Running WU-BLAST-X 2.0

BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.

BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.

BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract

Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract

Repeat sequence:
   SW  perc perc perc  query     position in query    matching     repeat       position in  repeat
score  div. del. ins.  sequence  begin  end (left)    repeat       class/family begin  end (left)

  229  26.8  0.0  0.0  ECOPGSA     789  844  (112) +  tRNA-Lys-AAG tRNA             8   63   (13)  

Alignments:
 229 26.79 0.00 0.00  ECOPGSA      789   844 (112)    tRNA-Lys-AAG#tRNA        8    63 (13)  

  ECOPGSA            789 TAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCG 838
                                  i         i  vvi vii  vv  i      i i     
  tRNA-Lys-AAG#tR      8 TAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 57

  ECOPGSA            839 AGTCTC 844
                           i i 
  tRNA-Lys-AAG#tR     58 AGCCCC 63

Transitions / transversions = 2.00 (10 / 5)
Gap_init rate = 0.00 (0 / 56), avg. gap size = 0.00 (0 / 0)  

Masked Sequence:
>ECOPGSA
GATCTTCTGGTCGTTGAAACATTGATGTCTCTGTAGCAACATAGGGGTAA
TCTTACTGACAACAGATAGTTACCCGTCATTATGCAATTTAATATCCCTA
CGTTGCTTACACTGTTCCGTGTCATCCTTATCCCATTCTTTGTATTGGTC
TTTTATCTGCCTGTCACCTGGTCGCCGTTTGCCGCCGCGCTCATTTTCTG
CGTCGCGGCGGTGACTGACTGGTTCGATGGTTTTCTGGCACGCCGCTGGA
ACCAGAGTACCCGGTTTGGTGCTTTCCTTGACCCTGTGGCAGATAAAGTT
CTCGTGGCTATCGCCATGGTGCTGGTAACCGAGCATTATCACAGCTGGTG
GGTGACATTACCGGCGGCAACGATGATCGCCCGTGAAATTATTATTTCTG
CGCTACGCGAATGGATGGCGGAGTTGGGTAAACGCAGTAGCGTGGCCGTC
TCCTGGATTGGGAAAGTGAAAACCACTGCCCAGATGGTGGCGTTGGCATG
GCTGCTGTGGCGTCCGAACATTTGGGTTGAGTACGCCGGTATTGCACTTT
TCTTTGTGGCTGCGGTACTGACTCTGTGGTCAATGTTGCAATATTTGAGC
GCTGCGCGTGCAGATTTGCTTGATCAGTGATCGTTTCGGCGTAATTTTCA
GCAAACGATCAAAAGTGGTGAAAAATATCGTTGACTCATCGCGCCAGGTA
AGTAGAATGCAACGCATCGAACGGCGGCACTGATTGCCAGACGATAATAA
AATCAAGTGATTAACTGATTGCTTGATGAATGCGGGAANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTCC
CGCTCCAGTTTAAAAGACATCGGCGTCAAGCGGATGTCTGGCTGAAAGGC
CTGAAGAATTTGGCGCGTTAACAAAGCGGTTATGTAGCGGATTGCAAATC
CGTCTA

Summary:
==================================================
file name: /repeatmasker/tmp/RM2seq
sequences:          1
total length:     956 bp
GC level:       49.90 %
bases masked       56 bp (  5.86 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
SINEs:               0           0 bp     0.00 %
      ALUs           0           0 bp     0.00 %
      MIRs           0           0 bp     0.00 %

LINEs:               0           0 bp     0.00 %
      LINE1          0           0 bp     0.00 %
      LINE2          0           0 bp     0.00 %

LTR elements:        0           0 bp     0.00 %
      MaLRs          0           0 bp     0.00 %
      Retrov.        0           0 bp     0.00 %
      MER4_group     0           0 bp     0.00 %

DNA elements:        0           0 bp     0.00 %
      MER1_type      0           0 bp     0.00 %
      MER2_type      0           0 bp     0.00 %
      Mariners       0           0 bp     0.00 %

Unclassified:        0           0 bp     0.00 %

Total interspersed repeats:      0 bp     0.00 %


Small RNA:           1          56 bp     5.86 %

Satellites:          0           0 bp     0.00 %
Simple repeats:      0           0 bp     0.00 %
Low complexity:      0           0 bp     0.00 %
==================================================

* most repeats fragmented by insertions or deletions
  have been counted as one element

The sequence(s) were assumed to be of primate origin.
RepeatMasker version  05/05/99               default
ProcessRepeats version  05/05/99
Repbase version 3.04


Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.

Query=  ECOPGSA
        (956 letters)
  Translating both strands of query sequence in all 6 reading frames

Database:  nr
           416,691 sequences; 127,702,997 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 6 Sequences     : less than 6 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 1187 321 |=====================================================
   6310  866 184 |==============================
   3980  682  90 |===============
   2510  592 165 |===========================
   1580  427  83 |=============
   1000  344  95 |===============
    631  249  60 |==========
    398  189  33 |=====
    251  156  30 |=====
    158  126  24 |====
    100  102  14 |==
   63.1   88   9 |=
   39.8   79   5 |:
   25.1   74   4 |:
   15.8   70   6 |=
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 64  <<<<<<<<<<<<<<<<<
   10.0   64   1 |:
   6.31   63   0 |
   3.98   63   0 |
   2.51   63   2 |:
   1.58   61   2 |:
   1.00   59   2 |:
   0.63   57   2 |:
   0.40   55   3 |:
   0.25   52   3 |:
   0.16   49   5 |:
   0.10   44   0 |
  0.063   44   1 |:
  0.040   43   1 |:
  0.025   42   2 |:
  0.016   40   0 |
  0.010   40   1 |:
 0.0063   39   0 |
 0.0040   39   2 |:
 0.0025   37   2 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|548498|sp|P06978|PGSA_ECOLICDP-DIACYLGLYCEROL--GLY... +1   945  3.6e-94   1
gi|1736571|dbj|BAA15732|(D90832) CDP-diacylglycerol--... +1   940  1.2e-93   1
gi|67154|pir||XNECPGCDPdiacylglycerol--glycerol-3-pho... +1   916  4.3e-91   1
gi|1172466|sp|P44528|PGSA_HAEINCDP-DIACYLGLYCEROL--GL... +1   662  3.5e-64   1
gi|1172467|sp|P45419|PGSA_PSEFLCDP-DIACYLGLYCEROL--GL... +1   493  2.9e-46   1
gi|3402692(AC004697) putative CDP-diacylglycerol--gly... +1   341  3.7e-30   1
gi|973305(U29587) phosphatidylglycerol phosphate synt... +1   303  2.8e-29   2
gi|3860619|emb|CAA14520|(AJ235270) CDP-DIACYLGLYCEROL... +1   278  1.7e-23   1
gi|3426367(AF082738) phosphotidylglycerophosphate syn... +1   272  7.5e-23   1
gi|1172465|sp|P46322|PGSA_BACSUCDP-DIACYLGLYCEROL--GL... +1   263  6.7e-22   1
gi|2634064|emb|CAB13565|(Z99112) phosphatidylglycerop... +1   255  4.8e-21   1
gi|1653554|dbj|BAA18467|(D90914) CDP-diacylglycerol-g... +1   253  7.7e-21   1
gi|2624268|emb|CAA15542|(AL008967) pgsA3 [Mycobacteri... +1   246  4.3e-20   1
gi|2145819|pir||S72934CDPdiacylglycerol--glycerol-3-p... +1   236  4.9e-19   1
gi|2314161|gb|AAD08061.1|(AE000610) phosphatidylglyce... +1   213  1.3e-16   1
gi|4154944(AE001475) PHOSPHATIDYLGLYCEROPHOSPHATE SYN... +1   212  1.7e-16   1
gi|3294241|emb|CAA19854|(AL031031) phosphatidylglycer... +1   208  4.5e-16   1
gi|4982446|gb|AAD36923.1|AE001823_5(AE001823) CDP-dia... +1   198  5.2e-15   1
gi|2578385|emb|CAA15476.1|(AL008609) phosphatidyltran... +1   190  4.4e-14   1
gi|2493569|sp|Q50611|PGSA_MYCTUPUTATIVE CDP-DIACYLGLY... +1   184  2.3e-13   1
gi|1346707|sp|P47360|PGSA_MYCGECDP-DIACYLGLYCEROL--GL... +1   183  3.0e-13   1
gi|3329263(AE001352) CDP-diacylglycerol--glycerol-3-p... +1   168  1.7e-11   1
gi|2983468(AE000715) phosphotidylglycerophosphate syn... +1   171  5.5e-10   1
gi|629284|pir||S48580hypothetical protein - Mycoplasm... +1   154  6.4e-10   1
gi|2984346(AE000775) phosphotidylglycerophosphate syn... +1   150  1.8e-09   1
gi|2493568|sp|P75520|PGSA_MYCPNCDP-DIACYLGLYCEROL--GL... +1   153  1.6e-08   1
gi|5834570|emb|CAB55278.1|(AL035461) dJ967N21.6 (nove... +1   152  1.0e-07   1
gi|4377271|gb|AAD19085|(AE001674) Glycerol-3-P Phosph... +1   139  5.2e-07   1
gi|2132442|pir||S67689probable membrane protein YDL14... +1   137  4.9e-06   1
gi|2983870(AE000742) putative protein [Aquifex aeolicus] +1   128  1.1e-05   1
gi|2995615(U95744) phosphatidylglycerophosphate synth... +1   126  3.8e-05   1
gi|2088865(AF003389) No definition line found [Caenor... +1   127  4.8e-05   1
gi|2414601|emb|CAB16578|(Z99295) phosphatidyl synthas... +1   132  7.2e-05   1
gi|3328933(AE001323) CDP-diacylglycerol--glycerol-3-p... +1   115  0.00017   1
gi|1620879|dbj|BAA11634|(D82928) phosphatidylinositol... +1   119  0.00026   1
gi|1723230|sp|Q10153|YAT8_SCHPOHYPOTHETICAL 28.5 KD P... +1   113  0.0022    1
gi|5453906ref|NP_006310.1|pPIS| phosphatidylinositol ... +1   111  0.0024    1
gi|3367632|emb|CAA04172|(AJ000539) phosphatidylinosit... +1   111  0.0029    1
gi|4376912|gb|AAD18754|(AE001646) Glycerol-3-P Phosph... +1   106  0.0032    1
gi|4115948|gb|AAD03458.1|(AF118223) contains similari... +1   110  0.0069    1
gi|4467144|emb|CAB37513|(AL035540) putative phosphati... +1   104  0.019     1
gi|4154884(AE001471) PHOSPHATIDYLSERINE SYNTHASE [Hel... +1   104  0.021     1
gi|1477770(U59625) Helicobacter pylori copper transpo... +1   103  0.028     1
gi|2983686(AE000730) putative protein [Aquifex aeolicus] +1    99  0.055     1
gi|2493570|sp|Q48269|PSS_HELPYCDP-DIACYLGLYCEROL--SER... +1    98  0.10      1
gi|5105201|dbj|BAA80515.1|(AP000061) 223aa long hypot... +1    97  0.11      1
gi|2648809(AE000982) CDP-diacylglycerol--glycerol-3-p... +1    94  0.12      1
gi|2688662(AE001172) CDP-diacylglycerol--glycerol-3-p... +1    96  0.12      1
gi|130240|sp|P06197|PIS_YEASTCDP-DIACYLGLYCEROL--INOS... +1    96  0.14      1
gi|2983786(AE000737) glucose-1-phosphate thymidylyltr... +1   100  0.16      1

Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

WARNING:  Descriptions of 14 database sequences were not reported due to the
          limiting value of parameter V = 50.



