BLASTP+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.

BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.

BEAUTY Reference:

Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract

Reference:  Gish, Warren (1994-1997).  unpublished.
Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W. Myers, and David J.
Lipman (1990).  Basic local alignment search tool.  J. Mol. Biol. 215:403-10.

Query=          (490 letters)
>
MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIES
MEAALKTVLAELSVEQRXXXXXXXXXXXXXXXXXXXXXXXXLALRPEFAENPNAMFVLWK
DHTAVERSEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIEL
CDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFT
DTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDI
LIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWPLEQLAAQH
PELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRSPNANQRLKGVITDLNLA
TDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPL
QIVASDQCCA

Database:  nr
           416,691 sequences; 127,702,997 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 3 Sequences     : less than 3 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 862 138 |==============================================
   6310 724 141 |===============================================
   3980 583 120 |========================================
   2510 463  92 |==============================
   1580 371  78 |==========================
   1000 293  83 |===========================
    631 210  51 |=================
    398 159  37 |============
    251 122  23 |=======
    158  99  22 |=======
    100  77  14 |====
   63.1  63   8 |==
   39.8  55   5 |=
   25.1  50   6 |==
   15.8  44   6 |==
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 38  <<<<<<<<<<<<<<<<<
   10.0  38   7 |==
   6.31  31   4 |=
   3.98  27   3 |=
   2.51  24   1 |:
   1.58  23   1 |:
   1.00  22   1 |:
   0.63  21   0 |
   0.40  21   0 |
   0.25  21   0 |
   0.16  21   1 |:
   0.10  20   2 |:
  0.063  18   0 |
  0.040  18   0 |
  0.025  18   0 |
  0.016  18   0 |
  0.010  18   0 |
 0.0063  18   0 |
 0.0040  18   0 |
 0.0025  18   1 |:


                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N
gi|66668|pir||KIECRUribulokinase (EC 2.7.1.16) - Escheri...  2464  6.5e-256  1
gi|2507053|sp|P08204|KIRI_ECOLIL-RIBULOKINASE >gi|178624...  2442  1.4e-253  1
gi|125422|sp|P06188|KIRI_SALTYL-RIBULOKINASE >gi|79122|p...  2284  7.8e-237  1
gi|5616308|gb|AAD45717.1|AF160811_5(AF160811) L-ribuloki...   458  2.4e-43   1
gi|2498150|sp|P94524|ARAB_BACSUL-RIBULOKINASE >gi|177001...   442  1.2e-41   1
gi|1924931|emb|CAA61586|(X89408) L-ribulokinase [Bacillu...   431  1.8e-40   1
gi|2905643(AF045244) ribitol kinase [Klebsiella pneumoniae]   210  6.3e-14   1
gi|1077569|pir||S52675probable membrane protein YDR109c ...   101  9.4e-09   3
gi|2293419(AF007800) xylulose kinase [Pseudomonas fluore...   108  2.0e-07   3
gi|2895855(AF045552) xylulokinase [Lactobacillus brevis]      103  4.2e-06   4
gi|2581798(AF001974) xylulose kinase; XylB [Thermoanaero...    88  9.6e-06   4
gi|2905647(AF045245) D-arabinitol kinase [Klebsiella pne...    99  2.9e-05   3
gi|2828496|sp|P39211|XYLB_BACSUXYLULOSE KINASE (XYLULOKI...    87  4.1e-05   3
gi|1175037|sp|P44401|XYLB_HAEINXYLULOSE KINASE (XYLULOKI...    81  0.00017   3
gi|1075455|pir||E64183xylulose kinase (xylulokinase) hom...    81  0.00020   3
gi|4980607|gb|AAD35210.1|AE001697_10(AE001697) sugar kin...    85  0.00025   3
gi|4980782|gb|AAD35372.1|AE001710_7(AE001710) sugar kina...   119  0.00064   1
gi|2648799(AE000982) carbohydrate kinase, FGGY family [A...   100  0.0022    2
gi|139849|sp|P09099|XYLB_ECOLIXYLULOSE KINASE (XYLULOKIN...    73  0.063     3
gi|267426|sp|P29444|XYLB_KLEAEXYLULOSE KINASE (XYLULOKIN...    82  0.080     3
gi|2911003|emb|CAA17496|(AL021958) xylB [Mycobacterium t...    91  0.12      2
gi|145313(K01304) L-ribulokinase (araB) [Escherichia coli]     67  0.53      1
gi|139850|sp|P21939|XYLB_LACPEXYLULOSE KINASE (XYLULOKIN...    77  0.64      2
gi|804654(L42008) xylulose kinase [Bacillus sp.]               82  0.88      2
gi|139851|sp|P27155|XYLB_STAXYXYLULOSE KINASE (XYLULOKIN...    70  0.94      3
gi|1546887|emb|CAB02315|(Z80222) Xylulokinase [Bacillus ...    67  0.94      3
gi|4505991ref|NP_000934.1|pPPIC| peptidylprolyl isomeras...    80  0.95      1
gi|2619021(AF027868) xylulose kinase [Bacillus subtilis]...    84  0.98      1
gi|3122149|sp|O34154|GLPK_ENTFAGLYCEROL KINASE (ATP:GLYC...    84  0.99      1
gi|421644|pir||S30402hypothetical protein 5 - Streptomyc...    75  0.99      1
gi|508521(L34345) xylulokinase [Morganella morganii]           74  0.99      2
gi|5103405|dbj|BAA78926.1|(AP000058) 513aa long hypothet...    81  0.998     2
gi|2960138|emb|CAA18036.1|(AL022121) hypothetical protei...    65  0.998     2
gi|4980950|gb|AAD35528.1|AE001722_12(AE001722) gluconate...    66  0.998     2
gi|231961|sp|P30412|CYPC_MOUSEPEPTIDYL-PROLYL CIS-TRANS ...    77  0.999     1
gi|4580953|gb|AAD24551.1|AF117734_1(AF117734) glycerol k...    82  0.9997    1
gi|120588|sp|P11553|FUCK_ECOLIL-FUCULOKINASE >gi|66670|p...    82  0.9998    2
gi|2493485|sp|P77432|YDEV_ECOLIHYPOTHETICAL SUGAR KINASE...    75  0.99991   2



Locally-aligned regions (HSPs) with respect to query sequence:

Locus_ID               
gi|66668               |__________________________________________________
gi|2507053             |__________________________________________________
gi|125422              |__________________________________________________
gi|5616308             |__________________________________________________
gi|2498150             |__________________________________________________
gi|1924931             |__________________________________________________
gi|2905643             |_________________________________________________ 
gi|1077569             |____________________    __________________________
gi|2293419             |________   ______________________       __________
gi|2895855             |_______    ______        ____________   __________
gi|2581798             |____       ______        _______      ____________
gi|2905647             |____                     ________________________ 
gi|2828496             |________                 ___________    _________ 
gi|1175037             |________              _________      _____________
gi|1075455             |________              _________      _____________
gi|4980607             |____       ____________________        ___________
gi|4980782             |                        __________________________
gi|2648799             |                      ______________    __________
gi|139849              |____                     ________     ___________ 
gi|267426              |____          ___________________     _____       
gi|2911003             |__                                     ___________
gi|145313              |__                                                
gi|139850              |________                 _______                  
gi|804654              |  ______                 ________                 
gi|139851              |____                     ______         __________
gi|1546887             |__                     ________         __________
gi|4505991             |                          __________              
gi|2619021             |                _______________                   
gi|3122149             |                                      ___________ 
gi|421644              |                   __________                     
gi|508521              |                         ____              _______
gi|5103405             |____                    __________________________
gi|2960138             |                ____     _______                  
gi|4980950             |                         ________       _________ 
gi|231961              |                          __________              
gi|4580953             |                                        _________ 
gi|120588              |___                    ______________             
gi|2493485             |____            ____________________              
                        __________________________________________________
Query sequence:        |               |              |              |    | 490
                       0             150            300            450

Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .


 >gi|66668|pir||KIECRU  ribulokinase (EC 2.7.1.16) - Escherichia coli >gi|145304
            (M15263) L-ribulokinase [Escherichia coli] >gi|216483|dbj|BAA01334|
            (D10483) ribulokinase [Escherichia coli] >gi|225431|prf||1303258A
            operon araB [Escherichia coli]
            Length = 566

Local hits (HSPs):      ____________________________________________      
                        __________________________________________________
Database sequence:     |             |            |            |          | 566
                       0           150          300          450

 Score = 2464 (867.4 bits), Expect = 6.5e-256, P = 6.5e-256
 Identities = 466/490 (95%), Positives = 466/490 (95%)

Query:     1 MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIES 60
             MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIES
Sbjct:     1 MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIES 60

Query:    61 MEAALKTVLAELSVEQRXXXXXXXXXXXXXXXXXXXXXXXXLALRPEFAENPNAMFVLWK 120
             MEAALKTVLAELSVEQR                        LALRPEFAENPNAMFVLWK
Sbjct:    61 MEAALKTVLAELSVEQRAAVVGIGVDSTGSTPAPIDADGNVLALRPEFAENPNAMFVLWK 120

Query:   121 DHTAVERSEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIEL 180
             DHTAVERSEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIEL
Sbjct:   121 DHTAVERSEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIEL 180

Query:   181 CDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFT 240
             CDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFT
Sbjct:   181 CDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFT 240

Query:   241 DTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDI 300
             DTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDI
Sbjct:   241 DTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDI 300

Query:   301 LIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWPLEQLAAQH 360
             LIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWPLEQLAAQH
Sbjct:   301 LIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWPLEQLAAQH 360

Query:   361 PELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRSPNANQRLKGVITDLNLA 420
             PELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRSPNANQRLKGVITDLNLA
Sbjct:   361 PELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRSPNANQRLKGVITDLNLA 420

Query:   421 TDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPL 480
             TDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPL
Sbjct:   421 TDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPL 480

Query:   481 QIVASDQCCA 490
             QIVASDQCCA
Sbjct:   481 QIVASDQCCA 490


 >gi|2507053|sp|P08204|KIRI_ECOLI  L-RIBULOKINASE >gi|1786249|gb|AAC73174.1|
            (AE000116) L-ribulokinase [Escherichia coli]
            Length = 566

Local hits (HSPs):      ____________________________________________      
Annotated Domains:                           _____                        
                        __________________________________________________
Database sequence:     |             |            |            |          | 566
                       0           150          300          450
__________________

Annotated Domains:
   PFAM                 FGGY: FGGY family of carbohydrate kinase 248..295
__________________


 Score = 2442 (859.6 bits), Expect = 1.4e-253, P = 1.4e-253
 Identities = 460/490 (93%), Positives = 463/490 (94%)

Query:     1 MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIES 60
             MAIAIGLDFGSDSVRALAVDCA+GEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIES
Sbjct:     1 MAIAIGLDFGSDSVRALAVDCATGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIES 60

Query:    61 MEAALKTVLAELSVEQRXXXXXXXXXXXXXXXXXXXXXXXXLALRPEFAENPNAMFVLWK 120
             MEAALKTVLAELSVEQR                        LALRPEFAENPNAMFVLWK
Sbjct:    61 MEAALKTVLAELSVEQRAAVVGIGVDSTGSTPAPIDADGNVLALRPEFAENPNAMFVLWK 120

Query:   121 DHTAVERSEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIEL 180
             DHTAVE +EEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIEL
Sbjct:   121 DHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIEL 180

Query:   181 CDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFT 240
             CDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFT
Sbjct:   181 CDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFT 240

Query:   241 DTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDI 300
             DTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDI
Sbjct:   241 DTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDI 300

Query:   301 LIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWPLEQLAAQH 360
             LIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVL WPLEQLAAQH
Sbjct:   301 LIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLGWPLEQLAAQH 360

Query:   361 PELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRSPNANQRLKGVITDLNLA 420
             PELK QINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRR+PNANQRLKGVITDLNLA
Sbjct:   361 PELKTQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRTPNANQRLKGVITDLNLA 420

Query:   421 TDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPL 480
             TDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPL
Sbjct:   421 TDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPL 480

Query:   481 QIVASDQCCA 490
             QIVASDQCCA
Sbjct:   481 QIVASDQCCA 490


 >gi|125422|sp|P06188|KIRI_SALTY  L-RIBULOKINASE >gi|79122|pir||A24984
            ribulokinase (EC 2.7.1.16) - Salmonella typhimurium >gi|153867
            (M11047) ribulokinase [Salmonella typhimurium]
            Length = 569

Local hits (HSPs):      ___________________________________________       
Annotated Domains:         _                 _____                        
                        __________________________________________________
Database sequence:     |             |            |            |          | 569
                       0           150          300          450
__________________

Annotated Domains:
   PFAM                 FGGY: FGGY family of carbohydrate kinase 249..296
   PROSITE              TYR_PHOSPHO_SITE: Tyrosine kinase phosph 36..42
__________________


 Score = 2284 (804.0 bits), Expect = 7.8e-237, P = 7.8e-237
 Identities = 425/490 (86%), Positives = 446/490 (91%)

Query:     1 MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIES 60
             MAIAIGLDFGSDSVRALAVDCA+G+EIATSVEWYPRWQ+G++CD PNNQFRHHPRDY+ES
Sbjct:     1 MAIAIGLDFGSDSVRALAVDCATGDEIATSVEWYPRWQEGRYCDGPNNQFRHHPRDYMES 60

