..580
Entrez glycosylation site 42
PROSITE TYR_PHOSPHO_SITE: Tyrosine kinase phosph 152..158
PROSITE TYR_PHOSPHO_SITE: Tyrosine kinase phosph 173..180
PROSITE TYR_PHOSPHO_SITE: Tyrosine kinase phosph 174..180
PROSITE TYR_PHOSPHO_SITE: Tyrosine kinase phosph 292..299
__________________
Minus Strand HSPs:
Score = 59 (27.1 bits), Expect = 31., Sum P(2) = 1.0
Identities = 12/39 (30%), Positives = 20/39 (51%), Frame = -3
Query: 204 DAENERGGKRRPGDRQIKDQYKEWDKDDTEQCKQRRDIK 88
DAE+ + K + D + K K D +D E K ++ +K
Sbjct: 400 DAESVKSKKHKSHDCEKKKSKKHKDNEDAESVKSKKSVK 438
Score = 37 (17.0 bits), Expect = 31., Sum P(2) = 1.0
Identities = 7/12 (58%), Positives = 7/12 (58%), Frame = -2
Query: 271 HQTGYSGSSGVP 236
H GYS GVP
Sbjct: 323 HGAGYSAPYGVP 334
gi|488833 zinc finger protein 51
Length = 710
Cluster: 28.54 gastrula oocyte zinc finger protein 51 xlcgf58.1 xlcof22
Cluster: 28.107 gastrula oocyte znf37a zinc finger protein zfp-37 znf133 znf140 xlcof8.4
Cluster: 28.141 gastrula oocyte zinc-finger transcriptional zinc finger putative protein mkr5 placental
Conserved regions:
Cluster 28.54 | _ __ _ __ _____ ____|
Cluster 28.107 |_______ |
Cluster 28.141 | ___|
Local hits (HSPs): ____ __ ___
__________________________________________________
Database sequence: | | | | | | 710
0 150 300 450 600
Minus Strand HSPs:
Score = 50 (23.0 bits), Expect = 32., Sum P(3) = 1.0
Identities = 9/30 (30%), Positives = 17/30 (56%), Frame = -3
Query: 546 CNTGVLNPNVRTPQQPCQRHHLGSGFHFPN 457
C ++ +V+T ++ CQ + LG H P+
Sbjct: 15 CICDTVHQHVKTEKESCQGNKLGEMLHEPS 44
Score = 39 (17.9 bits), Expect = 32., Sum P(3) = 1.0
Identities = 8/22 (36%), Positives = 11/22 (50%), Frame = -3
Query: 240 CQKTIEPVSHRRDAENERGGKR 175
C K+ VSH R + G+R
Sbjct: 541 CDKSFTQVSHLRTHQRVHTGER 562
Score = 36 (16.6 bits), Expect = 32., Sum P(3) = 1.0
Identities = 6/19 (31%), Positives = 12/19 (63%), Frame = -3
Query: 138 EWDKDDTEQCKQRRDIKLH 82
E+DK +T+ +R ++H
Sbjct: 680 EYDKPNTQDSNLKRHQRVH 698
prf||1705218D|gi|227508 Wnt-6 gene
Length = 365
Cluster: 76.93 wingless wnt-1 wnt-2 wnt-6 wnt-b xwnt-6 gene protein rerio precursor
Conserved regions:
Cluster 76.93 |___ _______ |
Local hits (HSPs): ___ ___ ___
__________________________________________________
Database sequence: | | | | 365
0 150 300
Plus Strand HSPs:
Score = 47 (21.6 bits), Expect = 33., Sum P(3) = 1.0
Identities = 9/21 (42%), Positives = 12/21 (57%), Frame = +3
Query: 555 CGCGTDSVVNVAIFERCACRF 617
CG G + +V + E C CRF
Sbjct: 324 CGRGHRAQESVQLEENCLCRF 344
Score = 37 (17.0 bits), Expect = 33., Sum P(3) = 1.0
Identities = 8/15 (53%), Positives = 9/15 (60%), Frame = +1
Query: 232 FLARRWNQSTRFGAF 276
F RRWN S+ AF
Sbjct: 79 FRFRRWNCSSHSKAF 93
Score = 36 (16.6 bits), Expect = 33., Sum P(3) = 1.0
Identities = 6/13 (46%), Positives = 6/13 (46%), Frame = +2
Query: 488 WRWHGCCGVRTFG 526
W W GC FG
Sbjct: 166 WEWGGCGDDVDFG 178
gi|347377 MLL-AF4 der(11) fusion protein
Length = 2311
Local hits (HSPs): _ _ __
__________________________________________________
Database sequence: | | | | | | 2311