 >gi|548498|sp|P06978|PGSA_ECOLI  CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE
            3-PHOSPHATIDYLTRANSFERASE (PHOSPHATIDYLGLYCEROPHOSPHATE SYNTHASE)
            (PGP SYNTHASE) >gi|473749 (M12299) phosphatidylglycerophosphate
            synthase [Escherichia coli] >gi|1788220 (AE000284)
            phosphatidylglycerophosphate synthetase =
            CDP-1,2-diacyl-sn-glycero-3-phosphate phosphatidyl transferase
            [Escherichia coli]
            Length = 182

Frame  1 hits (HSPs):   __________________________________________________
Annotated Domains:      _  ______________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |            |         | 182
                       0            50           100          150
__________________

Annotated Domains:
   Entrez               pyrrolidone-carboxylic-acid site         2
   Entrez               Transmembrane region                     14..38
   Entrez               Transmembrane region                     62..82
   Entrez               Transmembrane region                     88..108
   Entrez               Transmembrane region                     147..169
   PFAM                 CDP-OH_P_transf: CDP-alcohol phosphatidy 35..177
   BLOCKS               BL00379: CDP-alcohol phosphatidyltransfe 45..81
   PROSITE              CDP_ALCOHOL_P_TRANSF: CDP-alcohol phosph 49..71
__________________


  Plus Strand HSPs:

 Score = 945 (332.7 bits), Expect = 3.6e-94, P = 3.6e-94
 Identities = 182/182 (100%), Positives = 182/182 (100%), Frame = +1

Query:    82 MQFNIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQST 261
             MQFNIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQST
Sbjct:     1 MQFNIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQST 60

Query:   262 RFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAELGKRSS 441
             RFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAELGKRSS
Sbjct:    61 RFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAELGKRSS 120

Query:   442 VAVSWIGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVAAVLTLWSMLQYLSAARADLL 621
             VAVSWIGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVAAVLTLWSMLQYLSAARADLL
Sbjct:   121 VAVSWIGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVAAVLTLWSMLQYLSAARADLL 180

Query:   622 DQ 627
             DQ
Sbjct:   181 DQ 182


 >gi|1736571|dbj|BAA15732|  (D90832) CDP-diacylglycerol--glycerol-3-phosphate
            3-phosphatidyltransferase (EC 2.7.8.5)
            (Phosphatidylglycerophosphate synthase) (PGP synthase).
            [Escherichia coli]
            Length = 181

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |             |             |             |        | 181
                       0            50           100           150

  Plus Strand HSPs:

 Score = 940 (330.9 bits), Expect = 1.2e-93, P = 1.2e-93
 Identities = 181/181 (100%), Positives = 181/181 (100%), Frame = +1

Query:    85 QFNIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQSTR 264
             QFNIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQSTR
Sbjct:     1 QFNIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQSTR 60

Query:   265 FGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAELGKRSSV 444
             FGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAELGKRSSV
Sbjct:    61 FGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAELGKRSSV 120

Query:   445 AVSWIGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVAAVLTLWSMLQYLSAARADLLD 624
             AVSWIGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVAAVLTLWSMLQYLSAARADLLD
Sbjct:   121 AVSWIGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVAAVLTLWSMLQYLSAARADLLD 180

Query:   625 Q 627
             Q
Sbjct:   181 Q 181


 >gi|67154|pir||XNECPG  CDPdiacylglycerol--glycerol-3-phosphate
            3-phosphatidyltransferase (EC 2.7.8.5) - Escherichia coli
            Length = 216

Frame  2 hits (HSPs):                             ________________________
Frame  1 hits (HSPs):   _________________________________________         
Annotated Domains:                 ______                                 
                        __________________________________________________
Database sequence:     |           |          |           |           |   | 216
                       0          50        100         150         200
__________________

Annotated Domains:
   PROSITE              CDP_ALCOHOL_P_TRANSF: CDP-alcohol phosph 49..71
__________________


  Plus Strand HSPs:

 Score = 916 (322.4 bits), Expect = 4.3e-91, P = 4.3e-91
 Identities = 176/176 (100%), Positives = 176/176 (100%), Frame = +1

Query:    82 MQFNIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQST 261
             MQFNIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQST
Sbjct:     1 MQFNIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQST 60

Query:   262 RFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAELGKRSS 441
             RFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAELGKRSS
Sbjct:    61 RFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAELGKRSS 120

Query:   442 VAVSWIGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVAAVLTLWSMLQYLSAAR 609
             VAVSWIGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVAAVLTLWSMLQYLSAAR
Sbjct:   121 VAVSWIGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVAAVLTLWSMLQYLSAAR 176

 Score = 198 (69.7 bits), Expect = 5.2e-15, P = 5.2e-15
 Identities = 61/106 (57%), Positives = 72/106 (67%), Frame = +2

Query:   413 GWRSWVNAVAWPSPGLGK*KPLPR-----W--WR---WHGCCGVRTFGLSTPVLHFSLWL 562
             G RS V AV+W    +GK K   +     W  WR   W    G+  F ++  +  +S+ L
Sbjct:   116 GKRSSV-AVSW----IGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVAAVLTLWSM-L 169

Query:   563 RY*LCGQCCNI*ALRVQICLISDRFGVIFSKRSKVVKNIVDSSRQVSRMQRIERRH 730
             +Y        + A R QICLISDRFGVIFSKRSKVVKNIVDSSRQVSRMQRIERRH
Sbjct:   170 QY--------LSAAR-QICLISDRFGVIFSKRSKVVKNIVDSSRQVSRMQRIERRH 216


 >gi|1172466|sp|P44528|PGSA_HAEIN  CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE
            3-PHOSPHATIDYLTRANSFERASE (PHOSPHATIDYLGLYCEROPHOSPHATE SYNTHASE)
            (PGP SYNTHASE) >gi|1075138|pir||F64049 phosphatidylglycerophosphate
            synthase (pgsA) homolog - Haemophilus influenzae (strain Rd KW20)
            >gi|1573078 (U32698) phosphatidylglycerophosphate synthase (pgsA)
            [Haemophilus influenzae Rd]
            Length = 185

Frame  1 hits (HSPs):   _________________________________________________ 
Annotated Domains:       ______ ________________________________________  
                        __________________________________________________
Database sequence:     |             |            |             |         | 185
                       0            50          100           150
__________________

Annotated Domains:
   Entrez               Transmembrane region                     7..26
   Entrez               Transmembrane region                     33..52
   Entrez               Transmembrane region                     89..108
   Entrez               Transmembrane region                     151..172
   PFAM                 CDP-OH_P_transf: CDP-alcohol phosphatidy 36..178
   BLOCKS               BL00379: CDP-alcohol phosphatidyltransfe 46..82
   PROSITE              CDP_ALCOHOL_P_TRANSF: CDP-alcohol phosph 49..71
__________________


  Plus Strand HSPs:

 Score = 662 (233.0 bits), Expect = 3.5e-64, P = 3.5e-64
 Identities = 121/181 (66%), Positives = 148/181 (81%), Frame = +1

Query:    82 MQFNIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQST 261
             M+FNIP  LT+FRVILIPFFV+ FYLP+  SPF   LIF +A VTDW DG+LAR+W Q+T
Sbjct:     1 MKFNIPIFLTIFRVILIPFFVIAFYLPIESSPFITTLIFFIAGVTDWLDGYLARKWKQTT 60

Query:   262 RFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAELGKRSS 441
             RFGAFLDPVADKV+V  A+VL+ EH H++W+T+PA  MI+REIIISALREWMAELG+RS 
Sbjct:    61 RFGAFLDPVADKVMVVAALVLIVEHQHTFWITIPAIIMISREIIISALREWMAELGERSK 120

Query:   442 VAVSWIGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVAAVLTLWSMLQYLSAARADLL 621
             +AVSW GK KTTAQM+AL  LLWR N ++E A I L ++AA+LT+WSM+QYL  A+  LL
Sbjct:   121 IAVSWWGKWKTTAQMLALGGLLWRYNNYMEIAAIILLYIAAILTIWSMIQYLQVAKGSLL 180

Query:   622 D 624
             D
Sbjct:   181 D 181


 >gi|1172467|sp|P45419|PGSA_PSEFL  CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE
            3-PHOSPHATIDYLTRANSFERASE (PHOSPHATIDYLGLYCEROPHOSPHATE SYNTHASE)
            (PGP SYNTHASE) >gi|472401 (L29642) phosphatidylglycerophosphate
            synthase [Pseudomonas fluorescens]
            Length = 195

Frame  1 hits (HSPs):   _____________________________________________     
                        __________________________________________________
Database sequence:     |            |            |            |           | 195
                       0           50          100          150

  Plus Strand HSPs:

 Score = 493 (173.5 bits), Expect = 2.9e-46, P = 2.9e-46
 Identities = 100/175 (57%), Positives = 125/175 (71%), Frame = +1

Query:    91 NIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQSTRFG 270
             NIP L+T+ RV+LIP F+L+FYLP  WS  AA+ +F  AA TDW DG+LARR  QST FG
Sbjct:     2 NIPNLITVLRVLLIPIFILLFYLPYNWSYMAASSVFAFAAATDWLDGYLARRLEQSTPFG 61

Query:   271 AFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAELGKR--SSV 444
             AFLDPVADK++VA+A+VL+ + + + W+TLPAA +I REI++SALREWMAELG+      
Sbjct:    62 AFLDPVADKLMVAVALVLLVQEHGNLWLTLPAAVIIGREIVVSALREWMAELGRTRPGGR 121

Query:   445 AVSWIGKVKTTAQMVALAWLLWRP---NIWVEYAGIALFFVAAVLTLWSMLQYLSAA 606
               +W  + KT AQM+AL  LL  P     WV   G A   +A  LTLWSMLQYL AA
Sbjct:   122 CPTWANR-KTAAQMLALVILLANPPAFTFWV-LLGYAFLLIAGGLTLWSMLQYLRAA 176


 >gi|3402692  (AC004697) putative CDP-diacylglycerol--glycerol-3-phosphate
            3-phosphatidyltransferase [Arabidopsis thaliana]
            Length = 296

Frame  1 hits (HSPs):                    ________________________________ 
                        __________________________________________________
Database sequence:     |        |       |        |       |        |       | 296
                       0       50     100      150     200      250

  Plus Strand HSPs:

 Score = 341 (120.0 bits), Expect = 3.7e-30, P = 3.7e-30
 Identities = 78/181 (43%), Positives = 111/181 (61%), Frame = +1

Query:    94 IPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQSTRFGA 273
             +PT+LTL RV  +P  V  FY+   W   A   IF  AA+TDW DG+LAR+    + FGA
Sbjct:   107 LPTVLTLGRVAAVPLLVATFYVDSWWGTTATTSIFIAAAITDWLDGYLARKMRLGSAFGA 166

Query:   274 FLDPVADKVLVAIAMVLV-TEHYH-------SWWVTLPAATMIAREIIISALREWMA-EL 426
             FLDPVADK++VA  ++L+ T+           W +T+P+  +I REI +SA+REW A + 
Sbjct:   167 FLDPVADKLMVAATLILLCTKPIQVAELGPLPWLLTVPSIAIIGREITMSAVREWAASQN 226

Query:   427 GKR-SSVAVSWIGKVKTTAQMVALAWLLWR--PNI-WVEYAGIALFFVAAVLTLWSMLQY 594
             GK   +VAV+ +GK KT  QM AL  LL     N+ W+  +G  L +V+A L++WS+  Y
Sbjct:   227 GKLLEAVAVNNLGKWKTATQMTALTILLASRDSNVGWLVASGAGLLYVSAGLSVWSLAVY 286

Query:   595 L 597
             +
Sbjct:   287 M 287


 >gi|973305  (U29587) phosphatidylglycerol phosphate synthase [Rhodobacter
           sphaeroides] >gi|1587295|prf||2206391A phosphatidylglycerophosphate
           synthase [Rhodobacter sphaeroides]
           Length = 227

Frame  1 hits (HSPs):    ________________________________         ________
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 227
                       0         50        100        150        200

  Plus Strand HSPs:

 Score = 303 (106.7 bits), Expect = 2.8e-29, Sum P(2) = 2.8e-29
 Identities = 62/141 (43%), Positives = 96/141 (68%), Frame = +1