Query:    61 MEAALKTVLAELSVEQRXXXXXXXXXXXXXXXXXXXXXXXXLALRPEFAENPNAMFVLWK 120
             MEAALK VLA+LS  QR                        LALRPEFAENPNAMFVLWK
Sbjct:    61 MEAALKAVLAQLSAAQRANVVGIGVDSTGSTPAPIDADGNVLALRPEFAENPNAMFVLWK 120

Query:   121 DHTAVERSEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIEL 180
             DHTAVE ++EITRLCH PG VDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQ+A SWIEL
Sbjct:   121 DHTAVEEADEITRLCHKPGKVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQAAVSWIEL 180

Query:   181 CDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFT 240
             CDWVPALLSGTTRPQDIRRGRCSAGHK+LWHESWGGLPPASFFDELDP +NRHL  PLF+
Sbjct:   181 CDWVPALLSGTTRPQDIRRGRCSAGHKTLWHESWGGLPPASFFDELDPCINRHLRYPLFS 240

Query:   241 DTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDI 300
             +T+TAD+PVGTLC EWAQRL LPESVVISGGAFDCHMGAVGAGAQPN LVKVIGTSTCDI
Sbjct:   241 ETFTADLPVGTLCAEWAQRLDLPESVVISGGAFDCHMGAVGAGAQPNTLVKVIGTSTCDI 300

Query:   301 LIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWPLEQLAAQH 360
             LIADKQSVG+RAVKGICGQVDGSVVP FIGLEAGQSAFGDIYAWF RVLSWPLEQLAAQH
Sbjct:   301 LIADKQSVGDRAVKGICGQVDGSVVPNFIGLEAGQSAFGDIYAWFSRVLSWPLEQLAAQH 360

Query:   361 PELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRSPNANQRLKGVITDLNLA 420
             PELK QINASQKQLLPALT+AWAKNPSLDHLPVVLDWFNGRR+PNANQRLKGVITDLNLA
Sbjct:   361 PELKPQINASQKQLLPALTDAWAKNPSLDHLPVVLDWFNGRRTPNANQRLKGVITDLNLA 420

Query:   421 TDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPL 480
             TDAP LFGGL+A+TAFGARAI ECFTDQGIAVNNVMALGGIARKNQVIMQ CCDVLNRPL
Sbjct:   421 TDAPALFGGLVASTAFGARAIQECFTDQGIAVNNVMALGGIARKNQVIMQVCCDVLNRPL 480

Query:   481 QIVASDQCCA 490
             QIVASDQCCA
Sbjct:   481 QIVASDQCCA 490


 >gi|5616308|gb|AAD45717.1|AF160811_5  (AF160811) L-ribulokinase [Bacillus
            stearothermophilus]
            Length = 564

Local hits (HSPs):      __________________________________________        
                        __________________________________________________
Database sequence:     |             |            |            |          | 564
                       0           150          300          450

 Score = 458 (161.2 bits), Expect = 2.4e-43, P = 2.4e-43
 Identities = 119/341 (34%), Positives = 167/341 (48%)

Query:     5 IGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFR-----HHPRDYIE 59
             IG+D+G++S RA+ VD   G EIA  V  YP     +     N Q        HP DYIE
Sbjct:     7 IGIDYGTESGRAVLVDL-EGNEIADHVTPYPHGVIDEVLPESNVQLEPDWALQHPADYIE 65

Query:    60 SMEAALKTVLAELSVEQRXXXXXXXXXXXXXXXXXXXXXXXXLALRPEFAENPNAMFVLW 119
              +  A+ TVL +  V                           L L+PEF   P++   LW
Sbjct:    66 VLATAVPTVLQKSGVNP-ADVIGVGIDFTSCTMLPVDASGEPLCLKPEFRNRPHSWVKLW 124

Query:   120 KDHTAVERSEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIE 179
             K H A + +  +  +    G     RY GG  SSEW  AKI  +  +D  + +    ++E
Sbjct:   125 KHHAAQDEANLLNEIAAKRGEAFLPRY-GGKISSEWMIAKIWQILNEDPEIYEQTDLFLE 183

Query:   180 LCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLF 239
               DWV   ++G     +I R  C+AG+KS+WH+   G P   FF  LDP L  HL     
Sbjct:   184 GTDWVIFKMTG-----NIVRNSCAAGYKSIWHKQ-DGYPSKEFFRALDPRLE-HLTE--- 233

Query:   240 TDTWTADIPVGT----LCPEWAQRLGLPESVVISGGAFDCHMGAVGAGA-QPNALVKVIG 294
             T      +P+GT    L  E A  +GL     ++ G  D H    G G  +P  LV  +G
Sbjct:   234 TKLRGPIVPLGTRAGVLTNEMAAMMGLLPGTAVAVGNVDAHAAVPGVGVVEPGKLVMAMG 293

Query:   295 TSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWF 345
             TS C +L+  +    E+ V+G+CG V+  ++PG+ G EAGQSA GDI+AW+
Sbjct:   294 TSICHMLLGTE----EKYVEGMCGVVEDGIIPGYFGYEAGQSAVGDIFAWY 340

 Score = 423 (148.9 bits), Expect = 1.2e-39, P = 1.2e-39
 Identities = 107/292 (36%), Positives = 157/292 (53%)

Query:   196 DIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFTDTWTADIPVGT---- 251
             +I R  C+AG+KS+WH+   G P   FF  LDP L  HL     T      +P+GT    
Sbjct:   195 NIVRNSCAAGYKSIWHKQ-DGYPSKEFFRALDPRLE-HLTE---TKLRGPIVPLGTRAGV 249

Query:   252 LCPEWAQRLGLPESVVISGGAFDCHMGAVGAGA-QPNALVKVIGTSTCDILIADKQSVGE 310
             L  E A  +GL     ++ G  D H    G G  +P  LV  +GTS C +L+  +    E
Sbjct:   250 LTNEMAAMMGLLPGTAVAVGNVDAHAAVPGVGVVEPGKLVMAMGTSICHMLLGTE----E 305

Query:   311 RAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWPLEQ-LAAQHPELKAQINA 369
             + V+G+CG V+  ++PG+ G EAGQSA GDI+AW+       +EQ + A   E   +   
Sbjct:   306 KYVEGMCGVVEDGIIPGYFGYEAGQSAVGDIFAWY-------VEQGVPAYVKEAAEKEGI 358

Query:   370 SQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRSPNANQRLKGVITDLNLATDAPLLFGG 429
             S  + L     A+   P    L + LDW+NG RS   +  L G+I    L T    ++  
Sbjct:   359 SVHEWLEKRAAAY--RPGETGL-LALDWWNGNRSVLVDTDLTGLIVGYTLLTKPEEIYRA 415

Query:   430 LIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQ 487
             L+ ATAFG R I++ F + G+ V+ + A GG+ +K++++MQ   DV NR ++I AS Q
Sbjct:   416 LLEATAFGTRKIIDAFVENGVKVDELYACGGLPQKDKLLMQIYADVTNREIKIAASKQ 473


 >gi|2498150|sp|P94524|ARAB_BACSU  L-RIBULOKINASE >gi|1770015|emb|CAA99588.1|
            (Z75208) L-ribulokinase [Bacillus subtilis]
            >gi|2635344|emb|CAB14839| (Z99118) L-ribulokinase [Bacillus
            subtilis]
            Length = 560

Local hits (HSPs):      ___________________________________________       
Annotated Domains:                           ______________________  _    
                        __________________________________________________
Database sequence:     |             |            |             |         | 560
                       0           150          300           450
__________________

Annotated Domains:
   PFAM                 FGGY: FGGY family of carbohydrate kinase 243..479
   PROSITE              TYR_PHOSPHO_SITE: Tyrosine kinase phosph 413..421
   PROSITE              TYR_PHOSPHO_SITE: Tyrosine kinase phosph 505..511
__________________


 Score = 442 (155.6 bits), Expect = 1.2e-41, P = 1.2e-41
 Identities = 107/372 (28%), Positives = 179/372 (48%)

Query:     1 MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRW-------QKGQFCDAPNNQFRHH 53
             MA  IG+DFG+ S RA+ V   +GEE+A +V+ Y          + GQ    P +    H
Sbjct:     1 MAYTIGVDFGTLSGRAVLVHVQTGEELAAAVKEYRHAVIDTVLPKTGQ--KLPRDWALQH 58

Query:    54 PRDYIESMEAALKTVLAELSVEQRXXXXXXXXXXXXXXXXXXXXXXXXLALRPEFAENPN 113
             P DY+E +E  + ++L +  V+ +                        L + PE+ E P+
Sbjct:    59 PADYLEVLETTIPSLLEQTGVDPKDIIGIGIDFTACTILPIDSSGQP-LCMLPEYEEEPH 117

Query:   114 AMFVLWKDHTAVERSEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQS 173
             +   LWK H A + ++ + ++    G     RY GG  SSEW   K++ +  +   + ++
Sbjct:   118 SYVKLWKHHAAQKHADRLNQIAEEEGEAFLQRY-GGKISSEWMIPKVMQIAEEAPHIYEA 176

Query:   174 AASWIELCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRH 233
             A   IE  DW+   L G+     ++R  C+AG+K++W E   G P   FF++L+P +   
Sbjct:   177 ADRIIEAADWIVYQLCGS-----LKRSNCTAGYKAMWSEK-AGYPSDDFFEKLNPSMKTI 230

Query:   234 LPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAG-AQPNALVKV 292
                 L     +     G+L  + A+  GL     ++    D H+     G  +P  ++ +
Sbjct:   231 TKDKLSGSIHSVGEKAGSLTEKMAKLTGLLPGTAVAVANVDAHVSVPAVGITEPGKMLMI 290

Query:   293 IGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWP 352
             +GTSTC +L+ ++  +    V G+CG VD  ++PG+ G EAGQS  GD + WF +    P
Sbjct:   291 MGTSTCHVLLGEEVHI----VPGMCGVVDNGILPGYAGYEAGQSCVGDHFDWFVKTCVPP 346

Query:   353 LEQLAAQHPELKAQINASQK 372
               Q  A+   +      S+K
Sbjct:   347 AYQEEAKEKNIGVHELLSEK 366

 Score = 400 (140.8 bits), Expect = 3.4e-37, P = 3.4e-37
 Identities = 94/294 (31%), Positives = 147/294 (50%)

Query:   197 IRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFTDTWTADIPVGTLCPEW 256
             ++R  C+AG+K++W E   G P   FF++L+P +       L     +     G+L  + 
Sbjct:   195 LKRSNCTAGYKAMWSEK-AGYPSDDFFEKLNPSMKTITKDKLSGSIHSVGEKAGSLTEKM 253

Query:   257 AQRLGLPESVVISGGAFDCHMGAVGAG-AQPNALVKVIGTSTCDILIADKQSVGERAVKG 315
             A+  GL     ++    D H+     G  +P  ++ ++GTSTC +L+ ++  +    V G
Sbjct:   254 AKLTGLLPGTAVAVANVDAHVSVPAVGITEPGKMLMIMGTSTCHVLLGEEVHI----VPG 309

Query:   316 ICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWPLEQLAAQHPELKAQINASQKQLL 375
             +CG VD  ++PG+ G EAGQS  GD + WF +    P     A   E K + N    +LL
Sbjct:   310 MCGVVDNGILPGYAGYEAGQSCVGDHFDWFVKTCVPP-----AYQEEAKEK-NIGVHELL 363

Query:   376 PALTEAWAKNPSLDHLPVVLDWFNGRRSPNANQRLKGVITDLNLATDAPLLFGGLIAATA 435
                    A  P    L + LDW+NG RS   +  L G++  + L T    ++  L+ ATA
Sbjct:   364 SEKANHQA--PGESGL-LALDWWNGNRSTLVDADLTGMLLGMTLLTKPEEIYRALVEATA 420

Query:   436 FGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCA 490
             +G R I+E F + G+ +  + A GGIA KN  +MQ   DV N  ++I  S Q  A
Sbjct:   421 YGTRMIIETFKESGVPIEELFAAGGIAEKNPFVMQIYADVTNMDIKISGSPQAPA 475


 >gi|1924931|emb|CAA61586|  (X89408) L-ribulokinase [Bacillus subtilis]
            Length = 560

Local hits (HSPs):      ___________________________________________       
                        __________________________________________________
Database sequence:     |             |            |             |         | 560
                       0           150          300           450

 Score = 431 (151.7 bits), Expect = 1.8e-40, P = 1.8e-40
 Identities = 106/372 (28%), Positives = 178/372 (47%)

Query:     1 MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRW-------QKGQFCDAPNNQFRHH 53
             MA  IG+DFG+ S RA+ V   +GEE+A +V+ Y          + GQ    P +    H
Sbjct:     1 MAYTIGVDFGTLSGRAVLVHVQTGEELAAAVKEYRHAVIDTVLPKTGQ--KLPRDWALQH 58