0 500 1000 1500 2000
Minus Strand HSPs:
Score = 46 (21.2 bits), Expect = 35., Sum P(3) = 1.0
Identities = 8/17 (47%), Positives = 11/17 (64%), Frame = -2
Query: 487 PSGQWFSLSQSRRRPRY 437
P+ +W SL SR P+Y
Sbjct: 656 PTFRWTSLKHSRSEPQY 672
Score = 43 (19.8 bits), Expect = 35., Sum P(3) = 1.0
Identities = 11/27 (40%), Positives = 14/27 (51%), Frame = -1
Query: 245 RRARKPSNQSVTAATQKMSAAANGDQV 165
R R P QS TQ++ AAA +V
Sbjct: 1628 RHQRAPGAQSPHGGTQRVRAAATVPRV 1654
Score = 43 (19.8 bits), Expect = 35., Sum P(3) = 1.0
Identities = 10/36 (27%), Positives = 18/36 (50%), Frame = -3
Query: 183 GKRRPGDRQIKDQYKEWDKDDTEQCKQRRDIKLHND 76
G +PG Q+K ++ D E+ K ++ +L D
Sbjct: 2048 GNSKPGKPQVKFDKQQADLHMREEKKMKQKAELMTD 2083
gi|443822 H,K-ATPase
Length = 1042
Cluster: 217.43 sodium/potassium-transporting sodium alpha-1 alpha atpase chain subunit proton pump na+/k+
Cluster: 217.44 sodium/potassium-transporting sodium alpha-1 alpha atpase chain subunit proton pump na+/k+
Cluster: 217.45 sodium/potassium-transporting sodium alpha-1 alpha atpase chain subunit k+ pump na+/k+
Conserved regions:
Cluster 217.43 | ____ ____ _ ___ ______ _|
Cluster 217.44 |_ ____ ____ _ |
Cluster 217.45 | ____ |
Local hits (HSPs): _ __ ___
__________________________________________________
Database sequence: | | | | | | | | 1042
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 44 (20.2 bits), Expect = 37., Sum P(3) = 1.0
Identities = 12/42 (28%), Positives = 19/42 (45%), Frame = +1
Query: 523 WVEYAGIALFFVAAVLTLWSMLQYLSAARADLLDQ*SFRRNF 648
++E+ G FFV+ V+ + L R + Q FR F
Sbjct: 931 FLEWTGYTAFFVSIVVEQLADLIIRKTRRNSVFQQGLFRNKF 972
Score = 43 (19.8 bits), Expect = 37., Sum P(3) = 1.0
Identities = 11/33 (33%), Positives = 19/33 (57%), Frame = +1
Query: 391 IISALREWMAELGKRSSVAVSWIGKVKTTAQMV 489
IISA E + ++ KR ++ V + K + A +V
Sbjct: 651 IISAGSETVDDIAKRLNIPVEQVNKREAKAAVV 683
Score = 40 (18.4 bits), Expect = 37., Sum P(3) = 1.0
Identities = 6/12 (50%), Positives = 9/12 (75%), Frame = +3
Query: 162 CHLVAVCRRAHF 197
C +V++C RA F
Sbjct: 440 CKIVSLCNRAEF 451
gi|218415 phosphatidylserine synthase
Length = 276
Local hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | | 276
0 50 100 150 200 250
Plus Strand HSPs:
Score = 61 (28.1 bits), Expect = 37., P = 1.0
Identities = 16/44 (36%), Positives = 23/44 (52%), Frame = +1
Query: 184 AALIFCVAAVTDWFDGFLARRWNQSTRFGAFLDPVADKVLVAIA 315
A +A D+ DG +AR N+S+ G LD +AD V +A
Sbjct: 116 AHFFILLAMCFDFLDGRVARLRNRSSLMGQELDSLADLVSFGVA 159
gi|530088 aminoalcoholphosphotransferase
Length = 389
Cluster: 4944.3 aminoalcoholphosphotransferase ethanolaminephosphotransferase saccharomyces cerevisiae ethpt diacylglycerol sn-1 cholinephosphotransferase 2-diacylglycerol chopt
Conserved regions:
Cluster 4944.3 |_______ ________ _____ _|
Local hits (HSPs): _______
__________________________________________________
Database sequence: | | | | 389
0 150 300
Plus Strand HSPs:
Score = 61 (28.1 bits), Expect = 39., P = 1.0
Identities = 16/45 (35%), Positives = 19/45 (42%), Frame = +1
Query: 160 PVTWSPFAAALIFCVAAVTDWFDGFLARRWNQSTRFGAFLDPVAD 294