Query:    82 MQFNIPTLLTLFRVILIPFFVLVF-YLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQS 258
             M ++IP +LT+ R++  P   ++F Y    W+ + A  +F +AAVTD+FDG+LAR W Q 
Sbjct:     7 MNWSIPNILTVLRLLAAPGVAVMFLYFHRPWADWFALTLFILAAVTDFFDGYLARLWKQE 66

Query:   259 TRFGAFLDPVADKVLVAIAMVLVTEHYH-SWWVTLPAATMIAREIIISALREWMAELGKR 435
             ++FGA LDP+ADK +V IA+V++T +   + W+ LP   ++ RE+ +S LRE++    K 
Sbjct:    67 SKFGAMLDPIADKAMVVIALVIITGYSGMNPWLILPVTLILFREVFVSGLREFLG--AKA 124

Query:   436 SSVAVSWIGKVKTTAQMVALAWL 504
             S + V+ + K KTTAQMVA+A L
Sbjct:   125 SLLKVTKLAKWKTTAQMVAIAIL 147

 Score = 45 (15.8 bits), Expect = 2.8e-29, Sum P(2) = 2.8e-29
 Identities = 11/35 (31%), Positives = 18/35 (51%), Frame = +1

Query:   523 WVEYAGIALFFVAAVLTLWSMLQYLSAARADLLDQ 627
             +  + G+AL ++AA LT  +   Y   A   L D+
Sbjct:   192 YATWLGLALIWIAAALTFITGWDYFRKALPYLKDE 226


 >gi|3860619|emb|CAA14520|  (AJ235270) CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE
            3-PHOSPHATIDYLTRANSFERASE (pgsA) [Rickettsia prowazekii]
            Length = 181

Frame  1 hits (HSPs):    ________________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 181
                       0            50           100           150

  Plus Strand HSPs:

 Score = 278 (97.9 bits), Expect = 1.7e-23, P = 1.7e-23
 Identities = 61/173 (35%), Positives = 109/173 (63%), Frame = +1

Query:    91 NIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQSTRFG 270
             N+P  LT+ R+++IP  +L+FY+  + +    AL+F +A++TD+FDG++AR++N  T FG
Sbjct:     6 NLPNYLTIARIMVIPVIILLFYINNSLARKLGALLFVLASITDFFDGYIARKYNLVTSFG 65

Query:   271 AFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAELGKRSSVAV 450
                DP+ADK+LV    +++ +  +     +P   ++ARE ++S LRE++A +  + SV V
Sbjct:    66 KMFDPIADKLLVGCVTIMLLKKDNV--DEIPCLLILAREFLVSGLREFLALV--KVSVPV 121

Query:   451 SWIGKVKTTAQMVALAWLLWRPN----IWVEYAGIALFFVAAVLTLWSMLQYLSAAR 609
             S + K+KT  QM AL+ L+        I+++  G  + ++AA LT+ +   Y  A +
Sbjct:   122 SRLAKLKTFLQMFALSILILGSKGSGIIYLDIVGEIILWIAAFLTIITGYSYFKACK 178


 >gi|3426367  (AF082738) phosphotidylglycerophosphate synthase [Streptococcus
            pyogenes]
            Length = 165

Frame  1 hits (HSPs):   ____________________________________________      
                        __________________________________________________
Database sequence:     |              |               |              |    | 165
                       0             50             100            150

  Plus Strand HSPs:

 Score = 272 (95.7 bits), Expect = 7.5e-23, P = 7.5e-23
 Identities = 62/145 (42%), Positives = 93/145 (64%), Frame = +1

Query:    76 VIMQFNIPTLLTLFRVILIPFFVLVFYLP--VTWSPFAAALIFCVAAVTDWFDGFLARRW 249
             +I + NIP LLTL R+ +IPFF+ +      V W  FAA +IF +A+ TD+ DG+LAR+W
Sbjct:     1 MIKKENIPNLLTLVRIAMIPFFLFITSSSNKVGWHIFAA-VIFAIASFTDYLDGYLARKW 59

Query:   250 NQSTRFGAFLDPVADKVLVAIAMV-LVTEHYHSWWVTLPAATMIAREIIISALREWMAEL 426
             +  + FG F DP+ADK+LV  A + LV       WV+   A +I RE+ ++ LR  + E 
Sbjct:    60 HVVSNFGKFADPLADKMLVMSAFIMLVGLGLVPAWVS---AVIICRELAVTGLRLLLVET 116

Query:   427 GKRSSVAVSWIGKVKTTAQMVALAWLLW 510
             G +  +A + +GK+KT  QM+++  LLW
Sbjct:   117 GGKV-LAAAMLGKIKTATQMLSIILLLW 143


 >gi|1172465|sp|P46322|PGSA_BACSU  CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE
            3-PHOSPHATIDYLTRANSFERASE (PHOSPHATIDYLGLYCEROPHOSPHATE SYNTHASE)
            (PGP SYNTHASE) >gi|2127166|pir||I39950 pgsA protein - Bacillus
            subtilis >gi|893358|dbj|BAA46041| (D50064) PgsA [Bacillus subtilis]
            >gi|1842439 (U87792) phosphatidylglycerophosphate synthase
            [Bacillus subtilis]
            Length = 193

Frame  1 hits (HSPs):   ________________________________________________  
Annotated Domains:       ______  ________________________________________ 
                        __________________________________________________
Database sequence:     |            |            |            |           | 193
                       0           50          100          150
__________________

Annotated Domains:
   Entrez               Transmembrane region                     8..28
   Entrez               Transmembrane region                     39..59
   Entrez               Transmembrane region                     88..108
   Entrez               Transmembrane region                     157..177
   PFAM                 CDP-OH_P_transf: CDP-alcohol phosphatidy 47..188
   BLOCKS               BL00379: CDP-alcohol phosphatidyltransfe 57..93
   PROSITE              CDP_ALCOHOL_P_TRANSF: CDP-alcohol phosph 60..82
__________________


  Plus Strand HSPs:

 Score = 263 (92.6 bits), Expect = 6.7e-22, P = 6.7e-22
 Identities = 69/182 (37%), Positives = 110/182 (60%), Frame = +1

Query:    88 FNIPTLLTLFRVILIPFFVLVFYLPVTWS---------P---FAAALIFCVAAVTDWFDG 231
             FN+P  +TL R+ LIP F+++   P  W          P    A A++F +A+ TDW DG
Sbjct:     2 FNLPNKITLARIALIPIFMIIMLAPFDWGRLEVGDESIPVAHLAGAILFIIASTTDWVDG 61

Query:   232 FLARRWNQSTRFGAFLDPVADKVLVAIAMVLVTEH--YHSWWVTLPAATMIAREIIISAL 405
             + AR+ N  T FG FLDP+ADK+LV+ A++++ +     +W V +    +I+RE  ++ L
Sbjct:    62 YYARKLNLVTNFGKFLDPLADKLLVSAALIILVQFDLAPAWMVIV----IISREFAVTGL 117

Query:   406 REWMAELGKRSSVAVSWIGKVKTTAQMVALAWLLWRPNIWVE-----YAGIALFFVAAVL 570
             R  +A  G+   VA + +GK+KT AQ++A++ LL   N+  E     +A +AL+ VA   
Sbjct:   118 RLVLAGTGE--VVAANMLGKIKTWAQIIAVSALLLH-NLPFELVSFPFADLALW-VAVFF 173

Query:   571 TLWSMLQYLS 600
             T+ S  +Y S
Sbjct:   174 TVVSGWEYFS 183


 >gi|2634064|emb|CAB13565|  (Z99112) phosphatidylglycerophosphate synthase
            [Bacillus subtilis]
            Length = 193

Frame  1 hits (HSPs):   ________________________________________________  
                        __________________________________________________
Database sequence:     |            |            |            |           | 193
                       0           50          100          150

  Plus Strand HSPs:

 Score = 255 (89.8 bits), Expect = 4.8e-21, P = 4.8e-21
 Identities = 68/181 (37%), Positives = 108/181 (59%), Frame = +1

Query:    91 NIPTLLTLFRVILIPFFVLVFYLPVTWS---------PFA---AALIFCVAAVTDWFDGF 234
             N+P  +TL R+ LIP F+++   P  W          P A     ++F +A+ TDW DGF
Sbjct:     3 NLPNKITLARIALIPIFMIIMLAPFDWGRLEVGDESIPVAHLEGGILFIIASTTDWVDGF 62

Query:   235 LARRWNQSTRFGAFLDPVADKVLVAIAMVLVTEH--YHSWWVTLPAATMIAREIIISALR 408
              AR+ N  T FG FLDP+ADK+LV+ A++++ +     +W V +    +I+RE  ++ LR
Sbjct:    63 YARKLNLVTNFGKFLDPLADKLLVSAALIILVQFDLAPAWMVIV----IISREFAVTGLR 118

Query:   409 EWMAELGKRSSVAVSWIGKVKTTAQMVALAWLLWRPNIWVE-----YAGIALFFVAAVLT 573
               +A  G+   VA + +GK+KT AQ++A++ LL   N+  E     +A +AL+ VA   T
Sbjct:   119 LVLAGTGE--VVAANMLGKIKTWAQIIAVSALLLH-NLPFELVSFPFADLALW-VAVFFT 174

Query:   574 LWSMLQYLS 600
             + S  +Y S
Sbjct:   175 VVSGWEYFS 183


 >gi|1653554|dbj|BAA18467|  (D90914) CDP-diacylglycerol-glycerol-3-phosphate
            3-phosphatidyltransferase [Synechocystis sp.]
            Length = 179

Frame  1 hits (HSPs):   _______________________________________________   
                        __________________________________________________
Database sequence:     |             |             |             |        | 179
                       0            50           100           150

  Plus Strand HSPs:

 Score = 253 (89.1 bits), Expect = 7.7e-21, P = 7.7e-21
 Identities = 70/169 (41%), Positives = 101/169 (59%), Frame = +1

Query:    91 NIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQSTRFG 270
             NIP  +T+ R++ +P   L    P   + +    IF +AA TDW DG+LARR NQ T  G
Sbjct:     2 NIPNWVTVSRLLALPLLFLWLPTPEAETRWWGVGIFLLAASTDWLDGYLARRLNQVTELG 61

Query:   271 AFLDPVADKVLV-AIAMVLVTEHYHSWWVTLPAAT--MIAREIIISALREWMAELGKRSS 441
              FLDP+ DK+LV A  ++L+T     W V  P A   ++ARE++I+  R    +L  ++ 
Sbjct:    62 KFLDPLVDKLLVLAPLLILLT-----WQVVPPWAVGLILARELVIAGWRV-NPQLASQTE 115

Query:   442 VAVS--WIGKVKTTAQMVALAWLLWR-PNIWVEYAGIALFFVAAVLTLWSMLQYL 597
             +A +  W GKVKT  Q+ A+A LL   P I+ +  G  +F++A VLTL S   YL
Sbjct:   116 IAGANLW-GKVKTVTQITAIALLLAPLPEIYGQI-GTVIFWIAVVLTLISGAIYL 168


 >gi|2624268|emb|CAA15542|  (AL008967) pgsA3 [Mycobacterium tuberculosis]
            Length = 209

Frame  1 hits (HSPs):         __________________________________________  
                        __________________________________________________
Database sequence:     |           |           |           |           |  | 209
                       0          50         100         150         200

  Plus Strand HSPs:

 Score = 246 (86.6 bits), Expect = 4.3e-20, P = 4.3e-20
 Identities = 62/176 (35%), Positives = 102/176 (57%), Frame = +1

Query:    91 NIPTLLTLFRVILIPFFVL-VFYLPVTWSP--FAAALIFCVAAVTDWFDGFLARRWNQST 261
             N+  +LTL R++++P F+L +FY     S     A  IF  A +TD FDG LAR +  +T
Sbjct:    28 NLANILTLLRLVMVPVFLLALFYGGGHHSAARVVAWAIFATACITDRFDGLLARNYGMAT 87