Query:    54 PRDYIESMEAALKTVLAELSVEQRXXXXXXXXXXXXXXXXXXXXXXXXLALRPEFAENPN 113
               DY+E +E  + ++L +  V+ +                        L + PE+ E P+
Sbjct:    59 FADYLEVLETTIPSLLEQTGVDPKDIIGIGIDFTACTILPIDSSGQP-LCMLPEYEEEPH 117

Query:   114 AMFVLWKDHTAVERSEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQS 173
             +   LWK H A + ++ + ++    G     RY GG  SSEW   K++ +  +   + ++
Sbjct:   118 SYVKLWKHHAAQKHADRLNQIAEEEGEAFLQRY-GGKISSEWMIPKVMQIAEEAPHIYEA 176

Query:   174 AASWIELCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRH 233
             A   IE  DW+   L G+     ++R  C+AG+K++W E   G P   FF++L+P +   
Sbjct:   177 ADRIIEAADWIVYQLCGS-----LKRSNCTAGYKAMWSEK-AGYPSDDFFEKLNPSMKTI 230

Query:   234 LPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAG-AQPNALVKV 292
                 L     +     G+L  + A+  GL     ++    D H+     G  +P  ++ +
Sbjct:   231 TKDKLSGSIHSVGEKAGSLTEKMAKLTGLLPGTAVAVANVDAHVSVPAVGITEPGKMLMI 290

Query:   293 IGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWP 352
             +GTSTC +L+ ++  +    V G+CG VD  ++PG+ G EAGQS  GD + WF +    P
Sbjct:   291 MGTSTCHVLLGEEVHI----VPGMCGVVDNGILPGYAGYEAGQSCVGDHFDWFVKTCVPP 346

Query:   353 LEQLAAQHPELKAQINASQK 372
               Q  A+   +      S+K
Sbjct:   347 AYQEEAKEKNIGVHELLSEK 366

 Score = 400 (140.8 bits), Expect = 3.4e-37, P = 3.4e-37
 Identities = 94/294 (31%), Positives = 147/294 (50%)

Query:   197 IRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFTDTWTADIPVGTLCPEW 256
             ++R  C+AG+K++W E   G P   FF++L+P +       L     +     G+L  + 
Sbjct:   195 LKRSNCTAGYKAMWSEK-AGYPSDDFFEKLNPSMKTITKDKLSGSIHSVGEKAGSLTEKM 253

Query:   257 AQRLGLPESVVISGGAFDCHMGAVGAG-AQPNALVKVIGTSTCDILIADKQSVGERAVKG 315
             A+  GL     ++    D H+     G  +P  ++ ++GTSTC +L+ ++  +    V G
Sbjct:   254 AKLTGLLPGTAVAVANVDAHVSVPAVGITEPGKMLMIMGTSTCHVLLGEEVHI----VPG 309

Query:   316 ICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWPLEQLAAQHPELKAQINASQKQLL 375
             +CG VD  ++PG+ G EAGQS  GD + WF +    P     A   E K + N    +LL
Sbjct:   310 MCGVVDNGILPGYAGYEAGQSCVGDHFDWFVKTCVPP-----AYQEEAKEK-NIGVHELL 363

Query:   376 PALTEAWAKNPSLDHLPVVLDWFNGRRSPNANQRLKGVITDLNLATDAPLLFGGLIAATA 435
                    A  P    L + LDW+NG RS   +  L G++  + L T    ++  L+ ATA
Sbjct:   364 SEKANHQA--PGESGL-LALDWWNGNRSTLVDADLTGMLLGMTLLTKPEEIYRALVEATA 420

Query:   436 FGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCA 490
             +G R I+E F + G+ +  + A GGIA KN  +MQ   DV N  ++I  S Q  A
Sbjct:   421 YGTRMIIETFKESGVPIEELFAAGGIAEKNPFVMQIYADVTNMDIKISGSPQAPA 475


 >gi|2905643  (AF045244) ribitol kinase [Klebsiella pneumoniae]
            Length = 535

Local hits (HSPs):      ___________________________________________       
                        __________________________________________________
Database sequence:     |             |             |             |        | 535
                       0           150           300           450

 Score = 210 (73.9 bits), Expect = 6.3e-14, P = 6.3e-14
 Identities = 105/371 (28%), Positives = 169/371 (45%)

Query:   102 LALRPEFAENPNAMFVLWKDHTAVERSEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKIL 161
             LA+ P  +++ +   ++W DH A  ++E+I    H P      RY+GG  S E    KIL
Sbjct:    97 LAVGP--SDDADRNIIVWMDHRATGQAEKINATGH-P----VLRYVGGKISPEMQTPKIL 149

Query:   162 HVTRQDSAVAQSAASWIELCDWVPALLSGTTRPQDIRRGRCSAGHK--SLWHES-WGGLP 218
              +      + Q A  + +L D++    +G     D  R  C+   K   L HE  W    
Sbjct:   150 WLKENRPHIYQLARHFFDLADYLTWRSTG-----DEARSVCTVTCKWTYLAHEQRWD--- 201

Query:   219 PASFFDE--LDPILNRHLP--SPLFTDTWTADIPVGT-LCPEWAQRLGLPESVVISGGAF 273
              A +F +  L+ +++           D  T   P G  LC   A+ +GLP    ++ G  
Sbjct:   202 -AGYFRQIGLEELVDEDFVRIGQRIVDPGT---PCGEGLCATAAEEMGLPIGTPVAVGMI 257

Query:   274 DCHMGAVGAGAQPNALVK----VIGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFI 329
             D H G +G     N  V     V GTS+C  +   +++V    V G+ G    ++VPG+ 
Sbjct:   258 DAHAGGIGTVGVLNGAVNNMAYVFGTSSCT-MTTTQEAV---FVPGVWGPYYSAMVPGYW 313

Query:   330 GLEAGQSAFGDIYAWFGRVLSW-PLEQLAAQHPE---LKAQINASQKQLLPALTEAWAKN 385
               E GQSA G   A   ++LS+ P    A +H +   +   +  + + L    + + A  
Sbjct:   314 LSEGGQSAAG---AAIDQLLSFHPAAAEAREHAKAAGVPLPVWLADRVLTQVASPSEAVT 370

Query:   386 PSLDHLPVVLDWFNGRRSPNANQRLKGVITDLNLATD----APLLFGGLIAATAFGARAI 441
              +   L VV + F G R+P A+   K +I  L +  D      L   GL     +G R I
Sbjct:   371 LAAG-LHVVPE-FLGNRAPLADPHAKALIAGLGMERDLDNLTALYVAGL-CGIGYGLRQI 427

Query:   442 MECFTDQGIAVNNVMALGGIARK---NQVIMQAC 472
             ++     GI   N++  GG  +     Q++  AC
Sbjct:   428 IDAQRACGIESENIVISGGAGQHPLVRQLLADAC 461

 Score = 93 (32.7 bits), Expect = 0.48, P = 0.38
 Identities = 43/180 (23%), Positives = 72/180 (40%)

Query:     5 IGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIESMEAA 64
             IG+D GS SVRA  V    GE +A +      ++         N+     R+  +++   
Sbjct:     9 IGVDVGSGSVRA-GVFNLRGELLAHATREITLFRSA------GNKVEQSSREIWQAVCYC 61

Query:    65 LKTVLAELSVEQRXXXXXXXXXXXXXXXXXXXXXXXXLALRPEFAENPNAMFVLWKDHTA 124
             +KT +A   V                           LA+ P  +++ +   ++W DH A
Sbjct:    62 IKTAVANAGVSP--SSIAGIGFDATCSLVVIGDNDAPLAVGP--SDDADRNIIVWMDHRA 117

Query:   125 VERSEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIELCDWV 184
               ++E+I    H P      RY+GG  S E    KIL +      + Q A  + +L D++
Sbjct:   118 TGQAEKINATGH-P----VLRYVGGKISPEMQTPKILWLKENRPHIYQLARHFFDLADYL 172


 >gi|1077569|pir||S52675  probable membrane protein YDR109c - yeast
            (Saccharomyces cerevisiae) >gi|747884|emb|CAA88663| (Z48758)
            unknown [Saccharomyces cerevisiae]
            Length = 715

Local hits (HSPs):        _____________   ____________________            
Annotated Domains:                   __       _            ____        __ 
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 715
                       0        150       300        450       600
__________________

Annotated Domains:
   Entrez               domain: transmembrane                    515..531
   Entrez               domain: transmembrane                    535..551
   PROSITE              TYR_PHOSPHO_SITE: Tyrosine kinase phosph 198..205
   PROSITE              TYR_PHOSPHO_SITE: Tyrosine kinase phosph 320..328
   PROSITE              TYR_PHOSPHO_SITE: Tyrosine kinase phosph 682..689
__________________


 Score = 101 (35.6 bits), Expect = 9.4e-09, Sum P(3) = 9.4e-09
 Identities = 57/194 (29%), Positives = 84/194 (43%)

Query:   289 LVKVIGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRV 348
             L  V GTSTC IL++ K  +    V G+ G     +  GF   E GQS  G        V
Sbjct:   339 LAAVAGTSTCHILLS-KNPI---FVHGVWGPYRDVLARGFWAAEGGQSCTG--------V 386

Query:   349 LSWPLEQLAAQHP---ELKAQIN---ASQKQLLPALTEAWAKNPSL-------DHLPVVL 395
             L   L+ L   HP   EL    N    S+ + L  + E   +   +        HL    
Sbjct:   387 L---LDHLITTHPAFTELSHMANLAGVSKFEYLNKILETLVEKRKVRSVISLAKHLFFYG 443

Query:   396 DWFNGRRSPNANQRLKGVITDLNLATDAPLLFGGLIAATAF---GARAIMECFTDQGIAV 452
             D ++G RSP A+  ++  I   ++      L    ++A  F     R I+E     G  +
Sbjct:   444 D-YHGNRSPIADPNMRACIIGQSMDNSIEDLAVMYLSACEFISQQTRQIIEVMLKSGHEI 502

Query:   453 NNVMALGGIARKNQVIMQACCDVLNRPLQI 482
             N +   GG  R N ++M+   D    P+ I
Sbjct:   503 NAIFMSGGQCR-NSLLMRLLADCTGLPIVI 531

 Score = 87 (30.6 bits), Expect = 9.4e-09, Sum P(3) = 9.4e-09
 Identities = 41/186 (22%), Positives = 76/186 (40%)

Query:     5 IGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIESMEAA 64
             +G+D G+ S RA  +D  SG  ++ + +   R Q        +N      R+   ++   
Sbjct:    41 VGVDVGTGSARACVID-QSGNMLSLAEKPIKREQ------LISNFITQSSREIWNAVCYC 93

Query:    65 LKTVLAELSVEQRXXXXXXXXXXXXXXXXXXXXXXXXLALRPEFAENPNAMFVLWKDHTA 124
             ++TV+ E  V+                          +A+ P+F  N   + +LW DH A
Sbjct:    94 VRTVVEESGVDPERVRGIGFDATCSLVVVSATNFEE-IAVGPDFTNNDQNI-ILWMDHRA 151

Query:   125 VERSEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIELCDWV 184
             ++ +EEI    ++ G+    +Y+GG  S E    KI  +     A       + +L D++
Sbjct:   152 MKETEEI----NSSGD-KCLKYVGGQMSVEMEIPKIKWLKNNLEAGIFQDCKFFDLPDYL 206

Query:   185 PALLSG 190
                 +G
Sbjct:   207 TFKATG 212

 Score = 68 (23.9 bits), Expect = 9.4e-09, Sum P(3) = 9.4e-09
 Identities = 19/49 (38%), Positives = 26/49 (53%)

Query:   244 TADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGA-GAQPNALVK 291
             TA   +  L  + A +LGL E  V+S G  D + G VG   A+P + VK
Sbjct:   272 TAGECISPLDKKAACQLGLTEHCVVSSGIIDAYAGWVGTVAAKPESAVK 320


 >gi|2293419  (AF007800) xylulose kinase [Pseudomonas fluorescens]
            Length = 493

Local hits (HSPs):      ________  _____________________   __________      
                        __________________________________________________
Database sequence:     |               |              |              |    | 493
                       0             150            300            450

 Score = 108 (38.0 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
 Identities = 52/205 (25%), Positives = 86/205 (41%)

Query:   118 LWKD-HTAVERSEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAAS 176
             LW D  TA+E    +  L    G+++    +G   +  +  +K+L    Q   V    A 
Sbjct:   103 LWCDTETALENERLLAYLGGEGGSLER---LGVAIAPGYTVSKLLWTREQHPDVFARIAH 159

Query:   177 WIELCDWVPALLSGTTRPQDIRRGRCSA-GHKSLWHESWGGLPPASFFDELDPILNRHLP 235
              +   D++   L+G    +    G  S  G+ ++   +W      +    +DP       
Sbjct:   160 VLLPHDYLNYWLTGRAVAE---YGDASGTGYFNVRTRAWD----MALLKHIDPSGRLEAA 212

Query:   236 SPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAG-AQPNALVKVIG 294
              P   +   AD  VGT+ P  A+RLG+  +  +S G  D  MGA+G G   P  +   +G
Sbjct:   213 LPTLIE---ADQSVGTILPAIAERLGINPNARVSSGGGDNMMGAIGTGNIAPGVITMSLG 269