P W FA L+ + D DG ARR N S+ G D D
Sbjct: 76 PPRWVHFAHGLLLFLYQTFDAVDGKQARRTNSSSPLGELFDHGCD 120
gi|580702 fixP
Length = 293
Cluster: 4770 ccop fixp fixp=membrane-anchored diheme cytochrome symbiotic nitrogen fixation gene cluster
Conserved regions:
Cluster 4770 |_______ _____ ______ __ __|
Local hits (HSPs): __ ____
__________________________________________________
Database sequence: | | | | | | | 293
0 50 100 150 200 250
Plus Strand HSPs:
Score = 54 (24.8 bits), Expect = 41., Sum P(2) = 1.0
Identities = 7/8 (87%), Positives = 7/8 (87%), Frame = +2
Query: 473 PLPRWWRW 496
PLPRWW W
Sbjct: 34 PLPRWWLW 41
Score = 38 (17.5 bits), Expect = 41., Sum P(2) = 1.0
Identities = 9/21 (42%), Positives = 14/21 (66%), Frame = +2
Query: 809 DLAKVGVASSSLVSRSSLKDI 871
DL K+ ASS+ ++ L+DI
Sbjct: 85 DLQKLRAASSAKLANVPLEDI 105
sp|P10327|CRYW_BACTA|gi|117546 130 KD CRYSTAL PROTEIN (DELTA ENDOTOXIN)
(CRYSTALINE ENTOMOCIDAL PROTOXIN).
Length = 823
Cluster: 198.50 130 parasporal kd protein crystal delta endotoxin crystaline entomocidal protoxin
Cluster: 198.53 130 parasporal kd protein crystal delta endotoxin crystaline entomocidal protoxin
Conserved regions:
Cluster 198.50 |___ ___ _______ ________________|
Cluster 198.53 | __ ________|
Local hits (HSPs): __
Annotated Domains: ______________________________________
__________________________________________________
Database sequence: | | | | | | | 823
0 150 300 450 600 750
__________________
Annotated Domains:
PFAM endotoxin: delta endotoxin 1..616
__________________
Minus Strand HSPs:
Score = 61 (28.1 bits), Expect = 42., P = 1.0
Identities = 10/14 (71%), Positives = 11/14 (78%), Frame = -3
Query: 525 PNVRTPQQPCQRHH 484
P +R QQPCQRHH
Sbjct: 367 PTLRLLQQPCQRHH 380
gi|490199 lepidoptera larvicidal protein
Length = 823
Cluster: 198.50 130 parasporal kd protein crystal delta endotoxin crystaline entomocidal protoxin
Cluster: 198.53 130 parasporal kd protein crystal delta endotoxin crystaline entomocidal protoxin
Conserved regions:
Cluster 198.50 |___ ___ _______ ________________|
Cluster 198.53 | __ ________|
Local hits (HSPs): __
__________________________________________________
Database sequence: | | | | | | | 823
0 150 300 450 600 750
Minus Strand HSPs:
Score = 61 (28.1 bits), Expect = 42., P = 1.0
Identities = 10/14 (71%), Positives = 11/14 (78%), Frame = -3
Query: 525 PNVRTPQQPCQRHH 484
P +R QQPCQRHH
Sbjct: 367 PTLRLLQQPCQRHH 380
gi|291529 tegument protein
Length = 841
Cluster: 7006.2 positional tegument transcriptional regulator homolog ie63 of protein icp27 ul69
Conserved regions:
Cluster 7006.2 | _____ __ _ |
Local hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | | | 841
0 150 300 450 600 750
Minus Strand HSPs:
Score = 61 (28.1 bits), Expect = 42., P = 1.0
Identities = 17/38 (44%), Positives = 19/38 (50%), Frame = -2
Query: 556 QRKVQYRRTQPKCSDATAAMPTPPSGQWFSLSQSRRRP 443
Q+ Q T K S TAAMP PPS S + RRP
Sbjct: 595 QQSQQQPETTSKESSKTAAMPPPPSPCSPSPASRERRP 632
sp|P31287|WNT6_XENLA|gi|401424 XWNT-6 PROTEIN.