Query:   262 RFGAFLDPVADKVLVAIAMV-LVTEHYHSWWVTLPAATMIAREIIISALREWMAELGKRS 438
              FGAF+DP+ADK L+  A++ L       WWVT+    ++ RE+ ++ LR  +A + +R 
Sbjct:    88 EFGAFVDPIADKTLIGSALIGLSMLGDLPWWVTV---LILTRELGVTVLR--LAVI-RRG 141

Query:   439 SVAVSWIGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVAAVLTLWSMLQYLSAARADL 618
              +  SW GK+KT  Q VA+   +   +  +  A + +   A +LT+ + + Y++ A  D+
Sbjct:   142 VIPASWGGKLKTFVQAVAIGLFVLPLSGPLHVAAVVVMAAAILLTVITGVDYVARALRDI 201


 >gi|2145819|pir||S72934  CDPdiacylglycerol--glycerol-3-phosphate
            3-phosphatidyltransferase (EC 2.7.8.5) pgsA - Mycobacterium leprae
            >gi|467087 (U00019) pgsA; B2235_C2_186 [Mycobacterium leprae]
            >gi|2052103|emb|CAB08118| (Z94723) PgsA [Mycobacterium leprae]
            Length = 193

Frame  1 hits (HSPs):     _____________________________________________   
Annotated Domains:                ___ _______                             
                        __________________________________________________
Database sequence:     |            |            |            |           | 193
                       0           50          100          150
__________________

Annotated Domains:
   PROSITE              CDP_ALCOHOL_P_TRANSF: CDP-alcohol phosph 57..79
   PROSITE              PROKAR_LIPOPROTEIN: Prokaryotic membrane 41..51
__________________


  Plus Strand HSPs:

 Score = 236 (83.1 bits), Expect = 4.9e-19, P = 4.9e-19
 Identities = 64/171 (37%), Positives = 101/171 (59%), Frame = +1

Query:    91 NIPTLLTLFRVILIPFFVLVFYLP---VTWSPFAAALIFCVAAVTDWFDGFLARRWNQST 261
             N+  +LT  R++L+P F++  +           AA +IF VA +TD  DG LARR+  +T
Sbjct:     9 NLANILTGLRLMLVPVFLVALFAGNGHEIVGRIAAFVIFTVACITDRLDGLLARRYGMAT 68

Query:   262 RFGAFLDPVADKVLVAIAMV-LVTEHYHSWWVTLPAATMIAREIIISALREWMAELGKRS 438
              FGAF+DP+ADK L+  A++ L       WWVT+    ++ RE+ ++ LR  +A +  R 
Sbjct:    69 EFGAFVDPIADKTLIGAALIGLSMLGDLPWWVTV---LIMTRELGVTLLR--LAVI-HRG 122

Query:   439 SVAVSWIGKVKTTAQMVALA-WLLWRPNIWVEY-AGIALFF-VAAVLTLWSMLQYLS 600
              +  SW GK+KT  Q VA+  +LL    + V +  G A+   VA VLT+ + + Y++
Sbjct:   123 VIPASWGGKLKTVVQAVAIGLFLLPLTQLSVPFHVGAAVVMAVAVVLTVVTGVDYVA 179


 >gi|2314161|gb|AAD08061.1|  (AE000610) phosphatidylglycerophosphate synthase
            (pgsA) [Helicobacter pylori 26695]
            Length = 200

Frame  1 hits (HSPs):         ___________________________________________ 
                        __________________________________________________
Database sequence:     |            |           |            |            | 200
                       0           50         100          150

  Plus Strand HSPs:

 Score = 213 (75.0 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 59/167 (35%), Positives = 99/167 (59%), Frame = +1

Query:    94 IPTLLTLFRVILIPFFVLVFYLPVTW----SPFA----AALIFCVAAVTDWFDGFLARRW 249
             +P  LT+ R++L  F + +     T+    +PF     ++L+F  AA+TD  DG++AR +
Sbjct:    28 LPNFLTILRIVLSLFLLFLLLNTRTYFSFLTPFQTNMISSLVFLFAALTDLLDGYIARSY 87

Query:   250 NQSTRFGAFLDPVADKVLVAIAMV-LV-TEHYHSWWVTLPAATMIAREIIISALREWMAE 423
                +RFG   DP+ADK+L+  A + LV  +  ++W   +P   ++ RE  IS LR   A 
Sbjct:    88 KAKSRFGEIFDPLADKILILSAFLGLVYLDRVNAW---IPFV-ILGREFFISGLRVLAAN 143

Query:   424 LGKRSSVAVSWIGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVAAVLTLWSMLQY 594
               ++  + V+ +GK KT +Q+VA+  LL   ++   YA +A   +A  LTL+S + Y
Sbjct:   144 --EKKDIPVNALGKYKTVSQVVAIGALL--ADVTYSYALVA---IAVFLTLYSGIDY 193


 >gi|4154944  (AE001475) PHOSPHATIDYLGLYCEROPHOSPHATE SYNTHASE [Helicobacter
            pylori J99]
            Length = 200

Frame  1 hits (HSPs):         ___________________________________________ 
                        __________________________________________________
Database sequence:     |            |           |            |            | 200
                       0           50         100          150

  Plus Strand HSPs:

 Score = 212 (74.6 bits), Expect = 1.7e-16, P = 1.7e-16
 Identities = 59/167 (35%), Positives = 95/167 (56%), Frame = +1

Query:    94 IPTLLTLFRVILIPFFVLVFYLPVTW----SPF----AAALIFCVAAVTDWFDGFLARRW 249
             +P  LT+ R++L  F + +     T+    +PF     ++L+F  AA+TD  DG++AR +
Sbjct:    28 LPNFLTILRIVLSLFLLFLLLNTHTYFSFLTPFHINMISSLVFLFAALTDLLDGYIARSY 87

Query:   250 NQSTRFGAFLDPVADKVLVAIAMV-LVTEHYHSWWVTLPAATMIAREIIISALREWMAEL 426
                +RFG   DP+ADK+L+  A + LV     + WV      ++ RE  IS LR   A  
Sbjct:    88 KAKSRFGEIFDPLADKILILSAFLGLVYLDRVNAWVPF---VILGREFFISGLRVLAAN- 143

Query:   427 GKRSSVAVSWIGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVAAVLTLWSMLQY 594
              ++  + V+ +GK KT +Q+VA+  LL   N+   Y  +A   +A  LTL+S + Y
Sbjct:   144 -EKKDIPVNALGKYKTVSQVVAIGALL--ANLTYSYVLVA---IAVFLTLYSGIDY 193


 >gi|3294241|emb|CAA19854|  (AL031031) phosphatidylglycerophosphate synthase
            [Streptomyces coelicolor]
            Length = 263

Frame  1 hits (HSPs):                __________________________________   
                        __________________________________________________
Database sequence:     |         |        |         |        |         |  | 263
                       0        50      100       150      200       250

  Plus Strand HSPs:

 Score = 208 (73.2 bits), Expect = 4.5e-16, P = 4.5e-16
 Identities = 62/173 (35%), Positives = 96/173 (55%), Frame = +1

Query:    88 FNIPTLLTLFRVILIPFFVLVF-----YLPVTWSPFAAALIFCVAAVTDWFDGFLARRWN 252
             +N+  LLT+ R++L+P FV +      Y P  W  FA A  F +A +TD FDG LAR +N
Sbjct:    73 WNVANLLTMLRLLLVPAFVALMLGNGGYDPA-WRSFAWAA-FAIAMITDLFDGHLARTYN 130

Query:   253 QSTRFGAFLDPVADKVLVAIAMVLVTEHYH-SWWVTLPAATMIAREIIISALREWMAELG 429
               T FG   DP+ADK ++  A++ ++      WWVT   A ++ RE+ I+ LR  +   G
Sbjct:   131 LVTDFGKIADPIADKAIMGAALICLSALGDLPWWVT---AVILGRELGITVLRFVVIRYG 187

Query:   430 KRSSVAVSWIGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVAA--VLTLWSMLQYLSA 603
                 +  S  GK+KT  Q +A+   +    +    A +  + +AA  VLT+ + L Y+  
Sbjct:   188 V---IPASRGGKLKTLIQGIAVGMYVLA--LTGPLATLRFWVMAAAVVLTVATGLDYVKQ 242

Query:   604 A 606
             A
Sbjct:   243 A 243


 >gi|4982446|gb|AAD36923.1|AE001823_5  (AE001823)
            CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
            [Thermotoga maritima]
            Length = 178

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |             |             |             |        | 178
                       0            50           100           150

  Plus Strand HSPs:

 Score = 198 (69.7 bits), Expect = 5.2e-15, P = 5.2e-15
 Identities = 65/182 (35%), Positives = 95/182 (52%), Frame = +1

Query:    79 IMQFNIPTLLTLFRVIL-IPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQ 255
             +   N+    +L R  L IP  V+ FY+   W   +  LIF  AA TD+ DGF AR+ NQ
Sbjct:     3 VSDMNLANFFSLLRAALVIP--VVWFYME-GWISLSF-LIFVFAAFTDYLDGFFARKKNQ 58

Query:   256 STRFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAELGKR 435
              T FG   D V+DK+LV    V + +    W+V +    + AR+  ++ LR   A  G  
Sbjct:    59 VTDFGKVFDQVSDKILVISTAVAMLDVLPLWYVLV----VFARDTFVNGLRILAASRG-- 112

Query:   436 SSVAVSWIGKVKTTAQMVAL-AWLLWRPNIWVEYAGIALFFVAAVLTLW--SMLQY-LSA 603
             + V   WIGK KT +Q V L A  L++   ++  A + +FFV   LT+   S + Y +  
Sbjct:   113 NVVPARWIGKAKTVSQFVVLIAAYLFKMG-FLSNA-LLMFFVVLSLTVTVISWITYTIDI 170

Query:   604 ARADLLD 624
             AR   L+
Sbjct:   171 ARITKLE 177


 >gi|2578385|emb|CAA15476.1|  (AL008609) phosphatidyltransferase [Mycobacterium
            leprae]
            Length = 206

Frame  1 hits (HSPs):     __________________________________________      
                        __________________________________________________
Database sequence:     |           |            |           |           | | 206
                       0          50          100         150         200

  Plus Strand HSPs:

 Score = 190 (66.9 bits), Expect = 4.4e-14, P = 4.4e-14
 Identities = 54/168 (32%), Positives = 88/168 (52%), Frame = +1

Query:    94 IPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQSTRFGA 273
             +P LL+  R+ LIP FV V  L V  +   A +I   + V+DW DG +AR  +Q +R G 
Sbjct:    13 VPNLLSAVRLALIPAFVYV--LLVMHADGWAVVILVFSGVSDWADGKIARLLDQYSRLGV 70

Query:   274 FLDPVADKV-LVAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAELGKRSSVAV 450
              LDP  D++ +V I +VL       WW  +    ++AR+++++A    +   G  S + V
Sbjct:    71 LLDPAVDRLYMVTIPVVLALSGIVPWWFVV---ALLARDVLLTATLPLLWSRGLLS-LPV 126

Query:   451 SWIGKVKTTAQMVALAWLL---WRPNIWVEYAGIA--LFFVAAVLT-LWSMLQYL 597
             ++IGK  T + MV   ++L   W   +W    G     F +      LW+ + Y+
Sbjct:   127 TYIGKAATFSLMVGFPFVLLGTW-DTLWSRVLGACGWAFLIWGTYAYLWAFVLYV 180


 >gi|2493569|sp|Q50611|PGSA_MYCTU  PUTATIVE
            CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYL-TRANSFERASE
            (PHOSPHATIDYLGLYCEROPHOSPHATE SYNTHASE) (PGP SYNTHASE)
            >gi|1483549|emb|CAB01479| (Z78020) pgsA2 [Mycobacterium
            tuberculosis]
            Length = 209

Frame  1 hits (HSPs):   __________________________________________        
Annotated Domains:            ________________________________________    
                        __________________________________________________
Database sequence:     |           |           |           |           |  | 209
                       0          50         100         150         200
__________________