Query:   295 TSTCDILIADKQSVGERA-VKGICGQVDG 322
             +S      AD+ +V  +A V   C    G
Sbjct:   270 SSGTVYAFADQPNVSPQASVATFCSSSGG 298

 Score = 75 (26.4 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
 Identities = 27/94 (28%), Positives = 47/94 (50%)

Query:   394 VLDWFNGRRSP---NANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGI 450
             +L + NG R P   +A   L G +T  NL T A L    ++  T FG R  ++     G+
Sbjct:   342 MLPFLNGERVPALPHATGSLHG-LTMTNL-TRANLC-RAVVEGTTFGLRYGLDLLRHTGL 398

Query:   451 AVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQ 487
                ++  +GG   K+ V  Q   D++N   +++ ++Q
Sbjct:   399 QSQSIRLIGG-GSKSPVWRQMVADIMNT--EVICTEQ 432

 Score = 53 (18.7 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
 Identities = 12/71 (16%), Positives = 31/71 (43%)

Query:     5 IGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIESMEAA 64
             +G+D G+   +A+ +D +SG+ +      +            N +   H ++++++   A
Sbjct:     8 LGIDCGTQGTKAIVLDASSGKVLGLGAAAHT------LISGANGRREQHTQEWLDAFTEA 61

Query:    65 LKTVLAELSVE 75
                 L +  V+
Sbjct:    62 THRALQQAGVD 72


 >gi|2895855  (AF045552) xylulokinase [Lactobacillus brevis]
            Length = 502

Local hits (HSPs):      ______   ______      ___________  _________       
                        __________________________________________________
Database sequence:     |              |              |              |     | 502
                       0            150            300            450

 Score = 103 (36.3 bits), Expect = 4.2e-06, Sum P(4) = 4.2e-06
 Identities = 34/105 (32%), Positives = 48/105 (45%)

Query:   250 GTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGA-QPNALVKVIGTSTCDILIADKQSV 308
             GT+ P +A+  GL     + GGA D   GAVGAG   PN ++  IGTS   +   D   V
Sbjct:   216 GTVTPAYAEFSGLTTDTKVFGGAADNAAGAVGAGILHPNMVLSSIGTSGVVLKYEDNADV 275

Query:   309 GERAVKGICGQVDGSVVPG-FIGLEAGQSAFGDIYAWFGRVLSWPLE 354
                 V     Q +   +P  F  +    +A G  + WF +  + P E
Sbjct:   276 NYHGVL----QFEDHAIPDKFYSMGVTLAA-GYSFTWFKKTFA-PAE 316

 Score = 72 (25.3 bits), Expect = 4.2e-06, Sum P(4) = 4.2e-06
 Identities = 19/88 (21%), Positives = 43/88 (48%)

Query:   400 GRRSPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALG 459
             G R+P A+  ++G  T ++           ++    F  R + + + + G   + V+++G
Sbjct:   343 GERAPYADADIRGSFTGVDGTHQRYDFVRAVLEGIIFSFRDLFDIYEENGGDFDTVVSIG 402

Query:   460 GIARKNQVIMQACCDVLNRPLQIVASDQ 487
             G A K+ + +Q   D+ NR +  + ++Q
Sbjct:   403 GGA-KSPLWLQIQADIFNRKVVSLTNEQ 429

 Score = 46 (16.2 bits), Expect = 4.2e-06, Sum P(4) = 4.2e-06
 Identities = 17/61 (27%), Positives = 29/61 (47%)

Query:     5 IGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIESMEAA 64
             +G+D G+ +V+  A+D  SG+ +A     Y   QK       N Q   +P D++     A
Sbjct:     6 LGVDLGTSAVKVSALD-HSGQIVAQESFDYDLIQKQP---GYNEQ---NPEDWVSGTTVA 58

Query:    65 L 65
             +
Sbjct:    59 I 59

 Score = 38 (13.4 bits), Expect = 4.2e-06, Sum P(4) = 4.2e-06
 Identities = 10/44 (22%), Positives = 21/44 (47%)

Query:   117 VLWKDHTAVERSEEI-TRLCHAPGNVDYSRYIGGIYSSEWFWAK 159
             +LW D  +  + EEI  +L     ++  ++ + G   ++  W K
Sbjct:    99 ILWNDTRSTPQREEIEAKLGDEFVHITRNQPLEGFTLTKLLWVK 142


 >gi|2581798  (AF001974) xylulose kinase; XylB [Thermoanaerobacter ethanolicus]
            Length = 500

Local hits (HSPs):      ____    _______      _______    _______________   
                        __________________________________________________
Database sequence:     |              |              |              |     | 500
                       0            150            300            450

 Score = 88 (31.0 bits), Expect = 9.6e-06, Sum P(4) = 9.6e-06
 Identities = 28/106 (26%), Positives = 47/106 (44%)

Query:   378 LTEAWAKNPSLDHLPVVLDWFNGRRSPNANQRLKGVITDLNLATDAPLLFGGLIAATAFG 437
             L EA    P+   L + L +  G R+P ++   +G    LN+  +   +   ++   AFG
Sbjct:   324 LEEAGKVTPASGGL-IFLPYLMGERTPYSDPYARGSFIGLNMTHNRGHITRAILEGVAFG 382

Query:   438 ARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPLQIV 483
              R  +E   +  I VN V   GG A K+ +  Q   D+    + +V
Sbjct:   383 LRDSLEIIKELNIPVNEVRVSGGGA-KSVLWRQVLADIFGVRVDMV 427

 Score = 77 (27.1 bits), Expect = 9.6e-06, Sum P(4) = 9.6e-06
 Identities = 21/62 (33%), Positives = 29/62 (46%)

Query:   250 GTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKV-IGTSTCDILIADKQSV 308
             G +  + A   GL E  ++ GG  D   GAVG G   + +V + +GTS       DK  V
Sbjct:   215 GYVTKDVADLTGLKEGTIVVGGGGDQASGAVGTGTVKSGIVSIALGTSGVVFASQDKYVV 274

Query:   309 GE 310
              E
Sbjct:   275 DE 276

 Score = 51 (18.0 bits), Expect = 0.040, Sum P(4) = 0.040
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query:   412 GVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGIAVNN 454
             GV  D+  AT+ P     ++AA  +G    +E  T + I +N+
Sbjct:   421 GVRVDMVNATEGPAFGAAIMAAVGYGIFKDVEEATSELIKIND 463

 Score = 47 (16.5 bits), Expect = 9.6e-06, Sum P(4) = 9.6e-06
 Identities = 9/31 (29%), Positives = 20/31 (64%)

Query:     5 IGLDFGSDSVRALAVDCASGEEIATSVEWYP 35
             +G+D G+ +V+ + V+  +G  I ++ + YP
Sbjct:     4 LGIDLGTSAVKIILVE-ENGNVIGSTSKEYP 33

 Score = 45 (15.8 bits), Expect = 9.6e-06, Sum P(4) = 9.6e-06
 Identities = 16/56 (28%), Positives = 25/56 (44%)

Query:   110 ENPNAMF--VLWKDHTAVERSEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTR 165
             EN N +   +LW D    E  + IT+     G    ++Y G    + +   KIL V +
Sbjct:    88 ENNNVLLPAILWNDQRTQEECDYITQTL---GKERLTKYTGNKALTGFTAPKILWVRK 142


 >gi|2905647  (AF045245) D-arabinitol kinase [Klebsiella pneumoniae]
            Length = 487

Local hits (HSPs):      _____                ______________________       
                        __________________________________________________
Database sequence:     |               |              |               |   | 487
                       0             150            300             450

 Score = 99 (34.8 bits), Expect = 2.9e-05, Sum P(3) = 2.9e-05
 Identities = 37/129 (28%), Positives = 56/129 (43%)

Query:   251 TLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGA-QPNALVKVIGTSTCDILIADK-QSV 308
             TL P+ A R GL  SV+++GG  D  + A+G GA  P      +GTS    ++ D  +  
Sbjct:   213 TLDPQVAARWGLNASVMVAGGGGDNAVSAIGVGAVSPGDAFISLGTSGVLFVVTDAYRPA 272

Query:   309 GERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWPLEQLAAQHPELKAQIN 368
              + AV   C      V+P      +   +      WF R+       L A+  EL  +  
Sbjct:   273 PQSAVHAFC-----HVLPNLWHQMSVMLSAASCLQWFCRLTGTTEVALLAEIAELSEEDK 327

Query:   369 ASQKQLLPALT 379
             A+    LP L+
Sbjct:   328 ANAPFFLPYLS 338

 Score = 68 (23.9 bits), Expect = 2.9e-05, Sum P(3) = 2.9e-05
 Identities = 19/89 (21%), Positives = 39/89 (43%)

Query:   392 PVVLDWFNGRRSPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGIA 451
             P  L + +G R+P+ +   +G+   +  A+    L   ++   +FG    ++   + G  
Sbjct:   331 PFFLPYLSGERTPHNDPDARGIFWGMTHASLRAQLGYAVLEGVSFGINDGLQALKESGTP 390

Query:   452 VNNVMALGGIARKNQVIMQACCDVLNRPL 480
             +     +GG AR +    Q   D+L  P+
Sbjct:   391 IAQCSLVGGGAR-SPFWAQLLADILAMPV 418

 Score = 48 (16.9 bits), Expect = 2.9e-05, Sum P(3) = 2.9e-05
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query:     5 IGLDFGSDSVRALAVDCASGEEIAT-----SVEW-YPRWQK 39
             +G+D G+  V+AL +D  + E IA+     S++  +P W +
Sbjct:     3 LGIDLGTSEVKALVID-ENHEVIASHSAPLSIQRPHPHWSE 42


 >gi|2828496|sp|P39211|XYLB_BACSU  XYLULOSE KINASE (XYLULOKINASE) >gi|1750125
            (U66480) xylulose kinase [Bacillus subtilis]
            >gi|2634145|emb|CAB13645| (Z99113) xylulose kinase [Bacillus
            subtilis]
            Length = 499

Local hits (HSPs):      _______              ____________ ________        
Annotated Domains:      ___   ______________________________________      
                        __________________________________________________
Database sequence:     |              |              |              |     | 499
                       0            150            300            450
__________________

Annotated Domains:
   PFAM                 FGGY: FGGY family of carbohydrate kinase 75..435
   BLOCKS               BL00933A: FGGY family of carbohydrate ki 3..26
   BLOCKS               BL00933B: FGGY family of carbohydrate ki 95..105
   BLOCKS               BL00933C: FGGY family of carbohydrate ki 124..143
   BLOCKS               BL00933D: FGGY family of carbohydrate ki 171..207
   BLOCKS               BL00933E: FGGY family of carbohydrate ki 401..416
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  248..255
   PROSITE              FGGY_KINASES_1: FGGY family of carbohydr 131..143
   PROSITE              FGGY_KINASES_2: FGGY family of carbohydr 354..374
   PROSITE              TYR_PHOSPHO_SITE: Tyrosine kinase phosph 70..77
__________________


 Score = 87 (30.6 bits), Expect = 4.1e-05, Sum P(3) = 4.1e-05
 Identities = 20/78 (25%), Positives = 40/78 (51%)

Query:   400 GRRSPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALG 459
             G R+P+A+  ++G +  ++ A +       ++    F     +E F + G +V+ V+++G
Sbjct:   342 GERTPHADSSIRGSLIGMDGAHNRKHFLRAIMEGITFSLHESIELFREAGKSVHTVVSIG 401

Query:   460 GIARKNQVIMQACCDVLN 477
             G A KN   +Q   D+ N
Sbjct:   402 GGA-KNDTWLQMQADIFN 418

 Score = 73 (25.7 bits), Expect = 4.1e-05, Sum P(3) = 4.1e-05
 Identities = 36/102 (35%), Positives = 47/102 (46%)

Query:   249 VGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKV-IGTSTCDILIADKQS 307
             VG+L P  A + GL E   +  G  D   GA+GAG   +      IGTS   IL  +++ 
Sbjct:   214 VGSLLPHVAAKTGLLEKTKVYAGGADNACGAIGAGILSSGKTLCSIGTSGV-ILSYEEEK 272

Query:   308 VGERAVKGIC-----GQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLS 350
               ER  KG       G+ D     G + L AG S   D   WF R  +
Sbjct:   273 --ERDFKGKVHFFNHGKKDSFYTMG-VTLAAGYSL--D---WFKRTFA 312

 Score = 55 (19.4 bits), Expect = 4.1e-05, Sum P(3) = 4.1e-05
 Identities = 18/77 (23%), Positives = 38/77 (49%)

Query:     1 MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIES 60
             M   IG+D G+ +V+ + V+  +G+  A + + YP  Q+       N      P D+++ 
Sbjct:     1 MKYVIGIDLGTSAVKTILVN-QNGKVCAETSKRYPLIQEKAGYSEQN------PEDWVQQ 53

Query:    61 MEAALKTVLAELSVEQR 77
                AL  +++  +V+ +
Sbjct:    54 TIEALAELVSISNVQAK 70

 Score = 42 (14.8 bits), Expect = 1.3, Sum P(3) = 0.71
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query:   395 LDWFNGRRSPNAN--QRLKGV 413
             LDWF    +PN +  Q L+GV
Sbjct:   304 LDWFKRTFAPNESFEQLLQGV 324


