The Sanger Centre blast servers are
 Please note that as of 12/11/96 the C. elegans genomic sequence database will contain all finished genomic sequences as well as the unfinished sequences from BOTH the St. Louis and Sanger Centre sequencing groups. Unfinished sequences from St. Louis can also be downloaded from the Sanger Centre ftp site Please note that unfinished sequences will contain errors, including possibly contamination from other sources e.g. vector, E. coli and yeast sequences
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BLASTN 2.0a13MP-WashU [10-Jun-1997] [Build 23:08:16 Jun 10 1997]
Reference: Gish, Warren (1994-1997). unpublished.
Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W. Myers, and David J.
Lipman (1990). Basic local alignment search tool. J. Mol. Biol. 215:403-10.
Notice: this program and its default parameter settings are optimized to find
nearly identical sequences rapidly. To identify weak similarities encoded in
nucleic acid, use BLASTX, TBLASTN or TBLASTX.
Query= query_seq
(960 letters)
Database: allcmid
4443 sequences; 121,087,920 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
C43H6 EMBL:U51999 193 0.9998 1
>C43H6 [Full Sequence] [EMBL:U51999] [Webace] EMBL:U51999
Length = 22,652
Plus Strand HSPs:
Score = 193 (29.0 bits), Expect = 8.6, P = 1.0
Identities = 61/81 (75%), Positives = 61/81 (75%), Strand = Plus / Plus
Query: 785 TGCGGGAATAGCTCAGTTGGTAGAGCACGACC--TTGCCAAGGTCGGGGTCGCGAGTTCG 842
TGCGGGAATAGCTCAGT GG AG G A CC TTGC AA T G GGTC CGAGTTCG
Sbjct: 20817 TGCGGGAATAGCTCAGTAGGCAGGG-ATTTCCGGTTGC-AATCTAGAGGTCACGAGTTCG 20874
Query: 843 AGTCTCGTTTCCCGCTCCAGTTT 865
AGTC G TTCCC CT GTTT
Sbjct: 20875 AGTCCGGCTTCCCCCTTTGGTTT 20897
Parameters:
P=6
B=50
ctxfactor=2.00
E=10
Query ----- As Used ----- ----- Computed ----
Strand MatID Matrix name Lambda K H Lambda K H
+1 0 +5,-4 0.192 0.173 0.357 same same same
q=10 r=10 0.104 0.0151 0.0600
-1 0 +5,-4 0.192 0.173 0.357 same same same
q=10 r=10 0.104 0.0151 0.0600
Query
Strand MatID Length Eff.Length E S W T X E2 S2
+1 0 960 960 10. 186 11 N/A 73 0.023 82
93 0.025 123
-1 0 960 960 10. 186 11 N/A 73 0.023 82
93 0.025 123
Statistics:
Database: allcmid
Title: allcmid
Release date: unknown
Posted date: 5:22 AM BST Oct 14, 1999
Format: BLAST
# of letters in database: 121,087,920
# of sequences in database: 4443
# of database sequences satisfying E: 1
No. of states in DFA: 251 (502 KB)
Total size of DFA: 547 KB (576 KB)
Time to generate neighborhood: 0.00u 0.01s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 3.98u 3.15s 7.13t Elapsed: 00:00:03
Total cpu time: 4.01u 3.21s 7.23t Elapsed: 00:00:03
Start: Thu Oct 14 15:11:43 1999 End: Thu Oct 14 15:11:46 1999
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