Annotated Domains:
   Entrez               Transmembrane region                     27..47
   Entrez               Transmembrane region                     82..102
   Entrez               Transmembrane region                     126..146
   Entrez               Transmembrane region                     157..177
   PFAM                 CDP-OH_P_transf: CDP-alcohol phosphatidy 42..192
   BLOCKS               BL00379: CDP-alcohol phosphatidyltransfe 52..88
   PROSITE              CDP_ALCOHOL_P_TRANSF: CDP-alcohol phosph 55..77
__________________


  Plus Strand HSPs:

 Score = 184 (64.8 bits), Expect = 2.3e-13, P = 2.3e-13
 Identities = 55/177 (31%), Positives = 86/177 (48%), Frame = +1

Query:    73 PVIMQ---FNIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLAR 243
             PV+ Q     +P +L++ R+ LIP FV V           A L+F  + V+DW DG +AR
Sbjct:     3 PVLTQNRVLTVPNMLSVIRLALIPAFVYVVLSAHANGWGVAILVF--SGVSDWADGKIAR 60

Query:   244 RWNQSTRFGAFLDPVADKV-LVAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMA 420
               NQS+R GA LDP  D++ +V + +V        WW  L   T++ R+ +++     + 
Sbjct:    61 LLNQSSRLGALLDPAVDRLYMVTVPIVFGLSGIVPWWFVL---TLLTRDALLAGTLPLLW 117

Query:   421 ELGKRSSVAVSWIGKVKTTAQMVALAWLLWRP--NIWVEYAGIALFFVAAVLTLWSMLQY 594
               G  S++ V+++GK  T   MV    +L      +W       L        +W M  Y
Sbjct:   118 SRGL-SALPVTYVGKAATFGFMVGFPTILLGQCDPLWSH----VLLACGWAFLIWGMYAY 172

Query:   595 LSA 603
             L A
Sbjct:   173 LWA 175


 >gi|1346707|sp|P47360|PGSA_MYCGE  CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE
            3-PHOSPHATIDYLTRANSFERASE (PHOSPHATIDYLGLYCEROPHOSPHATE SYNTHASE)
            (PGP SYNTHASE) >gi|1361749|pir||F64212 phosphatidylglycerophosphate
            synthase homolog - Mycoplasma genitalium (SGC3) >gi|3844703
            (U39691) phosphatidylglycerophosphate synthase (pgsA) [Mycoplasma
            genitalium]
            Length = 236

Frame  1 hits (HSPs):              ____________________________________   
Annotated Domains:              _________________________________________ 
                        __________________________________________________
Database sequence:     |          |         |          |          |       | 236
                       0         50       100        150        200
__________________

Annotated Domains:
   Entrez               Transmembrane region                     39..59
   Entrez               Transmembrane region                     66..86
   Entrez               Transmembrane region                     120..140
   Entrez               Transmembrane region                     163..183
   Entrez               Transmembrane region                     196..216
   PFAM                 CDP-OH_P_transf: CDP-alcohol phosphatidy 78..228
   BLOCKS               BL00379: CDP-alcohol phosphatidyltransfe 88..124
   PROSITE              CDP_ALCOHOL_P_TRANSF: CDP-alcohol phosph 91..113
   PROSITE              PROKAR_LIPOPROTEIN: Prokaryotic membrane 170..180
__________________


  Plus Strand HSPs:

 Score = 183 (64.4 bits), Expect = 3.0e-13, P = 3.0e-13
 Identities = 46/165 (27%), Positives = 86/165 (52%), Frame = +1

Query:   124 ILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQSTRFGAFLDPVADKVL 303
             +L  F V    + +  S      +F  A ++D+ DG+LAR+W   + FG   DP+ADKV+
Sbjct:    57 VLANFSVGAISISLQISLLIGGFLFLTAVISDYLDGYLARKWLAVSNFGKLWDPIADKVI 116

Query:   304 V-AIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAELGKRSSVAVSWIGKVKTTA 480
             +  + + L    Y  + + +     I R++++  +R +  E  K+  +A +W+GK KT  
Sbjct:   117 INGVLIALAINGYFHFSLLI---VFIVRDLVLDGMRIYAYE--KKVVIAANWLGKWKTIM 171

Query:   481 QMVALAW--LLW---RPNIWVEYAGIAL-------FFVAAVLTLWSMLQY 594
             QMV + +   +W   +  I    +G+         +++AAV ++WS + Y
Sbjct:   172 QMVGIVFSCFVWSFKQSEIASLNSGLFFWLLTQLPYYLAAVFSIWSFIVY 221


 >gi|3329263  (AE001352) CDP-diacylglycerol--glycerol-3-phosphate
            3-phosphatidyltransferase [Chlamydia trachomatis]
            Length = 202

Frame  1 hits (HSPs):   ____________________________________              
                        __________________________________________________
Database sequence:     |            |           |           |            || 202
                       0           50         100         150          200

  Plus Strand HSPs:

 Score = 168 (59.1 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 48/146 (32%), Positives = 83/146 (56%), Frame = +1

Query:    82 MQFNIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAA-----LIFC--VAAVTDWFDGFLA 240
             M+ ++P  LT+FR+ + P F ++ YL   W   +AA     L+F   +  +TD  DG++A
Sbjct:     1 MRVSLPNFLTVFRLFITPIF-MILYLKGRWFGLSAAFLPYVLLFLLIITEITDAVDGYIA 59

Query:   241 RRWNQSTRFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATM---IAREIIISALRE 411
             R+++Q T  G  LDP+AD V   I++ L    +    V LP   +   +AR+ +IS LR 
Sbjct:    60 RKFSQVTDLGKLLDPMADSVY-RISLYLT---FTQPPVNLPLILVFIFLARDSVISTLRT 115

Query:   412 WMAELGKRSSVAVSWIGKVKTTAQMVALAWLLW 510
               A  G+  +  +S  GK+K   Q ++  ++++
Sbjct:   116 LCASRGQVLAARMS--GKLKAILQAISFFFIIF 146


 >gi|2983468  (AE000715) phosphotidylglycerophosphate synthase [Aquifex aeolicus]
            Length = 305

Frame  1 hits (HSPs):   ______________________                            
                        __________________________________________________
Database sequence:     |        |       |       |       |       |        || 305
                       0       50     100     150     200     250      300

  Plus Strand HSPs:

 Score = 171 (60.2 bits), Expect = 5.5e-10, P = 5.5e-10
 Identities = 50/134 (37%), Positives = 73/134 (54%), Frame = +1

Query:   106 LTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQSTRFGAFLDP 285
             L+ FR ILI F V+   L   +  F A  ++ V A+TDWFDG LAR+  + + FG  LDP
Sbjct:     5 LSFFR-ILITFPVVFLILEKEF--FLAFWLYLVGALTDWFDGNLARKNKRVSNFGKLLDP 61

Query:   286 VADKVLVAIAMVLVTE--HYHSWWVTLPAATMIAREIIISALREWMAELGKRSSVAVSWI 459
              ADKV V + ++ + E     + WV L    +  RE+ IS  R  M E G    +  S+ 
Sbjct:    62 YADKVFVLLPLIALVEVKKVKAIWVIL----LTFRELSISFFRSVMVEKG--IYMEASFT 115

Query:   460 GKVKTTAQMVALAWLL 507
             GK+K   +  A++ +L
Sbjct:   116 GKLKAFLEFSAISLIL 131


 >gi|629284|pir||S48580  hypothetical protein - Mycoplasma capricolum (SGC3)
            (fragment) >gi|950064|emb|CAA83697| (Z33013) phosphatidylglycerol-P
            synthase [Mycoplasma capricolum]
            Length = 107

Frame  1 hits (HSPs):   ________________________________________________  
Annotated Domains:        ____________                                    
                        __________________________________________________
Database sequence:     |        |         |        |        |         |   | 107
                       0       20        40       60       80       100
__________________

Annotated Domains:
   PROSITE              CDP_ALCOHOL_P_TRANSF: CDP-alcohol phosph 7..29
__________________


  Plus Strand HSPs:

 Score = 154 (54.2 bits), Expect = 6.4e-10, P = 6.4e-10
 Identities = 38/107 (35%), Positives = 64/107 (59%), Frame = +1

Query:   208 AVTDWFDGFLARRWNQSTRFGAFLDPVADKVLVAIAMVLVTE-HYHSWWVTLPAATMIAR 384
             ++TD+ DG++AR++N  T FG F DP+ADK+LV   ++L +       W+T+    +I R
Sbjct:     1 SLTDFLDGWIARKYNLVTNFGKFFDPIADKLLVNATLILFSSLGVLPIWMTV---VLILR 57

Query:   385 EIIISALREWMAELGKRSSVAVSWIGKVKTTAQMVALAWLLWRPNIWV 528
             +  I  +R  ++  G   +  +   GK+KTT QM+ L+ LL+  N+ V
Sbjct:    58 DTFIDFIRMILSSNGITLAAGIG--GKLKTTFQMIGLS-LLFFVNLXV 102


 >gi|2984346  (AE000775) phosphotidylglycerophosphate synthase [Aquifex aeolicus]
            Length = 178

Frame  1 hits (HSPs):   ______________________                            
                        __________________________________________________
Database sequence:     |             |             |             |        | 178
                       0            50           100           150

  Plus Strand HSPs:

 Score = 150 (52.8 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 34/80 (42%), Positives = 48/80 (60%), Frame = +1

Query:    91 NIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQSTRFG 270
             N+P LL+L R+IL P  +L F L   +      ++F   A+ D+ DGF AR+ NQSTR G
Sbjct:     2 NVPNLLSLSRLILSPL-ILYFVLEENYLSSLVLVLFL--ALMDFLDGFFARKLNQSTRMG 58

Query:   271 AFLDPVADKVLVAIAMVLVT 330
               LDP+ADKV    +++  T
Sbjct:    59 KILDPLADKVFTFFSLLSYT 78


 >gi|2493568|sp|P75520|PGSA_MYCPN  CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE
            3-PHOSPHATIDYLTRANSFERASE (PHOSPHATIDYLGLYCEROPHOSPHATE SYNTHASE)
            (PGP SYNTHASE) >gi|2146497|pir||S73905 phosphatidylglycerophosphate
            synthase pgsA - Mycoplasma pneumoniae (SGC3) (ATCC 29342)
            >gi|1674280 (AE000057) Mycoplasma pneumoniae,
            phosphatidylglycerophosphate synthase; similar to GenBank Accession
            Number F64049, from H. influenzae [Mycoplasma pneumoniae]
            Length = 227

Frame  1 hits (HSPs):                 _______________________             
Annotated Domains:            _____ _____________________________________ 
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 227
                       0         50        100        150        200
__________________

Annotated Domains:
   Entrez               Transmembrane region                     30..50
   Entrez               Transmembrane region                     58..78
   Entrez               Transmembrane region                     112..132
   Entrez               Transmembrane region                     159..179
   Entrez               Transmembrane region                     192..212
   PFAM                 CDP-OH_P_transf: CDP-alcohol phosphatidy 70..220
   BLOCKS               BL00379: CDP-alcohol phosphatidyltransfe 80..116
   PROSITE              CDP_ALCOHOL_P_TRANSF: CDP-alcohol phosph 83..105
   PROSITE              PROKAR_LIPOPROTEIN: Prokaryotic membrane 162..172
__________________


  Plus Strand HSPs:

 Score = 153 (53.9 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 34/108 (31%), Positives = 61/108 (56%), Frame = +1

Query:   172 SPFAAALIFCVAAVTDWFDGFLARRWNQSTRFGAFLDPVADKVLV-AIAMVLVTEHYHSW 348
             S F   ++F  A ++D+ DG+ AR+W   + FG   DP+ADKV++  + + LV   Y  +
Sbjct:    65 SLFIGGVLFITAVISDYLDGYWARKWRVVSNFGKLWDPLADKVIINGVLIALVAYGYFHF 124