 >gi|1175037|sp|P44401|XYLB_HAEIN  XYLULOSE KINASE (XYLULOKINASE)
            Length = 493

Local hits (HSPs):      _______             ________   ______________     
Annotated Domains:      ___ __ ______________________________________     
                        __________________________________________________
Database sequence:     |               |              |              |    | 493
                       0             150            300            450
__________________

Annotated Domains:
   PFAM                 FGGY: FGGY family of carbohydrate kinase 78..440
   BLOCKS               BL00933A: FGGY family of carbohydrate ki 1..24
   BLOCKS               BL00933B: FGGY family of carbohydrate ki 44..54
   BLOCKS               BL00933C: FGGY family of carbohydrate ki 129..148
   BLOCKS               BL00933D: FGGY family of carbohydrate ki 176..212
   BLOCKS               BL00933E: FGGY family of carbohydrate ki 406..421
   PROSITE              FGGY_KINASES_1: FGGY family of carbohydr 136..148
   PROSITE              FGGY_KINASES_2: FGGY family of carbohydr 358..379
__________________


 Score = 81 (28.5 bits), Expect = 0.00017, Sum P(3) = 0.00017
 Identities = 25/74 (33%), Positives = 36/74 (48%)

Query:   223 FDELDPILNRHLPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGA 282
             F  L P LN     P      +A+  +G + PE A   G  E+V++S G  D  MGA+G 
Sbjct:   199 FKYLAPELNMDEVLPKLL---SAEQKIGVIKPEIATLFGFNENVIVSTGGGDNMMGAIGT 255

Query:   283 GAQPNALVKV-IGTS 296
             G     +  + +GTS
Sbjct:   256 GNIREGIATMSLGTS 270

 Score = 72 (25.3 bits), Expect = 0.00017, Sum P(3) = 0.00017
 Identities = 31/130 (23%), Positives = 56/130 (43%)

Query:   367 INASQKQLLPALT-EAWAKNPSLDHLPV------VLDWFNGRRSP---NANQRLKGVITD 416
             I +S KQL+  L  +    N      P+      +L +FNG R P   N    + G+ + 
Sbjct:   307 ITSSNKQLMNLLNIDIEELNQLAQQAPIGANGITILPFFNGERVPPLPNTKASILGLDSS 366

Query:   417 LNLATDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVL 476
              N   +   L   ++ +  F  R  ++ F   G+  + +  +GG A K+    Q   DV+
Sbjct:   367 -NFTREN--LCRAMMESATFTLRYGLDLFRQAGLKTSQIRLIGGGA-KSSFWRQMIADVM 422

Query:   477 NRPLQIVASDQCCA 490
             N  +  +  ++  A
Sbjct:   423 NSEVVCLQEEEAAA 436

 Score = 56 (19.7 bits), Expect = 0.00017, Sum P(3) = 0.00017
 Identities = 15/67 (22%), Positives = 30/67 (44%)

Query:     5 IGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIESMEAA 64
             IG+D G+   +A+ +D    + I         + K +     N +    P  +IE+++ A
Sbjct:     3 IGIDCGTQGTKAIVLDSVQKKVIGVG------YAKHELITQSNGRREQQPNWWIEALQQA 56

Query:    65 LKTVLAE 71
             L+  L +
Sbjct:    57 LQIALKQ 63


 >gi|1075455|pir||E64183  xylulose kinase (xylulokinase) homolog - Haemophilus
            influenzae (strain Rd KW20) >gi|1574667 (U32791) xylulose kinase
            [Haemophilus influenzae Rd]
            Length = 511

Local hits (HSPs):       _______             ________  ______________     
Annotated Domains:                    ___                   ___           
                        __________________________________________________
Database sequence:     |              |              |             |      | 511
                       0            150            300           450
__________________

Annotated Domains:
   PROSITE              FGGY_KINASES_1: FGGY family of carbohydr 154..166
   PROSITE              FGGY_KINASES_2: FGGY family of carbohydr 376..397
__________________


 Score = 81 (28.5 bits), Expect = 0.00020, Sum P(3) = 0.00020
 Identities = 25/74 (33%), Positives = 36/74 (48%)

Query:   223 FDELDPILNRHLPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGA 282
             F  L P LN     P      +A+  +G + PE A   G  E+V++S G  D  MGA+G 
Sbjct:   217 FKYLAPELNMDEVLPKLL---SAEQKIGVIKPEIATLFGFNENVIVSTGGGDNMMGAIGT 273

Query:   283 GAQPNALVKV-IGTS 296
             G     +  + +GTS
Sbjct:   274 GNIREGIATMSLGTS 288

 Score = 72 (25.3 bits), Expect = 0.00020, Sum P(3) = 0.00020
 Identities = 31/130 (23%), Positives = 56/130 (43%)

Query:   367 INASQKQLLPALT-EAWAKNPSLDHLPV------VLDWFNGRRSP---NANQRLKGVITD 416
             I +S KQL+  L  +    N      P+      +L +FNG R P   N    + G+ + 
Sbjct:   325 ITSSNKQLMNLLNIDIEELNQLAQQAPIGANGITILPFFNGERVPPLPNTKASILGLDSS 384

Query:   417 LNLATDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVL 476
              N   +   L   ++ +  F  R  ++ F   G+  + +  +GG A K+    Q   DV+
Sbjct:   385 -NFTREN--LCRAMMESATFTLRYGLDLFRQAGLKTSQIRLIGGGA-KSSFWRQMIADVM 440

Query:   477 NRPLQIVASDQCCA 490
             N  +  +  ++  A
Sbjct:   441 NSEVVCLQEEEAAA 454

 Score = 56 (19.7 bits), Expect = 0.00020, Sum P(3) = 0.00020
 Identities = 15/67 (22%), Positives = 30/67 (44%)

Query:     5 IGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIESMEAA 64
             IG+D G+   +A+ +D    + I         + K +     N +    P  +IE+++ A
Sbjct:    21 IGIDCGTQGTKAIVLDSVQKKVIGVG------YAKHELITQSNGRREQQPNWWIEALQQA 74

Query:    65 LKTVLAE 71
             L+  L +
Sbjct:    75 LQIALKQ 81


 >gi|4980607|gb|AAD35210.1|AE001697_10  (AE001697) sugar kinase, FGGY family
            [Thermotoga maritima]
            Length = 492

Local hits (HSPs):      ____     __________________     ____________      
                        __________________________________________________
Database sequence:     |               |              |              |    | 492
                       0             150            300            450

 Score = 85 (29.9 bits), Expect = 0.00025, Sum P(3) = 0.00025
 Identities = 38/180 (21%), Positives = 73/180 (40%)

Query:   117 VLWKDHTAVERSEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAAS 176
             +LW D    +  EE T++     NV   + +G      +   KIL + + +  +    + 
Sbjct:    98 ILWCDQRTYKECEEATQILGGEENV--LKLVGNPILPGFTLPKILWIRKHEPEIYGKISK 155

Query:   177 WIELCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPS 236
              +   D++  +L+G  + +            S+    W            D +   ++P 
Sbjct:   156 IMLPKDFINYMLTGEVKTE--HSDASGTVMYSVSKMEWNK----------DVLKELNIPE 203

Query:   237 PLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVG-AGAQPNALVKVIGT 295
              +  +   ++  VG + PE A  LGL E  ++ GG  D    A+G A  +P  ++  +GT
Sbjct:   204 SVLPEIIPSNGVVGNVKPEVASDLGLSEDTLVIGGGADNACAALGIAVVEPGDVMVSLGT 263

Query:   296 S 296
             S
Sbjct:   264 S 264

 Score = 71 (25.0 bits), Expect = 0.00025, Sum P(3) = 0.00025
 Identities = 23/108 (21%), Positives = 47/108 (43%)

Query:   385 NPSLDHLP------VVLDWFNGRRSPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGA 438
             N  +D +P      + L + NG R+P+ +   +GV   ++       +   +    AFG 
Sbjct:   322 NEEVDKIPAGSNGIIFLPYLNGERTPHRDPFARGVFFGISSYNTKWDMVRAIFEGVAFGI 381

Query:   439 RAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQ 487
             +   +   +  + +N+V   GG   K++V  +   D+    +Q  A D+
Sbjct:   382 KDSFDILRELKVVLNSVRITGG-GSKSRVWNKMLADMTGLRIQKPAVDE 429

 Score = 51 (18.0 bits), Expect = 0.00025, Sum P(3) = 0.00025
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query:     1 MAIAIGLDFGSDSVRALAVDCASGEEIATSVE 32
             M + +GLD G+  V+ + V+   GE +AT+ E
Sbjct:     1 MNLYVGLDVGTTGVKGILVN-EKGEILATANE 31


 >gi|4980782|gb|AAD35372.1|AE001710_7  (AE001710) sugar kinase, FGGY family
            [Thermotoga maritima]
            Length = 506

Local hits (HSPs):                          ________________________      
                        __________________________________________________
Database sequence:     |              |              |              |     | 506
                       0            150            300            450

 Score = 119 (41.9 bits), Expect = 0.00064, P = 0.00064
 Identities = 61/242 (25%), Positives = 100/242 (41%)

Query:   244 TADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGA-QPNALVKVIGTSTCDILI 302
             ++D+ VG +  E ++  GL E   +  G  D  +  + AGA +    V ++GTSTC   +
Sbjct:   213 SSDV-VGRVTKEASELCGLLEGTPVVAGGIDAPVAQLSAGALEEGEHVAMVGTSTCWGTV 271

Query:   303 ADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWPLEQLAAQHPE 362
              D   +    V       D   +  F     G +  G +  WF        EQ       
Sbjct:   272 HDGSKLAFGLVNYPYVVYDTERIYTF----GGSATTGALARWFK-------EQFGESETI 320

Query:   363 LKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRSPNANQRLKGVITDLNLATD 422
             +  +   S  QL     E  A  P+     +VL +F G RSP  +   +GV   + L   
Sbjct:   321 VGERTGISPYQLFDK--EV-ANIPAGSEGIIVLPYFMGERSPIWDPTARGVFFGVTLYHK 377

Query:   423 APLLFGGLIAATAFGARAIMECFTDQGIAVNN-VMALGGIARKNQVIMQACCDVLNRPLQ 481
                L+  L+   A+  R  ME     G+ +N+    +GG++ K+ V ++   DV    ++
Sbjct:   378 RAHLYRALMEGGAYALRHNMEEGLKAGLKLNDECWIVGGVS-KSSVWVKIFADVTGFKMR 436

Query:   482 IVAS 485
              VAS
Sbjct:   437 QVAS 440


 >gi|2648799  (AE000982) carbohydrate kinase, FGGY family [Archaeoglobus
            fulgidus]
            Length = 493

Local hits (HSPs):                         _____________  __________      
                        __________________________________________________
Database sequence:     |               |              |              |    | 493
                       0             150            300            450

 Score = 100 (35.2 bits), Expect = 0.0022, Sum P(2) = 0.0022
 Identities = 29/93 (31%), Positives = 49/93 (52%)

Query:   394 VLDWFNGRRSPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGIAVN 453
             +L +F+G   P+ N   KGVI  L LA +   +   ++ A AF  R+ +E   ++GI++ 
Sbjct:   340 ILPFFSGAGCPHWNPEAKGVIFGLTLAHNRGDIARAVMEAVAFEVRSNIEVMENKGISIE 399

Query:   454 NVMALGGIARKNQVIMQACCDVLNRPLQIVASD 486
              +   GG A  +++  Q   DV  R   +V+SD
Sbjct:   400 ELRLDGGAAN-SRLWNQIFADVTGRKC-LVSSD 430

 Score = 58 (20.4 bits), Expect = 0.0022, Sum P(2) = 0.0022
 Identities = 32/121 (26%), Positives = 48/121 (39%)

Query:   224 DELDPILNRHLPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAG 283
             DE+    N  L   L  D   +   VG +    A++LG+  + V+  G  D    A+  G
Sbjct:   197 DEIAAEFNLDLS--LMPDLVNSGEVVGEIRGNVAEKLGISSNPVVVAGGGDQQCSALAQG 254

Query:   284 AQPNALVK-VIGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGF-IGLEAGQSAFGDI 341
                   VK   GT T   ++A  + V  R    I       V+PG  +G E      G +
Sbjct:   255 VVEEGSVKSTTGTGT--FMVAPVEKV--RGHGDII--YSAHVLPGINVG-EVSIFTTGSL 307

Query:   342 YAW 344
              +W
Sbjct:   308 LSW 310


 >gi|139849|sp|P09099|XYLB_ECOLI  XYLULOSE KINASE (XYLULOKINASE)
            >gi|66669|pir||KIECXY xylulokinase (EC 2.7.1.17) - Escherichia coli
            >gi|43315|emb|CAA28395.1| (X04691) xylulose kinase (AA 1-484)
            [Escherichia coli] >gi|148280 (K01996) xylulose kinase [Escherichia
            coli] >gi|466702 (U00039) xylulokinase [Escherichia coli]
            >gi|1789987 (AE000433) xylulokinase [Escherichia coli]
            Length = 484

Local hits (HSPs):      ___                  ________  ____________       
Annotated Domains:      _____  ______________________________________     
                        __________________________________________________
Database sequence:     |               |              |               |   | 484
                       0             150            300             450
__________________