Length = 129
Cluster: 76.93 wingless wnt-1 wnt-2 wnt-6 wnt-b xwnt-6 gene protein rerio precursor
Conserved regions:
Cluster 76.93 |________ _____ __________ |
Local hits (HSPs): _____________ ___________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 129
0 50 100
__________________
Annotated Domains:
Entrez glycosylation site 92
PFAM wnt: wnt family of developmental signali 1..129
PROSITE WNT1: Wnt-1 family signature. 3..12
__________________
Plus Strand HSPs:
Score = 44 (20.2 bits), Expect = 44., Sum P(2) = 1.0
Identities = 10/33 (30%), Positives = 15/33 (45%), Frame = +3
Query: 141 CIGLLSACHLVAVCRRAHFLRRGGD*LVRWFSG 239
C GL +C ++ R GD L+ F+G
Sbjct: 5 CHGLSGSCTFTTCWKKMPHFREVGDRLLERFNG 37
Score = 43 (19.8 bits), Expect = 44., Sum P(2) = 1.0
Identities = 9/25 (36%), Positives = 10/25 (40%), Frame = +3
Query: 543 CTFLCGCGTDSVVNVAIFERCACRF 617
C LC V + E C CRF
Sbjct: 101 CDLLCCGRGQREETVVVEENCLCRF 125
Parameters:
-gi
-echofilter
H=1
E=50
V=50
B=50
-ctxfactor=6.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.319 0.135 0.396
+3 0 BLOSUM62 0.319 0.135 0.396 0.362 0.162 0.608
+2 0 BLOSUM62 0.319 0.135 0.396 0.348 0.151 0.559
+1 0 BLOSUM62 0.319 0.135 0.396 0.341 0.147 0.485
-1 0 BLOSUM62 0.319 0.135 0.396 0.340 0.141 0.447
-2 0 BLOSUM62 0.319 0.135 0.396 0.350 0.152 0.529
-3 0 BLOSUM62 0.319 0.135 0.396 0.333 0.143 0.459
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 318 318 50. 56 3 12 22 0.10 36
+2 0 318 318 50. 56 3 12 22 0.10 36
+1 0 318 318 50. 56 3 12 22 0.10 36
-1 0 318 318 50. 56 3 12 22 0.10 36
-2 0 318 318 50. 56 3 12 22 0.10 36
-3 0 318 318 50. 56 3 12 22 0.10 36
Statistics:
Query Expected Observed HSPs HSPs
Frame MatID High Score High Score Reportable Reported
+3 0 65 (29.9 bits) 63 (29.0 bits) 9 9
+2 0 65 (29.9 bits) 57 (26.2 bits) 11 11
+1 0 65 (29.9 bits) 945 (434.7 bits) 23 23
-1 0 65 (29.9 bits) 59 (27.1 bits) 5 5
-2 0 65 (29.9 bits) 66 (30.4 bits) 20 20
-3 0 65 (29.9 bits) 61 (28.1 bits) 19 19
Query Neighborhd Word Excluded Failed Successful Overlaps
Frame MatID Words Hits Hits Extensions Extensions Excluded
+3 0 5118 9567919 1875177 7689369 3373 0
+2 0 6067 9861874 2095365 7760966 5543 5
+1 0 5374 9031376 1875308 7149673 6395 7
-1 0 3767 7828582 1291609 6531023 5950 5
-2 0 4274 9510270 1839648 7663878 6744 51
-3 0 5420 10605557 2059057 8539356 7144 22
Database: /local/dot5/sl_home/beauty/seqdb/blast-db/CRSeqAnnot.fa
Release date: unknown
Posted date: 4:10 PM CDT Jun 27, 1995
# of letters in database: 28,902,124
# of sequences in database: 78,469
# of database sequences satisfying E: 42
No. of states in DFA: 596 (59 KB)
Total size of DFA: 326 KB (384 KB)
Time to generate neighborhood: 0.03u 0.01s 0.04t Real: 00:00:00
No. of processors used: 4
Time to search database: 92.89u 0.10s 92.99t Real: 00:00:31
Back to BCM Search Launcher: Protein Sequence/Pattern SearchesKim C. Worley and Michael McLeod, Human Genome Sequencing Center, Baylor College of Medicine
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