Query:   349 WVTLPAATMIAREIIISALREWMAELGKRSSVAVSWIGKVKTTAQMVAL 495
                +    ++ R++++  LR +  E  K+  +  +  GK KTT QM+A+
Sbjct:   125 SFLI---VIVLRDLVLDGLRFYAQE--KQLIIPANQWGKWKTTWQMIAI 168


 >gi|5834570|emb|CAB55278.1|  (AL035461) dJ967N21.6 (novel CDP-alcohol
            phosphatidyltransferase family member protein) [Homo sapiens]
            Length = 301

Frame  1 hits (HSPs):                    __________________               
                        __________________________________________________
Database sequence:     |        |       |       |        |       |       || 301
                       0       50     100     150      200     250     300

  Plus Strand HSPs:

 Score = 152 (53.5 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 39/105 (37%), Positives = 67/105 (63%), Frame = +1

Query:    88 FNIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAAL-IFCVAAVTDWFDGFLARRW-NQST 261
             + IP +L++ R+ L P   ++ YL +    F  AL +F +A +TD  DGF+AR W NQ +
Sbjct:   107 WTIPNMLSMTRIGLAP---VLGYLIIE-EDFNIALGVFALAGLTDLLDGFIARNWANQRS 162

Query:   262 RFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMI-AREIIISA 402
               G+ LDP+ADK+L++I  V +T   ++  + +P   MI +R++++ A
Sbjct:   163 ALGSALDPLADKILISILYVSLT---YADLIPVPLTYMIISRDVMLIA 207


 >gi|4377271|gb|AAD19085|  (AE001674) Glycerol-3-P Phosphatydyltransferase
            [Chlamydia pneumoniae]
            Length = 206

Frame  1 hits (HSPs):   ___________________________________               
                        __________________________________________________
Database sequence:     |           |            |           |           | | 206
                       0          50          100         150         200

  Plus Strand HSPs:

 Score = 139 (48.9 bits), Expect = 5.2e-07, P = 5.2e-07
 Identities = 44/141 (31%), Positives = 73/141 (51%), Frame = +1

Query:    94 IPTLLTLFRVILIPFFVLVFYLPVTWS-------PFAAALIFCVAAVTDWFDGFLARRWN 252
             +P  +T  R+ + P F ++ YL   W        P+    +  ++ +TD  DG++AR+++
Sbjct:     3 LPNYITFSRLFITPIF-MILYLKGKWFGITPVVLPYVLLALLAISELTDAIDGYVARKFS 61

Query:   253 QSTRFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATM---IAREIIISALREWMAE 423
             Q T  G  LDP+AD +   I++ L    +    V LP   +   +AR+ +IS LR   A 
Sbjct:    62 QVTDLGKLLDPMADSIY-RISIYLT---FTQPPVNLPLLLVFIFLARDSVISTLRTVCAF 117

Query:   424 LGKRSSVAVSWIGKVKTTAQMVALAWLL 507
              G+   VA    GK+K   Q V+   +L
Sbjct:   118 RGR--VVAARASGKLKAILQGVSFFLIL 143


 >gi|2132442|pir||S67689  probable membrane protein YDL142c - yeast
            (Saccharomyces cerevisiae) >gi|1431221|emb|CAA98715| (Z74190) ORF
            YDL142c [Saccharomyces cerevisiae]
            Length = 283

Frame  1 hits (HSPs):               ______________________                
Annotated Domains:                  ____   _____   ____                   
                        __________________________________________________
Database sequence:     |        |        |        |        |       |      | 283
                       0       50      100      150      200     250
__________________

Annotated Domains:
   Entrez               domain: transmembrane                    73..89
   Entrez               domain: transmembrane                    159..175
   PROSITE              CDP_ALCOHOL_P_TRANSF: CDP-alcohol phosph 111..133
__________________


  Plus Strand HSPs:

 Score = 137 (48.2 bits), Expect = 4.9e-06, P = 4.9e-06
 Identities = 39/122 (31%), Positives = 68/122 (55%), Frame = +1

Query:    91 NIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQSTRFG 270
             NIP +LTL R+   PF  L F +    +P  A  +F  +++TD+ DG++AR++   T  G
Sbjct:    69 NIPNILTLSRIGCTPFIGL-FIITNNLTP--ALGLFAFSSITDFMDGYIARKYGLKTIAG 125

Query:   271 AFLDPVADKVLVAIAMVLVTEHYHSWWVTLP-AATMIAREII--ISALREWMAELGKRSS 441
               LDP+ADK+L+    + ++       + +  AA ++ R+++  ISAL    + L  +  
Sbjct:   126 TILDPLADKLLMITTTLALSVPSGPQIIPVSIAAIILGRDVLLAISALFIRYSTLKLKYP 185

Query:   442 VAVSW 456
               V+W
Sbjct:   186 GRVAW 190


 >gi|2983870  (AE000742) putative protein [Aquifex aeolicus]
            Length = 196

Frame  1 hits (HSPs):         ______________________                      
                        __________________________________________________
Database sequence:     |            |            |            |           | 196
                       0           50          100          150

  Plus Strand HSPs:

 Score = 128 (45.1 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 32/88 (36%), Positives = 46/88 (52%), Frame = +1

Query:    85 QFNI-PTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQST 261
             ++N+ P L+TLF + L+       YL    +   A L+  + A+ D  DG LARR N  T
Sbjct:    25 KYNVSPNLITLFGLFLVGLGSFFLYLE---NLILAFLLLLLGALADSIDGALARRLNLKT 81

Query:   262 RFGAFLDPVADKVLVAIAMVLVTEHYHSW 348
              FGAFLD   D+   A+    +  HY S+
Sbjct:    82 EFGAFLDSTVDRFSDALPFTALGVHYASY 110


 >gi|2995615  (U95744) phosphatidylglycerophosphate synthase; TpPGS [Treponema
            pallidum] >gi|3322529 (AE001207)
            CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
            (pgsA) [Treponema pallidum]
            Length = 216

Frame  1 hits (HSPs):    ____________________________________             
                        __________________________________________________
Database sequence:     |           |          |           |           |   | 216
                       0          50        100         150         200

  Plus Strand HSPs:

 Score = 126 (44.4 bits), Expect = 3.8e-05, P = 3.8e-05
 Identities = 47/153 (30%), Positives = 75/153 (49%), Frame = +1

Query:   109 TLFRVILI-PFFVL-------VFYLPVT----WSPFAAALIFCVAAVTDWFDGFLARRWN 252
             T  R+ L+ PFF L       V Y P          A+ L+F   A TD+ DG+ AR+  
Sbjct:     8 TALRLALVLPFFALYHMSRWVVMYFPAANVGRVVSIASVLLFLFIACTDFLDGYYARKSG 67

Query:   253 QSTRFGAFLDPVADKVL-VAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAELG 429
             + + FG   DP AD +  V + + LV +++   ++ L    ++ RE  +  LR  M   G
Sbjct:    68 KYSSFGKVFDPFADVIANVTVMLCLVADNFMPVFLFL---CILYREFGMMFLR--MLACG 122

Query:   430 KRSSVAVSWIGKVKTTAQMVALAWLLWRPNIWV-EYAG 540
             +   V    +GK+KT + M A+ + L    ++  E AG
Sbjct:   123 EGHVVGAQRMGKLKTASYMGAVLFSLLLKALYAFELAG 160


 >gi|2088865  (AF003389) No definition line found [Caenorhabditis elegans]
            Length = 246

Frame  1 hits (HSPs):              ____________________                   
                        __________________________________________________
Database sequence:     |         |          |         |         |         | 246
                       0        50        100       150       200

  Plus Strand HSPs:

 Score = 127 (44.7 bits), Expect = 4.8e-05, P = 4.8e-05
 Identities = 35/101 (34%), Positives = 56/101 (55%), Frame = +1

Query:    94 IPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRW-NQSTRFG 270
             IP  +   R+   P   L+ YL V  +   A ++F VA  TD  DGF+AR    Q +  G
Sbjct:    56 IPNAICTARIAATP---LIGYLVVQHNFTPAFVLFTVAGATDLLDGFIARNVPGQKSLLG 112

Query:   271 AFLDPVADKVLVAIAMVLVTEHYHSWWVTLP-AATMIAREIII 396
             + LDPVADK+L++   + +T   ++  + LP  + +I R+I +
Sbjct:   113 SVLDPVADKLLISTMFITMT---YAGLIPLPLTSVVILRDICL 152


 >gi|2414601|emb|CAB16578|  (Z99295) phosphatidyl synthase [Schizosaccharomyces
            pombe]
            Length = 570

Frame  1 hits (HSPs):                                     __________      
                        __________________________________________________
Database sequence:     |             |            |            |          | 570
                       0           150          300          450

  Plus Strand HSPs:

 Score = 132 (46.5 bits), Expect = 7.2e-05, P = 7.2e-05
 Identities = 36/106 (33%), Positives = 60/106 (56%), Frame = +1

Query:    88 FNIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQSTRF 267
             F +P LLT  R++  P   L+ YL +     AAA  F  A  TD  DG++AR+++  +  
Sbjct:   399 FTLPNLLTFSRLLSAP---LIAYLYIYDYTKAAACFFLYAGFTDLVDGYIARKFDLGSIA 455

Query:   268 GAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAREII-ISAL 405
             G  LDP+ADK L+    + +     +  +TL A+ +I R+++ +SA+
Sbjct:   456 GTVLDPLADKTLMTCLTICLAVR-ETMPLTL-ASLIIGRDVLLVSAV 500


 >gi|3328933  (AE001323) CDP-diacylglycerol--glycerol-3-phosphate
            3-phosphatidyltransferase [Chlamydia trachomatis]
            Length = 168

Frame  1 hits (HSPs):           ________________________________________  
                        __________________________________________________
Database sequence:     |              |              |              |     | 168
                       0             50            100            150

  Plus Strand HSPs:

 Score = 115 (40.5 bits), Expect = 0.00017, P = 0.00017
 Identities = 43/132 (32%), Positives = 67/132 (50%), Frame = +1

Query:   190 LIFCVAAVTDWFDGFLARRWNQSTRFGAFLDPVADKVLVAIAM-VLVTEHYHSWWVTLPA 366
             L+   A V+D  DG+LARR+N ++R G+ LDP  DK+   I + VL  E+  S  +T   
Sbjct:    29 LVIFAAMVSDVLDGYLARRYNATSRLGSILDPATDKIFFLICVGVLFWEN--SLGLT-HL 85

Query:   367 ATMIAREIII---SALREWMAELGKRSSVAVSWIGKVKTTAQMVALAWL---LWRPNIWV 528
             A + +R+I +        W+         A+S+ GK  T  Q   L  +   +  P +W+
Sbjct:    86 ALIFSRDIFLVFFGFYLSWVRGWKGYDYRALSF-GKFFTVVQFFILFGMTIGMEMPVLWL 144

Query:   529 EYAGI--ALFFVAAVL 570
                 I  AL+F+  VL
Sbjct:   145 APLVILGALYFLERVL 160


 >gi|1620879|dbj|BAA11634|  (D82928) phosphatidylinositol synthase [Rattus
            norvegicus] >gi|5360694|dbj|BAA82112.1| (AB022890)
            phosphatidylinositol synthase [Rattus norvegicus]
            Length = 213

Frame  1 hits (HSPs):     __________________________________              
                        __________________________________________________
Database sequence:     |           |           |          |           |   | 213
                       0          50         100        150         200

  Plus Strand HSPs:

 Score = 119 (41.9 bits), Expect = 0.00026, P = 0.00026
 Identities = 43/154 (27%), Positives = 71/154 (46%), Frame = +1

Query:    94 IPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQSTRFGA 273
             +P L+   R++   F ++ FY  +   PF A+  + ++ + D FDG  AR  NQ TRFGA
Sbjct:    10 VPNLIGYARIV---FAIISFYF-MPCCPFTASSFYLLSGLLDAFDGHAARALNQGTRFGA 65