Annotated Domains:
   PFAM                 FGGY: FGGY family of carbohydrate kinase 71..429
   BLOCKS               BL00933A: FGGY family of carbohydrate ki 1..24
   BLOCKS               BL00933B: FGGY family of carbohydrate ki 35..45
   BLOCKS               BL00933C: FGGY family of carbohydrate ki 119..138
   BLOCKS               BL00933D: FGGY family of carbohydrate ki 166..202
   BLOCKS               BL00933E: FGGY family of carbohydrate ki 394..409
   PROSITE              FGGY_KINASES_1: FGGY family of carbohydr 126..138
   PROSITE              FGGY_KINASES_2: FGGY family of carbohydr 347..367
   PROSITE              PROKAR_LIPOPROTEIN: Prokaryotic membrane 287..297
   PROSITE              TYR_PHOSPHO_SITE: Tyrosine kinase phosph 363..371
__________________


 Score = 73 (25.7 bits), Expect = 0.065, Sum P(3) = 0.063
 Identities = 24/69 (34%), Positives = 33/69 (47%)

Query:   250 GTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAG-AQPNALVKVIGTSTCDILIADK-QS 307
             G L PE A+  G+    V++GG  D   GAVG G    N  +  +GTS     +++   S
Sbjct:   210 GALLPEVAKAWGMATVPVVAGGG-DNAAGAVGVGMVDANQAMLSLGTSGVYFAVSEGFLS 268

Query:   308 VGERAVKGIC 317
               E AV   C
Sbjct:   269 KPESAVHSFC 278

 Score = 65 (22.9 bits), Expect = 0.065, Sum P(3) = 0.063
 Identities = 28/106 (26%), Positives = 45/106 (42%)

Query:   375 LPALTEAWAKNPSLDHLPV-VLDWFNGRRSPNANQRLKGVITDLNLATDAPLLFGGLIAA 433
             +PAL  A A+       PV  L + +G R+P+ N + KGV   L        L   ++  
Sbjct:   310 VPALIAA-AQQADESAEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELARAVLEG 368

Query:   434 TAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPL 480
               +     M+     GI   +V  +GG AR ++   Q   D+  + L
Sbjct:   369 VGYALADGMDVVHACGIKPQSVTLIGGGAR-SEYWRQMLADISGQQL 414

 Score = 45 (15.8 bits), Expect = 0.065, Sum P(3) = 0.063
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query:     5 IGLDFGSDSVRALAVDCASGEEIATSVE 32
             IG+D G+  V+ + ++   GE +A   E
Sbjct:     3 IGIDLGTSGVKVILLN-EQGEVVAAQTE 29


 >gi|267426|sp|P29444|XYLB_KLEAE  XYLULOSE KINASE (XYLULOKINASE)
            >gi|281982|pir||S25070 xylulokinase (EC 2.7.1.17) - Klebsiella
            pneumoniae >gi|43953|emb|CAA43390| (X61059) xylulokinase
            [Klebsiella pneumoniae]
            Length = 483

Local hits (HSPs):      ___        __________________  ______             
Annotated Domains:      _____  ______________________________________     
                        __________________________________________________
Database sequence:     |               |              |               |   | 483
                       0             150            300             450
__________________

Annotated Domains:
   PFAM                 FGGY: FGGY family of carbohydrate kinase 71..428
   BLOCKS               BL00933A: FGGY family of carbohydrate ki 1..24
   BLOCKS               BL00933B: FGGY family of carbohydrate ki 35..45
   BLOCKS               BL00933C: FGGY family of carbohydrate ki 119..138
   BLOCKS               BL00933D: FGGY family of carbohydrate ki 166..202
   BLOCKS               BL00933E: FGGY family of carbohydrate ki 229..244
   PROSITE              FGGY_KINASES_1: FGGY family of carbohydr 126..138
   PROSITE              FGGY_KINASES_2: FGGY family of carbohydr 347..367
   PROSITE              PROKAR_LIPOPROTEIN: Prokaryotic membrane 287..297
   PROSITE              TYR_PHOSPHO_SITE: Tyrosine kinase phosph 363..371
__________________


 Score = 82 (28.9 bits), Expect = 0.083, Sum P(3) = 0.080
 Identities = 51/177 (28%), Positives = 79/177 (44%)

Query:   141 VDYSRYIGGIYSSEWFWA-KILHVTRQDSAVAQSAASWIELCDWVPALLSGTTRPQDIRR 199
             V  SR I G      F A K+L V R ++AV       +   D++   ++G     D+  
Sbjct:   112 VSASRQITGNLMMPGFTAPKLLWVQRHEAAVFSQVDKVLLPKDYLRLRMTGELA-SDMSD 170

Query:   200 GRCSAGHKSLWHESWGGLPPASFFDELDPI--LNRHLPSPLFTDTWTADIPVGTLCPEWA 257
                +AG  ++W +    +    + DE+     L+R     LF  +   D+  G L PE A
Sbjct:   171 ---AAG--TMWLD----VARRDWSDEMLAACDLSRDAMPALFEGS---DV-TGQLRPEVA 217

Query:   258 QRLGLPESVVISGGAFDCHMGAVGAG-AQPNALVKVIGTSTCDILIADK-QSVGERAVKG 315
             Q   +P ++V+ GG  D   GAVG G A     +  +GTS     +++   S  E AV  
Sbjct:   218 QAWNMPPALVVGGGG-DNAAGAVGIGMADAGQAMLSLGTSGVYFAVSEGFLSKPESAVHS 276

Query:   316 IC 317
              C
Sbjct:   277 FC 278

 Score = 50 (17.6 bits), Expect = 0.083, Sum P(3) = 0.080
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query:   375 LPALTEAWAKNPSLDHLPV-VLDWFNGRRSPNANQRLKGVITDL 417
             +PAL  A A+       PV  L + +G R+P+ N + KGV   L
Sbjct:   310 VPALIAA-AQTADESAGPVWFLPYLSGERTPHNNPQAKGVFFGL 352

 Score = 49 (17.2 bits), Expect = 0.083, Sum P(3) = 0.080
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query:     5 IGLDFGSDSVRALAVDCASGEEIATSVE 32
             IG+D G+  V+A+ ++   GE +A+  E
Sbjct:     3 IGIDLGTSGVKAILLN-EQGEVVASHTE 29


 >gi|2911003|emb|CAA17496|  (AL021958) xylB [Mycobacterium tuberculosis]
            Length = 448

Local hits (HSPs):      ___                              __________       
                        __________________________________________________
Database sequence:     |                |                |                | 448
                       0              150              300

 Score = 91 (32.0 bits), Expect = 0.13, Sum P(2) = 0.12
 Identities = 27/92 (29%), Positives = 44/92 (47%)

Query:   391 LPVVLDWFNGRRSPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGI 450
             +PV L +  G R+P      + V+  ++L+ DA  +      A+ F  R ++E     G 
Sbjct:   297 VPVWLPYIRGERTPFHEPDRRAVLDGVDLSQDAASVRRAAYEASGFVVRQLIEL---SGA 353

Query:   451 AVNNVMALGGIARKNQVIMQACCDVLNRPLQI 482
              V  ++A GG  R  Q  MQA  D   RP+++
Sbjct:   354 PVARIVAAGGGTRI-QPWMQAIADATGRPVEV 384

 Score = 49 (17.2 bits), Expect = 0.13, Sum P(2) = 0.12
 Identities = 8/18 (44%), Positives = 14/18 (77%)

Query:     3 IAIGLDFGSDSVRALAVD 20
             + IG+D G+ +V+A+A D
Sbjct:     6 VTIGIDIGTTAVKAVAAD 23


 >gi|145313  (K01304) L-ribulokinase (araB) [Escherichia coli]
           Length = 14

Local hits (HSPs):      __________________________________________________
                        __________________________________________________
Database sequence:     |                                                  | 14
                       0 

 Score = 67 (23.6 bits), Expect = 0.74, P = 0.53
 Identities = 14/14 (100%), Positives = 14/14 (100%)

Query:     1 MAIAIGLDFGSDSV 14
             MAIAIGLDFGSDSV
Sbjct:     1 MAIAIGLDFGSDSV 14


 >gi|139850|sp|P21939|XYLB_LACPE  XYLULOSE KINASE (XYLULOKINASE)
            >gi|98676|pir||S18562 xylulokinase (EC 2.7.1.17) - Lactobacillus
            pentosus >gi|149607 (M57384) D-xylulose kinase [Lactobacillus
            pentosus] >gi|228459|prf||1804334C xylB gene [Lactobacillus
            pentosus]
            Length = 501

Local hits (HSPs):      ________             _______                      
Annotated Domains:      ___    _____________________________________      
                        __________________________________________________
Database sequence:     |              |              |              |     | 501
                       0            150            300            450
__________________

Annotated Domains:
   PFAM                 FGGY: FGGY family of carbohydrate kinase 76..436
   BLOCKS               BL00933A: FGGY family of carbohydrate ki 4..27
   BLOCKS               BL00933B: FGGY family of carbohydrate ki 96..106
   BLOCKS               BL00933C: FGGY family of carbohydrate ki 125..144
   BLOCKS               BL00933D: FGGY family of carbohydrate ki 172..208
   BLOCKS               BL00933E: FGGY family of carbohydrate ki 402..417
   PROSITE              CRYSTALLIN_BETAGAMMA: Crystallins beta a 280..295
   PROSITE              FGGY_KINASES_1: FGGY family of carbohydr 132..144
   PROSITE              FGGY_KINASES_2: FGGY family of carbohydr 355..375
__________________


 Score = 77 (27.1 bits), Expect = 1.0, Sum P(2) = 0.64
 Identities = 26/66 (39%), Positives = 32/66 (48%)

Query:   249 VGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAG--AQPNALVKVIGTSTCDILIADKQ 306
             VG +   +AQ  GL  +  + GGA D   GAVGAG  +   ALV  IGTS   +   D  
Sbjct:   215 VGHINQTYAQLSGLSVNTKVFGGAADNAAGAVGAGILSSDKALVS-IGTSGVVLKYEDNA 273

Query:   307 SVGERAV 313
                 R V
Sbjct:   274 QTDYRGV 280

 Score = 56 (19.7 bits), Expect = 1.0, Sum P(2) = 0.64
 Identities = 18/75 (24%), Positives = 38/75 (50%)

Query:     2 AIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHH-PRDYIES 60
             A+ +G+D G+ +V+  A+D   G  +A +   Y   Q       P+  +    P D++  
Sbjct:     3 AVVLGIDLGTSAVKVSAID-KQGNVVAQASAKYALQQ-------PHPGYSEQDPEDWVTQ 54

Query:    61 MEAALKTVL--AELSVEQ 76
                A++ +L  +E++ +Q
Sbjct:    55 TTQAIRELLQQSEVTADQ 72


 >gi|804654  (L42008) xylulose kinase [Bacillus sp.]
           Length = 367

Local hits (HSPs):        ________                   __________           
                        __________________________________________________
Database sequence:     |                    |                   |         | 367
                       0                  150                 300

 Score = 82 (28.9 bits), Expect = 2.1, Sum P(2) = 0.88
 Identities = 26/67 (38%), Positives = 40/67 (59%)

Query:   249 VGTLCPEWAQRLGLPESVVISGGAFDCHM-GAVGAGA-QPNALVKVIGTSTCDILIADKQ 306
             VGTL PE A+ +GLP +V +   A    + GAVGAG      ++  IGTS   +++A +Q
Sbjct:   221 VGTLLPEIAEEMGLPANVKVFWPAVPTMLCGAVGAGILSEGRMMCSIGTS--GVVLAYEQ 278

Query:   307 SVGERAVKG 315
             + G++   G
Sbjct:   279 T-GKKDFAG 286

 Score = 44 (15.5 bits), Expect = 2.1, Sum P(2) = 0.88
 Identities = 13/53 (24%), Positives = 26/53 (49%)

Query:    21 CASGEEIATSVEWYPRWQKGQFCDAPNNQFRH-HPRDYIESMEAALKTVLAELS 73
             CA G  +  +      W +    + P++ +   +P D++E    AL+ +L E+S
Sbjct:    19 CAKGLLVDRNGNVKGEWTEAYPLNQPHSGYSEPNPEDWVEKTIVALRKLL-EVS 71


 >gi|139851|sp|P27155|XYLB_STAXY  XYLULOSE KINASE (XYLULOKINASE)
            >gi|97876|pir||S16531 xylulokinase (EC 2.7.1.17) - Staphylococcus
            xylosus >gi|48836|emb|CAA40825| (X57599) xylulokinase
            [Staphylococcus xylosus]
            Length = 483

Local hits (HSPs):      ____                  _____        __________     
Annotated Domains:      ___    ______________________________________     
                        __________________________________________________
Database sequence:     |               |              |               |   | 483
                       0             150            300             450
__________________