Query:   274 FLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAR-EIIISALREWMAELGKRSSVAV 450
              LD + D+      +V +   Y       P AT++ +  + +     W+  L   S V  
Sbjct:    66 MLDMLTDRCATMCLLVNLALLY-------PRATLLFQLSMSLDVASHWL-HLHS-SVVRG 116

Query:   451 SWIGK-VKTTAQMVALAWLLWRPNIWVEYAGIALFF 555
             S   K +  +   V   +   RP ++   AG  LF+
Sbjct:   117 SESHKMIDLSGNPVLRIYYTSRPALFTLCAGNELFY 152


 >gi|1723230|sp|Q10153|YAT8_SCHPO  HYPOTHETICAL 28.5 KD PROTEIN C1D4.08 IN
            CHROMOSOME I >gi|1177341|emb|CAA93217.1| (Z69239) putative
            cdp-diacylglycerol--inositol 3-phosphatidyltransferase
            [Schizosaccharomyces pombe]
            Length = 251

Frame  1 hits (HSPs):        ________________                             
Annotated Domains:           __________________________________________   
                        __________________________________________________
Database sequence:     |         |         |         |         |         || 251
                       0        50       100       150       200       250
__________________

Annotated Domains:
   Entrez               Transmembrane region                     27..47
   Entrez               Transmembrane region                     97..117
   Entrez               Transmembrane region                     159..179
   Entrez               Transmembrane region                     200..220
   PFAM                 CDP-OH_P_transf: CDP-alcohol phosphatidy 56..236
   BLOCKS               BL00379: CDP-alcohol phosphatidyltransfe 66..102
   PROSITE              CDP_ALCOHOL_P_TRANSF: CDP-alcohol phosph 69..91
__________________


  Plus Strand HSPs:

 Score = 113 (39.8 bits), Expect = 0.0022, P = 0.0022
 Identities = 24/79 (30%), Positives = 42/79 (53%), Frame = +1

Query:   103 LLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQSTRFGAFLD 282
             +LTL       F VL+    ++W P    +++  +++ D FDG+ AR+ +Q+T FGA LD
Sbjct:    28 ILTLCLGFTRVFLVLISLYFMSWHPNYCTIVYLYSSLLDAFDGWAARKLHQATNFGAILD 87

Query:   283 PVADKVLVAIAMVLVTEHY 339
              V D+   +  +  +   Y
Sbjct:    88 MVTDRCATSCLLCFLCAAY 106


 >gi|5453906  ref|NP_006310.1|pPIS| phosphatidylinositol synthase
            >gi|3914340|sp|O14735|PIS_HUMAN CDP-DIACYLGLYCEROL--INOSITOL
            3-PHOSPHATIDYLTRANSFERASE (PHOSPHATIDYLINOSITOL SYNTHASE)
            >gi|2338732 (AF014807) phosphatidylinositol synthase [Homo sapiens]
            Length = 213

Frame  1 hits (HSPs):     __________________________________              
                        __________________________________________________
Database sequence:     |           |           |          |           |   | 213
                       0          50         100        150         200

  Plus Strand HSPs:

 Score = 111 (39.1 bits), Expect = 0.0024, P = 0.0024
 Identities = 42/154 (27%), Positives = 69/154 (44%), Frame = +1

Query:    94 IPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQSTRFGA 273
             +P L+   R++   F ++ FY  +   P  A+  + ++ + D FDG  AR  NQ TRFGA
Sbjct:    10 VPNLIGYARIV---FAIISFYF-MPCCPLTASSFYLLSGLLDAFDGHAARALNQGTRFGA 65

Query:   274 FLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAR-EIIISALREWMAELGKRSSVAV 450
              LD + D+      +V +   Y       P AT+  +  + +     W+  L   S V  
Sbjct:    66 MLDMLTDRCSTMCLLVNLALLY-------PGATLFFQISMSLDVASHWL-HLHS-SVVRG 116

Query:   451 SWIGK-VKTTAQMVALAWLLWRPNIWVEYAGIALFF 555
             S   K +  +   V   +   RP ++   AG  LF+
Sbjct:   117 SESHKMIDLSGNPVLRIYYTSRPALFTLCAGNELFY 152


 >gi|3367632|emb|CAA04172|  (AJ000539) phosphatidylinositol synthase [Arabidopsis
            thaliana]
            Length = 227

Frame  1 hits (HSPs):      _________________________                      
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 227
                       0         50        100        150        200

  Plus Strand HSPs:

 Score = 111 (39.1 bits), Expect = 0.0029, P = 0.0029
 Identities = 36/116 (31%), Positives = 61/116 (52%), Frame = +1

Query:    94 IPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQSTRFGA 273
             IP ++   RV+L     + F +  +  P  + L F  +   D  DG++ARR+NQ + FGA
Sbjct:    18 IPNIVGYMRVLLN---CVAFAVCFSNKPLFSVLYF-FSFCCDAVDGWVARRFNQVSTFGA 73

Query:   274 FLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAELGKRSS 441
              LD V D+V  A  +V++++ Y    V L   +++A +I    L+ +   L  +SS
Sbjct:    74 VLDMVTDRVSTACLLVILSQIYRPSLVFL---SLLALDIASHWLQMYSTFLAGKSS 126


 >gi|4376912|gb|AAD18754|  (AE001646) Glycerol-3-P Phosphatidyltransferase
            [Chlamydia pneumoniae]
            Length = 168

Frame  1 hits (HSPs):            ______________________________           
                        __________________________________________________
Database sequence:     |              |              |              |     | 168
                       0             50            100            150

  Plus Strand HSPs:

 Score = 106 (37.3 bits), Expect = 0.0032, P = 0.0032
 Identities = 31/97 (31%), Positives = 53/97 (54%), Frame = +1

Query:   205 AAVTDWFDGFLARRWNQSTRFGAFLDPVADKVLVAIAM-VLVTEHY----HSWWVTLPAA 369
             A ++D  DG+LARR+  ++R G+ LDP+ DKV V + + VL  E      H +++     
Sbjct:    34 AMLSDVLDGYLARRYKATSRLGSILDPITDKVFVFVCITVLYMEGSLSIAHLFFICARDL 93

Query:   370 TMIAREIIISALREWMA-ELGKRSSVAVSWIGKVKTTAQMVAL 495
              +I     +S ++ W   + G     ++ W GK+ T  Q + L
Sbjct:    94 FLIIFVCYLSLVKGWKGYDYG-----SLFW-GKIFTVVQFIIL 130


 >gi|4115948|gb|AAD03458.1|  (AF118223) contains similarity to CDP-alcohol
            phosphatidyltransferases (Pfam:  PF01066, score=13.7, E= 0.00016,
            n=1) [Arabidopsis thaliana]
            Length = 291

Frame  1 hits (HSPs):                           _______________           
                        __________________________________________________
Database sequence:     |        |        |       |        |       |       | 291
                       0       50      100     150      200     250

  Plus Strand HSPs:

 Score = 110 (38.7 bits), Expect = 0.0069, P = 0.0069
 Identities = 28/82 (34%), Positives = 52/82 (63%), Frame = +1

Query:    91 NIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALI-FCVAAVTDW-----FDGFLARRWN 252
             N+P ++++ R++  P    V +  ++   +++A +   V+  +DW      DG++ARR  
Sbjct:   143 NVPNMISMARLVSGP----VLWWMISNEMYSSAFLGLAVSGASDWVCIFFLDGYVARRMK 198

Query:   253 QSTRFGAFLDPVADKVL---VAIAMV 321
              ++  G++LDP+ADKVL   VA+AMV
Sbjct:   199 INSVVGSYLDPLADKVLIGCVAVAMV 224


 >gi|4467144|emb|CAB37513|  (AL035540) putative phosphatidylinositol synthase
            [Arabidopsis thaliana]
            Length = 225

Frame  1 hits (HSPs):      ___________________________                    
                        __________________________________________________
Database sequence:     |          |           |          |          |     | 225
                       0         50         100        150        200

  Plus Strand HSPs:

 Score = 104 (36.6 bits), Expect = 0.019, P = 0.019
 Identities = 40/122 (32%), Positives = 61/122 (50%), Frame = +1

Query:    94 IPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQSTRFGA 273
             IP ++   RV+L      V +   T         FC  AV    DG+ AR++NQ + FGA
Sbjct:    15 IPNIVGYMRVLLNCIAFSVCFSNKTLFSLLYFFSFCCDAV----DGWCARKFNQVSTFGA 70

Query:   274 FLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAEL-GKRSSVAV 450
              LD V D+V  A  +V++++ Y    V L   +++A +I    L+ +   L GK S   V
Sbjct:    71 VLDMVTDRVSTACLLVILSQIYRPSLVFL---SLLALDIASHWLQMYSTFLSGKTSHKDV 127

Query:   451 ----SWI 459
                 SW+
Sbjct:   128 KDSTSWL 134


 >gi|4154884  (AE001471) PHOSPHATIDYLSERINE SYNTHASE [Helicobacter pylori J99]
            Length = 237

Frame  1 hits (HSPs):   _______________________________                   
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 237
                       0         50       100        150       200

  Plus Strand HSPs:

 Score = 104 (36.6 bits), Expect = 0.022, P = 0.021
 Identities = 37/146 (25%), Positives = 64/146 (43%), Frame = +1

Query:    70 LPVIMQFNIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRW 249
             +P+   +  P L T   + L    + +FY   ++    A  +   + + D  DG +AR  
Sbjct:     1 MPINPLYLFPNLFTASSIFL--GMMSIFYAS-SYQFVMACWLVVASLILDGLDGRVARLT 57

Query:   250 NQSTRFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAELG 429
             N +++FG   D +AD V   +A  L+T  Y  +        + A  +I  A+R     + 
Sbjct:    58 NTTSKFGIEFDSLADVVAFGVAPSLITYFYVGYNFGRIGMAVSALFVIFGAIRLARFNIS 117

Query:   430 KRSSVAVSWIG-KVKTTAQMVALAWLL 507
               +S   S+IG  +   A +V L  LL
Sbjct:   118 TNTSDPYSFIGIPIPAAAVLVVLCVLL 144


 >gi|1477770  (U59625) Helicobacter pylori copper transporting P type ATPase
            (copA) and Cop associated protein (copP) genes, complete cds
            [Helicobacter pylori] >gi|2253274 (AF005718) phosphatidylserine
            synthase [Helicobacter pylori]
            Length = 237

Frame  1 hits (HSPs):   _______________________________                   
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 237
                       0         50       100        150       200

  Plus Strand HSPs:

 Score = 103 (36.3 bits), Expect = 0.028, P = 0.028
 Identities = 36/146 (24%), Positives = 64/146 (43%), Frame = +1

Query:    70 LPVIMQFNIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRW 249
             +P+   +  P L T   + L    + +FY   ++    A  +   + + D  DG +AR  
Sbjct:     1 MPINPLYLFPNLFTASSIFL--GMMSIFYAS-SYQFVMACWLVVASLILDGLDGRVARLT 57

Query:   250 NQSTRFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAELG 429
             N +++FG   D +AD +   +A  L+T  Y  +        + A  +I  A+R     + 
Sbjct:    58 NTTSKFGIEFDSLADVIAFGVAPSLITYFYVGYNFGRIGMAVSALFVIFGAIRLARFNIS 117

Query:   430 KRSSVAVSWIG-KVKTTAQMVALAWLL 507
               +S   S+IG  +   A +V L  LL
Sbjct:   118 TNTSDPYSFIGIPIPAAAVLVVLCVLL 144


 >gi|2983686  (AE000730) putative protein [Aquifex aeolicus]
            Length = 207

Frame  1 hits (HSPs):         _________________________________________   
                        __________________________________________________
Database sequence:     |           |           |           |            | | 207
                       0          50         100         150          200

  Plus Strand HSPs:

 Score = 99 (34.8 bits), Expect = 0.057, P = 0.055
 Identities = 46/165 (27%), Positives = 79/165 (47%), Frame = +1

Query:    97 PTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQSTRFGAF 276
             P  +TL  + L       ++   T S    A +  ++ + D  DG +AR   ++T+FGA 
Sbjct:    28 PNFITLISLFLGSISAYFYFHHKTLS---GAFLLALSGLFDLLDGVVARTTGKTTKFGAV 84