Annotated Domains:
   PFAM                 FGGY: FGGY family of carbohydrate kinase 73..434
   BLOCKS               BL00933A: FGGY family of carbohydrate ki 3..26
   BLOCKS               BL00933B: FGGY family of carbohydrate ki 93..103
   BLOCKS               BL00933C: FGGY family of carbohydrate ki 123..142
   BLOCKS               BL00933D: FGGY family of carbohydrate ki 170..206
   BLOCKS               BL00933E: FGGY family of carbohydrate ki 400..415
   PROSITE              FGGY_KINASES_1: FGGY family of carbohydr 130..142
   PROSITE              FGGY_KINASES_2: FGGY family of carbohydr 353..373
   PROSITE              TYR_PHOSPHO_SITE: Tyrosine kinase phosph 140..147
   PROSITE              TYR_PHOSPHO_SITE: Tyrosine kinase phosph 369..377
__________________


 Score = 70 (24.6 bits), Expect = 2.8, Sum P(3) = 0.94
 Identities = 18/88 (20%), Positives = 39/88 (44%)

Query:   400 GRRSPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALG 459
             G R+P+ +  ++G    L+  T    +   +I    +     +    +  I +N ++++G
Sbjct:   341 GERTPHNDASVRGSFIGLDANTTQLDMKRAVIEGITYSINESIHIMKNNAININEIVSIG 400

Query:   460 GIARKNQVIMQACCDVLNRPLQIVASDQ 487
             G A+ NQ + Q   D+ N  +     +Q
Sbjct:   401 GGAKNNQWL-QIQADIFNTTITTRTEEQ 427

 Score = 50 (17.6 bits), Expect = 2.8, Sum P(3) = 0.94
 Identities = 12/33 (36%), Positives = 22/33 (66%)

Query:     1 MAIAIGLDFGSDSVRALAVDCASGEEIAT-SVEW 33
             MA  IG+D G+ +++ L V+  SG+ + + SV +
Sbjct:     1 MAYVIGIDIGTSALKTLVVN-KSGDVVESYSVSY 33

 Score = 46 (16.2 bits), Expect = 2.8, Sum P(3) = 0.94
 Identities = 18/48 (37%), Positives = 26/48 (54%)

Query:   250 GTLCPEWAQRLGLPESV-VISGGAFDCHMGAVGAGA--QPNALVKVIGTS 296
             G L  +    LG+  ++ V  GGA +   GA+G+G   +   LV  IGTS
Sbjct:   214 GQLTEKVKNTLGIDSNINVYQGGANNA-CGALGSGITDEQKQLVS-IGTS 261


 >gi|1546887|emb|CAB02315|  (Z80222) Xylulokinase [Bacillus licheniformis]
            Length = 475

Local hits (HSPs):      ___                 ________     ___________      
                        __________________________________________________
Database sequence:     |               |               |               |  | 475
                       0             150             300             450

 Score = 67 (23.6 bits), Expect = 2.8, Sum P(3) = 0.94
 Identities = 23/95 (24%), Positives = 45/95 (47%)

Query:   393 VVLDWFNGRRSPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGIAV 452
             ++L   +G R+P+A+  +   I   +  T A  +   +I    F     +E     G  +
Sbjct:   323 LLLPLLSGERTPHADADIASFIGMDSAHTRADFV-RAVIEGITFSLHESIEQSAAGGKDI 381

Query:   453 NNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQ 487
             + V+++GG A+ NQ + Q   D+ N  +  + S+Q
Sbjct:   382 SRVISIGGGAKSNQWL-QIQADIFNADIIRLTSEQ 415

 Score = 60 (21.1 bits), Expect = 2.8, Sum P(3) = 0.94
 Identities = 23/63 (36%), Positives = 27/63 (42%)

Query:   234 LPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVI 293
             +P  L  D       VG L PE+A   GL   V +  GA D   G V    +  AL   I
Sbjct:   200 IPESLCPDLIEPGACVGGLRPEFAAETGLSPEVKVFAGA-DNACGRVAILKEGTALCS-I 257

Query:   294 GTS 296
             GTS
Sbjct:   258 GTS 260

 Score = 39 (13.7 bits), Expect = 2.8, Sum P(3) = 0.94
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query:     1 MAIAIGLDFGSDSVRALAVD 20
             M   IG+D G+ +V+ + V+
Sbjct:     1 MEYVIGVDLGTSTVKIILVN 20


 >gi|4505991  ref|NP_000934.1|pPPIC| peptidylprolyl isomerase C (cyclophilin C);
            Cyp-C >gi|1169178|sp|P45877|CYPC_HUMAN PEPTIDYL-PROLYL CIS-TRANS
            ISOMERASE C (PPIASE) (ROTAMASE) (CYCLOPHILIN C)
            >gi|627417|pir||A54204 peptidylprolyl isomerase (EC 5.2.1.8) C
            precursor - human >gi|547304|bbs|149388 (S71018) cyclophilin C,
            Cyp-C [human, kidney, Peptide, 212 aa] [Homo sapiens]
            Length = 212

Local hits (HSPs):       _____________________                            
                        __________________________________________________
Database sequence:     |           |           |           |          |   | 212
                       0          50         100         150        200

 Score = 80 (28.2 bits), Expect = 3.1, P = 0.95
 Identities = 31/91 (34%), Positives = 43/91 (47%)

Query:   259 RLGLPESVVISGGAFDCHMGAVGAGAQ-PNALVKVIGTSTCDILIADKQSVGERAVKGIC 317
             RL LP  + +  GA     GA G   + P+   KV      D+ I DK  VG R V G+ 
Sbjct:     6 RLLLPLVLCVGLGALVFSSGAEGFRKRGPSVTAKVF----FDVRIGDKD-VG-RIVIGLF 59

Query:   318 GQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVL 349
             G+V    V  F+ L  G+  +G   + F RV+
Sbjct:    60 GKVVPKTVENFVALATGEKGYGYKGSKFHRVI 91


 >gi|2619021  (AF027868) xylulose kinase [Bacillus subtilis]
            >gi|2634249|emb|CAB13748| (Z99114) similar to xylulokinase
            [Bacillus subtilis]
            Length = 487

Local hits (HSPs):                   ______________                       
                        __________________________________________________
Database sequence:     |               |              |               |   | 487
                       0             150            300             450

 Score = 84 (29.6 bits), Expect = 4.1, P = 0.98
 Identities = 39/139 (28%), Positives = 59/139 (42%)

Query:   159 KILHVTRQDSAVAQSAASWIELCDWVPALLSG--TTRPQDIRRGRCSAGHKSLWHESWGG 216
             K+  + ++  ++ +  AS+  + DWV   LSG  T  P            ++ W E    
Sbjct:   136 KLYGLKQRQPSLWEKTASFTSISDWVTYQLSGILTYEPSQATETLLFDVKQNTWSEEM-- 193

Query:   217 LPPASFFDELDPILNRHLPSPLFTDTWTADIPVGTLCPEWAQRLGLP-ESVVISGGAFDC 275
                   F    P +   LP PL      A   +GT+  E+A  LGL   + VI+GG  D 
Sbjct:   194 ---CDIFG-FSPSI---LP-PLVR----AGTAIGTIANEYASELGLSINAKVIAGGG-DT 240

Query:   276 HMGAVGAGAQPNALVKVIGTST 297
              +     GA    +V V GT+T
Sbjct:   241 QLAVKSTGAGLEDIVIVSGTTT 262


 >gi|3122149|sp|O34154|GLPK_ENTFA  GLYCEROL KINASE (ATP:GLYCEROL
            3-PHOSPHOTRANSFERASE) (GLYCEROKINASE) (GK) >gi|2388637 (U94356)
            glycerol kinase [Enterococcus faecalis]
            Length = 501

Local hits (HSPs):                                      ___________       
Annotated Domains:      _____  ______________________________________     
                        __________________________________________________
Database sequence:     |              |              |              |     | 501
                       0            150            300            450
__________________

Annotated Domains:
   PFAM                 FGGY: FGGY family of carbohydrate kinase 78..444
   BLOCKS               BL00933A: FGGY family of carbohydrate ki 6..29
   BLOCKS               BL00933B: FGGY family of carbohydrate ki 40..50
   BLOCKS               BL00933C: FGGY family of carbohydrate ki 129..148
   BLOCKS               BL00933D: FGGY family of carbohydrate ki 181..217
   BLOCKS               BL00933E: FGGY family of carbohydrate ki 410..425
   PROSITE              FGGY_KINASES_1: FGGY family of carbohydr 136..148
   PROSITE              FGGY_KINASES_2: FGGY family of carbohydr 362..382
__________________


 Score = 84 (29.6 bits), Expect = 4.3, P = 0.99
 Identities = 32/105 (30%), Positives = 49/105 (46%)

Query:   377 ALTEAWAKNPSLDHLPV-VLDWFNGRRSPNANQRLKGVITDLNLATDAPLLFGGLIAATA 435
             A +EA AK  S  H  V V+  F G  +P  + + +G +  L   T         + A A
Sbjct:   327 AESEAVAK-ASTGHNEVYVVPAFTGLGAPYWDSQARGAVFGLTRGTTREDFVKATLQAVA 385

Query:   436 FGARAIMECFT-DQGIAVNNVMALGGIARKNQVIMQACCDVLNRPLQ 481
             +  R I++    D GI +  V+ + G A  N  +MQ   D+LN  +Q
Sbjct:   386 YQVRDIIDTMKEDTGIDIP-VLKVDGGAANNDFLMQFQADILNTAVQ 431


 >gi|421644|pir||S30402  hypothetical protein 5 - Streptomyces clavuligerus
            >gi|48761|emb|CAA38042| (X54107) ORF5 [Streptomyces clavuligerus]
            Length = 145

Local hits (HSPs):                        _______________________________ 
                        __________________________________________________
Database sequence:     |                |                 |               | 145
                       0               50               100

 Score = 75 (26.4 bits), Expect = 4.4, P = 0.99
 Identities = 28/91 (30%), Positives = 36/91 (39%)

Query:   193 RPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFTDTWTADIPVGTL 252
             RP   +  RC  GH+  +H    G   A + + LD    R   +    D W   +P    
Sbjct:    54 RPSVSKDARCRCGHELSFHRGTAGCTVAGWDEWLDCSCERFRAAE--AD-WHVGMPACRH 110

Query:   253 CPEWAQ-RLGLPESVVISGGAFDC-HMGAVGAG 283
             C   AQ  LG+ E      GA  C H  A G G
Sbjct:   111 CRHSAQDHLGI-EGPCSGKGACGCYHFSASGVG 142


 >gi|508521  (L34345) xylulokinase [Morganella morganii]
           Length = 471

Local hits (HSPs):                             ____            _______    
                        __________________________________________________
Database sequence:     |               |               |               |  | 471
                       0             150             300             450

 Score = 74 (26.0 bits), Expect = 4.5, Sum P(2) = 0.99
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query:   249 VGTLCPEWAQRLGL-PESVVISGGAFDCHMGAVGAG 283
             +GT+ PE A++LG+ PE+  I GG  D  M A+G G
Sbjct:   220 IGTVRPEIAEKLGISPETACIGGG--DNMMAAIGTG 253

 Score = 52 (18.3 bits), Expect = 4.5, Sum P(2) = 0.99
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query:   430 LIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQ 487
             ++ +  +G R  ++ F  QGI  + +   GG AR  +   Q    ++  P+  V + +
Sbjct:   370 VVESATYGLRFGIDLFRQQGITTSEIRLTGGGARSVKW-RQIVAHIMAAPVVCVTNQE 426


 >gi|5103405|dbj|BAA78926.1|  (AP000058) 513aa long hypothetical xylulose kinase
            [Aeropyrum pernix]
            Length = 513

Local hits (HSPs):       _____             _________________________      
                        __________________________________________________
Database sequence:     |              |              |             |      | 513
                       0            150            300           450

 Score = 81 (28.5 bits), Expect = 6.3, Sum P(2) = 1.0
 Identities = 60/249 (24%), Positives = 96/249 (38%)

Query:   242 TWTADIPVGTLC--PEWAQRLGLP-ESVVISGGAFDCHMGAVGAGAQ----PNALVKVIG 294
             TW AD   G     P  A+R G+P E +    G  D   G V + A+    P  +  ++G
Sbjct:   200 TWLADTRGGRAVWSPRLARRYGIPLEKLPGIAGPTDVAGGLVSSAARDLGLPQGIPVIVG 259

Query:   295 TSTCDILIADKQSVGERAVKGICGQVDGSV-VPGFIGLEAGQSAFGDIYAWFGRVLSW-P 352
                 DI      +VG  A+    G+    V    +IG+ + +    D+  + G +LS  P
Sbjct:   260 AG--DIA---SSAVGSGALAA--GEYHIYVGTSSWIGVHSTRRLL-DVRHYIGSLLSAKP 311

Query:   353 LEQLAAQHPELKAQ----INASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRSPNANQ 408
              E L     E+       I         A+ +  +  P  + L +   W  G R+P  + 
Sbjct:   312 GEYLVIGEQEIAGGMIDWILDVTGMDYRAVEDIHSIPPGSEGL-IATPWLYGERTPIDDP 370

Query:   409 RLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVI 468
               KGV+  L L      L    +   A      ME  T        V  +GG  R  + +
Sbjct:   371 HAKGVLVGLTLRHTKKHLVRAAVEGVALNIAWAMEHMTRLAGKPKLVRGVGGGFRL-RTL 429

Query:   469 MQACCDVLNRPLQIVASDQ 487
              +     LN  ++ V+  +
Sbjct:   430 AKVIASALNATIETVSQPE 448

 Score = 44 (15.5 bits), Expect = 6.3, Sum P(2) = 1.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query:     5 IGLDFGSDSVRALAVDCASGE-----EIATSVEWYPR--WQK 39
             + +D G+  ++A  VDC + E      ++T V  YPR  W +
Sbjct:    15 LSIDIGTTRIKAGLVDCNTLEITGRGSVSTPVS-YPRKGWSE 55


 >gi|2960138|emb|CAA18036.1|  (AL022121) hypothetical protein Rv3714c
            [Mycobacterium tuberculosis]
            Length = 296

Local hits (HSPs):                 ___________________                    
                        __________________________________________________
Database sequence:     |        |       |        |       |        |       | 296
                       0       50     100      150     200      250

 Score = 65 (22.9 bits), Expect = 6.3, Sum P(2) = 1.0
 Identities = 21/66 (31%), Positives = 36/66 (54%)

Query:   251 TLCPEWAQRL-GLPESVVISGGAFDC--HMGAVGAGAQPNALVKVIGTSTCDILIADKQS 307
             TLC +   R+ GLP +  ++  A+D   H+    A A+ +AL++    S  D+L+  K+ 
Sbjct:   113 TLCDDEITRVVGLPVTT-LARTAYDLGRHLSRGEAVARLDALMRATPFSRDDVLLLAKRH 171

Query:   308 VGERAVK 314
              G R V+
Sbjct:   172 AGARGVR 178

 Score = 55 (19.4 bits), Expect = 6.3, Sum P(2) = 1.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query:   164 TRQDSAVAQSAASWIELCDWVPA-----LLSGTTRPQ 195
             TR+   +A +AAS +    WV       L+S TTRPQ
Sbjct:    68 TRRHGVIAGNAASALHGAQWVDVDVAIELISPTTRPQ 104


 >gi|4980950|gb|AAD35528.1|AE001722_12  (AE001722) gluconate kinase [Thermotoga
            maritima]
            Length = 476

Local hits (HSPs):                           ________    __________       
                        __________________________________________________
Database sequence:     |               |               |               |  | 476
                       0             150             300             450

 Score = 66 (23.2 bits), Expect = 6.5, Sum P(2) = 1.0
 Identities = 21/88 (23%), Positives = 38/88 (43%)

Query:   393 VVLDWFNGRRSPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQG-IA 451
             V L + NG R+P+  +R +GV+  L  +     +    +    F  + I       G + 
Sbjct:   319 VFLPFLNGERAPHWRERYRGVLVGLTSSHRRSDIARAALEGICFRIKDIHNAVKRVGSVD 378

Query:   452 VNNVMALGGIARKNQVIMQACCDVLNRPL 480
              N ++A GG    +   +Q   DVL + +
Sbjct:   379 PNRIVATGGFT-SSPYWVQLLSDVLGKDI 406

 Score = 59 (20.8 bits), Expect = 6.5, Sum P(2) = 1.0
 Identities = 18/67 (26%), Positives = 30/67 (44%)

Query:   255 EWAQRLGLPESVVISGGAFDCHMGAVGAGAQ-PNALVKVIGTSTCDILIADKQSVGERAV 313
             E A+ LG  +  ++ GG  D  M  VG     P++    IGTS    ++ D+  +    +
Sbjct:   206 EIAKELGFKKVYLVLGGG-DGVMTNVGVNVMDPDSATVTIGTSGAFRVVMDRPVIDREGI 264

Query:   314 KGICGQVD 321
                C  +D
Sbjct:   265 STWCYLID 272


 >gi|231961|sp|P30412|CYPC_MOUSE  PEPTIDYL-PROLYL CIS-TRANS ISOMERASE C (PPIASE)
            (ROTAMASE) (CYCLOPHILIN C) >gi|91167|pir||A40047 peptidylprolyl
            isomerase (EC 5.2.1.8) (cyclophilin C) - mouse >gi|192899 (M74227)
            cyclophilin C [Mus musculus]
            Length = 212

Local hits (HSPs):       _____________________                            
Annotated Domains:              _______________________________________   
                        __________________________________________________
Database sequence:     |           |           |           |          |   | 212
                       0          50         100         150        200
__________________

Annotated Domains:
   PFAM                 pro_isomerase: Peptidyl-prolyl cis-trans 39..200
   PRINTS               CSAPPISMRASE1: Cyclophilin motif I - 2   58..73
   PRINTS               CSAPPISMRASE2: Cyclophilin motif II - 2  87..99
   PRINTS               CSAPPISMRASE3: Cyclophilin motif III - 2 130..145
   PRINTS               CSAPPISMRASE4: Cyclophilin motif IV - 2  145..157
   PRINTS               CSAPPISMRASE5: Cyclophilin motif V - 2   158..173
   BLOCKS               BL00170A: Cyclophilin-type peptidyl-prol 52..78
   BLOCKS               BL00170B: Cyclophilin-type peptidyl-prol 82..121
   BLOCKS               BL00170C: Cyclophilin-type peptidyl-prol 129..173
   PROSITE              CSA_PPIASE_1: Cyclophilin-type peptidyl- 82..99
__________________


 Score = 77 (27.1 bits), Expect = 6.7, P = 1.0
 Identities = 30/91 (32%), Positives = 42/91 (46%)

Query:   259 RLGLPESVVISGGAFDCHMGAVGAGAQ-PNALVKVIGTSTCDILIADKQSVGERAVKGIC 317
             RL LP  + +  GA     G+ G   + P+   KV      D+ I DK  VG R V G+ 
Sbjct:     6 RLLLPAVLCLGLGALVSSSGSSGVRKRGPSVTDKVF----FDVRIGDKD-VG-RIVIGLF 59

Query:   318 GQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVL 349
             G V    V  F+ L  G+  +G   + F RV+
Sbjct:    60 GNVVPKTVENFVALATGEKGYGYKGSIFHRVI 91


 >gi|4580953|gb|AAD24551.1|AF117734_1  (AF117734) glycerol kinase-like protein 2
            [Mus musculus]
            Length = 554

Local hits (HSPs):                                      _________         
                        __________________________________________________
Database sequence:     |             |            |             |         | 554
                       0           150          300           450

 Score = 82 (28.9 bits), Expect = 8.0, P = 1.0
 Identities = 22/83 (26%), Positives = 42/83 (50%)

Query:   398 FNGRRSPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFT-DQGIAVNNVM 456
             F+G  +P      +G+I  L   T+   +    + A  F  R I++    D GI ++++ 
Sbjct:   364 FSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAMNRDCGIPLSHLQ 423

Query:   457 ALGGIARKNQVIMQACCDVLNRPL 480
               GG+   N+++MQ   D+L+ P+
Sbjct:   424 VDGGMTN-NRILMQLQADILHIPV 446


 >gi|120588|sp|P11553|FUCK_ECOLI  L-FUCULOKINASE >gi|66670|pir||KIECFK fucokinase
            (EC 2.7.1.52) - Escherichia coli >gi|41506|emb|CAA33128| (X15025)
            fucK ORF (AA 1-482) [Escherichia coli] >gi|882698 (U29581)
            L-fuculose kinase [Escherichia coli] >gi|1789168 (AE000364)
            L-fuculokinase [Escherichia coli]
            Length = 482

Local hits (HSPs):       ___                 ______________               
Annotated Domains:       ___    ______________________________________    
                        __________________________________________________
Database sequence:     |               |               |              |   | 482
                       0             150             300            450
__________________

Annotated Domains:
   PFAM                 FGGY: FGGY family of carbohydrate kinase 87..443
   BLOCKS               BL00933A: FGGY family of carbohydrate ki 15..38
   BLOCKS               BL00933B: FGGY family of carbohydrate ki 107..117
   BLOCKS               BL00933C: FGGY family of carbohydrate ki 137..156
   BLOCKS               BL00933D: FGGY family of carbohydrate ki 184..220
   BLOCKS               BL00933E: FGGY family of carbohydrate ki 409..424
   PROSITE              FGGY_KINASES_1: FGGY family of carbohydr 144..156
   PROSITE              FGGY_KINASES_2: FGGY family of carbohydr 361..381
__________________


 Score = 82 (28.9 bits), Expect = 8.4, Sum P(2) = 1.0
 Identities = 39/121 (32%), Positives = 52/121 (42%)

Query:   234 LPSPLFTDTWTADIPVGTLCPEWAQRLGLPESV-VISGGAFDCHMGAVGAGAQPNALVKV 292
             +P  LF     A   +GTL    A  LGLP  + VIS G  D      GAGA+ N    V
Sbjct:   212 IPRRLFPRLVEAGEQIGTLQNSAAAMLGLPVGIPVISAG-HDTQFALFGAGAEQNE--PV 268

Query:   293 IGTSTCDILIADKQSVGERAVKGICG---QVD---GSVVPGFIGLEAGQSAFGDIYAWFG 346
             + + T +IL+     V    +    G   ++D   G   PG   L +G      +  W  
Sbjct:   269 LSSGTWEILMVRSAQVDTSLLSQYAGSTCELDSQAGLYNPGMQWLASG------VLEWV- 321

Query:   347 RVLSWPLE 354
             R L W  E
Sbjct:   322 RKLFWTAE 329

 Score = 41 (14.4 bits), Expect = 8.4, Sum P(2) = 1.0
 Identities = 10/26 (38%), Positives = 18/26 (69%)

Query:     3 IAIGLDFGSDSVRALAVDCASGEEIA 28
             + + LD G+ +VRA+AV+   G+ +A
Sbjct:    15 VILVLDCGATNVRAIAVN-RQGKIVA 39


 >gi|2493485|sp|P77432|YDEV_ECOLI  HYPOTHETICAL SUGAR KINASE IN HIPB-UXAB
            INTERGENIC REGION >gi|1742480|dbj|BAA15191| (D90793) Xylulose
            kinase (EC 2.7.1.17) (Xylulokinase). [Escherichia coli]
            >gi|1742488|dbj|BAA15198| (D90794) Xylulose kinase (EC 2.7.1.17)
            (Xylulokinase). [Escherichia coli] >gi|1787789 (AE000248) putative
            kinase [Escherichia coli]
            Length = 530

Local hits (HSPs):       ___          _________________                   
Annotated Domains:                ________________             _____      
                        __________________________________________________
Database sequence:     |              |             |             |       | 530
                       0            150           300           450
__________________

Annotated Domains:
   PFAM                 FGGY: FGGY family of carbohydrate kinase 113..271
   PFAM                 FGGY: FGGY family of carbohydrate kinase 416..461
__________________


 Score = 75 (26.4 bits), Expect = 9.3, Sum P(2) = 1.0
 Identities = 44/187 (23%), Positives = 76/187 (40%)

Query:   159 KILHVTRQDSAVAQSAASWIELCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLP 218
             ++L +    S + + A++   + DW+  +LSG         G  + G   L    W    
Sbjct:   150 RLLWLAHHRSDIYRQASTITMISDWLAYMLSGELAVDPSNAG--TTGLLDLTTRDW---K 204

Query:   219 PASFFDELDPILNRHLPSPLFTDTWTADIPVGTLCPEWAQRLGLPES--VVISGGAFDCH 276
             PA   D     L   + SP+  +T T    +G +  + A+  GL     VV+ GG  D  
Sbjct:   205 PA-LLDMAG--LRADILSPV-KETGTL---LGVVSSQAAELCGLKAGTPVVVGGG--DVQ 255

Query:   277 MGAVGAGAQPNALVKVIGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQS 336
             +G +G G    A   V+G +    ++     V +  +     +V+  V+PG +  E+   
Sbjct:   256 LGCLGLGVVRPAQTAVLGGTFWQQVVNLAAPVTDPEMNV---RVNPHVIPGMVQAESISF 312

Query:   337 AFGDIYAWF 345
               G    WF
Sbjct:   313 FTGLTMRWF 321

 Score = 49 (17.2 bits), Expect = 9.3, Sum P(2) = 1.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query:     5 IGLDFGSDSVRALAVDCASGEEIATS-VEW 33
             + LD G+ S+RA+  D   G +IA    EW
Sbjct:    15 MALDAGTGSIRAVIFDL-EGNQIAVGQAEW 43


Parameters:
  filter=seg+xnu
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.433    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +0      0      490       466       10.  80 3  11 22  0.19    34
                                                    35  0.22    37


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  11:29 PM CDT Oct 9, 1999
    Format:  BLAST
  # of letters in database:  127,702,997
  # of sequences in database:  416,691
  # of database sequences satisfying E:  38
  No. of states in DFA:  582 (57 KB)
  Total size of DFA:  193 KB (256 KB)
  Time to generate neighborhood:  0.03u 0.01s 0.04t  Elapsed: 00:00:00
  No. of threads or processors used:  4
  Search cpu time:  156.62u 0.93s 157.55t  Elapsed: 00:00:48
  Total cpu time:  156.74u 1.03s 157.77t  Elapsed: 00:00:48
  Start:  Tue Oct 12 13:38:42 1999   End:  Tue Oct 12 13:39:30 1999
  Annotated Domains Database:   March 18, 1999
    Release Date:  December 22, 1998