Query:   277 LDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAELG----KRSSV 444
              D +ADK +  + +  +   Y S +V + A T+      I  +    AE+G    K+  +
Sbjct:    85 FDWIADKWVDGLVLGAIGFAYASPFVAIVAITLSMLHSFIKPVA--YAEIGYTERKKGKI 142

Query:   445 A-----VSWIGKVKTTAQMVALAWLLWRPNIWVEYA-GIALFFVAAVLTLWSML 588
                   V + G+ +T   ++  + +L R  I V    GI L    A+LTL S+L
Sbjct:   143 VDPLEGVGFFGRPETHITIILFS-ILERSPIPVGLGFGIKL---VALLTLASLL 192


 >gi|2493570|sp|Q48269|PSS_HELPY  CDP-DIACYLGLYCEROL--SERINE
            O-PHOSPHATIDYLTRANSFERASE (PHOSPHATIDYLSERINE SYNTHASE)
            >gi|2314220|gb|AAD08116.1| (AE000614) phosphatidylserine synthase
            (pssA) [Helicobacter pylori 26695]
            Length = 237

Frame  1 hits (HSPs):   _______________________________                   
Annotated Domains:      _____________________________________ __________  
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 237
                       0         50       100        150       200
__________________

Annotated Domains:
   Entrez               Transmembrane region                     3..23
   Entrez               Transmembrane region                     25..45
   Entrez               Transmembrane region                     73..93
   Entrez               Transmembrane region                     95..115
   Entrez               Transmembrane region                     124..144
   Entrez               Transmembrane region                     150..170
   Entrez               Transmembrane region                     184..204
   Entrez               Transmembrane region                     207..227
   PFAM                 CDP-OH_P_transf: CDP-alcohol phosphatidy 37..175
   BLOCKS               BL00379: CDP-alcohol phosphatidyltransfe 47..83
   PROSITE              CDP_ALCOHOL_P_TRANSF: CDP-alcohol phosph 50..72
   PROSITE              LEUCINE_ZIPPER: Leucine zipper pattern.  137..158
   PROSITE              LEUCINE_ZIPPER: Leucine zipper pattern.  144..165
   PROSITE              PROKAR_LIPOPROTEIN: Prokaryotic membrane 27..37
__________________


  Plus Strand HSPs:

 Score = 98 (34.5 bits), Expect = 0.11, P = 0.10
 Identities = 35/146 (23%), Positives = 63/146 (43%), Frame = +1

Query:    70 LPVIMQFNIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRW 249
             +P+   +  P L T   + L    + +FY   ++    A  +   + + D  DG +AR  
Sbjct:     1 MPINPLYLFPNLFTASSIFL--GMMSIFYAS-SYQFVMACWLVVASLILDGLDGRVARLT 57

Query:   250 NQSTRFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAELG 429
             N +++FG   D +AD +   +A  L+   Y  +        + A  +I  A+R     + 
Sbjct:    58 NTTSKFGIEFDSLADVIAFGVAPSLIAYFYVGYNFGRIGMAVSALFVIFGAIRLARFNIS 117

Query:   430 KRSSVAVSWIG-KVKTTAQMVALAWLL 507
               +S   S+IG  +   A +V L  LL
Sbjct:   118 TNTSDPYSFIGIPIPAAAVLVVLCVLL 144


 >gi|5105201|dbj|BAA80515.1|  (AP000061) 223aa long hypothetical protein
            [Aeropyrum pernix]
            Length = 223

Frame  1 hits (HSPs):                   __________________                
                        __________________________________________________
Database sequence:     |          |           |          |          |     | 223
                       0         50         100        150        200

  Plus Strand HSPs:

 Score = 97 (34.1 bits), Expect = 0.12, P = 0.11
 Identities = 23/77 (29%), Positives = 41/77 (53%), Frame = +1

Query:   190 LIFCVAAVTDWFDGFLARRWNQSTRFGAFLDPVADK-----VLVAIAMVLVTEHYHSWWV 354
             L+  +++V D  DG +ARR   +++ G FLD + D+     + +A+A   V  H    W 
Sbjct:    76 LLVQLSSVLDGVDGIVARRLRAASKAGGFLDTMLDRYADTVIYLALAYAAVATHGLETWA 135

Query:   355 TLPAATMIAREIIISAL 405
              L A   ++ +I++S L
Sbjct:   136 VLTAVLAVSGDIMVSYL 152


 >gi|2648809  (AE000982) CDP-diacylglycerol--glycerol-3-phosphate
            3-phosphatidyltransferase (pgsA-2) [Archaeoglobus fulgidus]
            Length = 172

Frame  1 hits (HSPs):      _________________________________              
                        __________________________________________________
Database sequence:     |              |             |              |      | 172
                       0             50           100            150

  Plus Strand HSPs:

 Score = 94 (33.1 bits), Expect = 0.12, P = 0.12
 Identities = 29/119 (24%), Positives = 59/119 (49%), Frame = +1

Query:    97 PTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQSTRFGAF 276
             P  LTL  ++   F ++  YL +      A++   ++++ D  DG LAR+   +T+FG +
Sbjct:    12 PNHLTLAGLV---FALISSYLIIEGRILHASIFVLLSSLCDLLDGALARKAELTTKFGGY 68

Query:   277 LDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAELGKRSSVAVS 453
             LD V D+  V + + +    Y   WV +  A  ++  +++S  R     + ++  V ++
Sbjct:    69 LDSVTDRY-VDVILFISLGIYGVDWVAIAMA--MSGALLVSYTRARAETIIEKCDVGIA 124


 >gi|2688662  (AE001172) CDP-diacylglycerol--glycerol-3-phosphate
            3-phosphatidyltransferase [Borrelia burgdorferi]
            Length = 209

Frame  1 hits (HSPs):     _______________________________________         
                        __________________________________________________
Database sequence:     |           |           |           |           |  | 209
                       0          50         100         150         200

  Plus Strand HSPs:

 Score = 96 (33.8 bits), Expect = 0.13, P = 0.12
 Identities = 44/160 (27%), Positives = 73/160 (45%), Frame = +1

Query:    97 PTLLTLFRVILIPFFVLVFYLP-VTWSPFAAALI-FCVA--AVTDWFDGFLARRWNQSTR 264
             P  +TL R+ L    +++F+L  V +S     +I F +     TD+ DG+LAR++   + 
Sbjct:    10 PNKITLVRIALSFIILILFFLENVFFSYLFFGIIWFLIIFNEFTDFIDGYLARKYGLVSN 69

Query:   265 FGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAELGKRSSV 444
              G  LDP AD VL  +    V   Y            I REI I  +R  + +       
Sbjct:    70 VGKILDPYAD-VLQHLTY-FVFFFYKGITPYYFFVIFIYREISIGFVRNLIIQFNVVQQA 127

Query:   445 AVSWIGKVKTTAQMVA-LAWLLWRPNIWVEYAGIALFFVAAVLT 573
               +++GK+K+    V   A LL+     + +      F++ +LT
Sbjct:   128 --NFLGKLKSLLYAVCTFASLLFYTLNQLNFTESVQNFISYILT 169


 >gi|130240|sp|P06197|PIS_YEAST  CDP-DIACYLGLYCEROL--INOSITOL
            3-PHOSPHATIDYLTRANSFERASE (PHOSPHATIDYLINOSITOL SYNTHASE)
            >gi|82930|pir||A27409 CDPdiacylglycerol--inositol
            3-phosphatidyltransferase (EC 2.7.8.11) - yeast (Saccharomyces
            cerevisiae) >gi|172173 (J02697) phosphatidylinositol synthase
            [Saccharomyces cerevisiae] >gi|914984 (U32445)
            CDP-diacylglycerol--Inositol 3-phosphatidyltransferase (Swiss Prot.
            accession number P06197) [Saccharomyces cerevisiae]
            Length = 220

Frame  1 hits (HSPs):       ___________________                           
Annotated Domains:      _         _____________________________________  _
                        __________________________________________________
Database sequence:     |           |          |          |           |    | 220
                       0          50        100        150         200
__________________

Annotated Domains:
   Entrez               glycosylation site                       4
   Entrez               glycosylation site                       217
   PFAM                 CDP-OH_P_transf: CDP-alcohol phosphatidy 46..205
   BLOCKS               BL00379: CDP-alcohol phosphatidyltransfe 56..92
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  120..127
   PROSITE              CDP_ALCOHOL_P_TRANSF: CDP-alcohol phosph 59..81
__________________


  Plus Strand HSPs:

 Score = 96 (33.8 bits), Expect = 0.15, P = 0.14
 Identities = 28/87 (32%), Positives = 42/87 (48%), Frame = +1

Query:    94 IPTLLTLFRVIL--IPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQSTRF 267
             IP  +   RVI   + FFV+  +      P A   ++  + + D  DG +AR++NQ +  
Sbjct:    19 IPNKIGYVRVITAALSFFVMKNH------PTAFTWLYSTSCLLDALDGTMARKYNQVSSL 72

Query:   268 GAFLDPVADKVLVAIAMVLVTEHYHSWWV 354
             GA LD V D+   A  M  +   Y  W V
Sbjct:    73 GAVLDMVTDRSSTAGLMCFLCVQYPQWCV 101


 >gi|2983786  (AE000737) glucose-1-phosphate thymidylyltransferase [Aquifex
            aeolicus]
            Length = 428

Frame  1 hits (HSPs):                                ___________          
                        __________________________________________________
Database sequence:     |                 |                |               | 428
                       0               150              300

  Plus Strand HSPs:

 Score = 100 (35.2 bits), Expect = 0.18, P = 0.16
 Identities = 27/97 (27%), Positives = 47/97 (48%), Frame = +1

Query:    73 PVIMQFNIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWN 252
             P ++    P  LT+   +L  F  LV Y    +SP    ++  + ++ D  DG +AR   
Sbjct:   250 PYLVDKFTPNQLTVLTFLLGMFSALVAY----FSPALGGILLQINSMLDGLDGEVARAQM 305

Query:   253 QSTRFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLP 363
             ++T+FGA+LD V D+ +    +  +  H    W  +P
Sbjct:   306 RTTKFGAWLDSVLDRYVDFAFLSALAMHLKPSWDFMP 342


WARNING:  HSPs involving 14 database sequences were not reported due to the
          limiting value of parameter B = 50.


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=6.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.357   0.161   0.606  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.349   0.152   0.585  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.345   0.148   0.506  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.342   0.142   0.454  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.349   0.152   0.536  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.331   0.142   0.461  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      318       299       10.  78 3  12 22  0.11    36
                                                    33  0.10    40
   +2      0      318       299       10.  78 3  12 22  0.11    36
                                                    33  0.10    40
   +1      0      318       298       10.  78 3  12 22  0.11    36
                                                    33  0.10    40
   -1      0      318       299       10.  78 3  12 22  0.11    36
                                                    33  0.10    40
   -2      0      318       299       10.  78 3  12 22  0.11    36
                                                    33  0.10    40
   -3      0      318       299       10.  78 3  12 22  0.11    36
                                                    33  0.10    40


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  11:29 PM CDT Oct 9, 1999
    Format:  BLAST
  # of letters in database:  127,702,997
  # of sequences in database:  416,691
  # of database sequences satisfying E:  64
  No. of states in DFA:  596 (59 KB)
  Total size of DFA:  316 KB (320 KB)
  Time to generate neighborhood:  0.04u 0.00s 0.04t  Elapsed: 00:00:00
  No. of threads or processors used:  4
  Search cpu time:  324.77u 1.09s 325.86t  Elapsed: 00:01:24
  Total cpu time:  324.90u 1.15s 326.05t  Elapsed: 00:01:25
  Start:  Fri Oct 15 16:53:53 1999   End:  Fri Oct 15 16:55:18 1999

WARNINGS ISSUED:  2
  Annotated Domains Database:   March 18, 1999
    Release Date:  December 22, 1998