|
Links to Entrez and to the Sequence Retrieval System (SRS) provided by the Human Genome Sequencing Center, Baylor College of Medicine:
= Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
= Retrieve Entrez links to Related sequences (neighbors).
= Retrieve SRS links (if present).
SW perc perc perc query position in query matching repeat position in repeat score div. del. ins. sequence begin end (left) repeat class/family begin end (left) 229 26.8 0.0 0.0 ECOPGSA 789 844 (112) + tRNA-Lys-AAG tRNA 8 63 (13)
229 26.79 0.00 0.00 ECOPGSA 789 844 (112) tRNA-Lys-AAG#tRNA 8 63 (13)
ECOPGSA 789 TAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCG 838
i i vvi vii vv i i i
tRNA-Lys-AAG#tR 8 TAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 57
ECOPGSA 839 AGTCTC 844
i i
tRNA-Lys-AAG#tR 58 AGCCCC 63
Transitions / transversions = 2.00 (10 / 5)
Gap_init rate = 0.00 (0 / 56), avg. gap size = 0.00 (0 / 0)
>ECOPGSA GATCTTCTGGTCGTTGAAACATTGATGTCTCTGTAGCAACATAGGGGTAA TCTTACTGACAACAGATAGTTACCCGTCATTATGCAATTTAATATCCCTA CGTTGCTTACACTGTTCCGTGTCATCCTTATCCCATTCTTTGTATTGGTC TTTTATCTGCCTGTCACCTGGTCGCCGTTTGCCGCCGCGCTCATTTTCTG CGTCGCGGCGGTGACTGACTGGTTCGATGGTTTTCTGGCACGCCGCTGGA ACCAGAGTACCCGGTTTGGTGCTTTCCTTGACCCTGTGGCAGATAAAGTT CTCGTGGCTATCGCCATGGTGCTGGTAACCGAGCATTATCACAGCTGGTG GGTGACATTACCGGCGGCAACGATGATCGCCCGTGAAATTATTATTTCTG CGCTACGCGAATGGATGGCGGAGTTGGGTAAACGCAGTAGCGTGGCCGTC TCCTGGATTGGGAAAGTGAAAACCACTGCCCAGATGGTGGCGTTGGCATG GCTGCTGTGGCGTCCGAACATTTGGGTTGAGTACGCCGGTATTGCACTTT TCTTTGTGGCTGCGGTACTGACTCTGTGGTCAATGTTGCAATATTTGAGC GCTGCGCGTGCAGATTTGCTTGATCAGTGATCGTTTCGGCGTAATTTTCA GCAAACGATCAAAAGTGGTGAAAAATATCGTTGACTCATCGCGCCAGGTA AGTAGAATGCAACGCATCGAACGGCGGCACTGATTGCCAGACGATAATAA AATCAAGTGATTAACTGATTGCTTGATGAATGCGGGAANNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTCC CGCTCCAGTTTAAAAGACATCGGCGTCAAGCGGATGTCTGGCTGAAAGGC CTGAAGAATTTGGCGCGTTAACAAAGCGGTTATGTAGCGGATTGCAAATC CGTCTA
==================================================
file name: /repeatmasker/tmp/RM2seq
sequences: 1
total length: 956 bp
GC level: 49.90 %
bases masked 56 bp ( 5.86 %)
==================================================
number of length percentage
elements* occupied of sequence
--------------------------------------------------
SINEs: 0 0 bp 0.00 %
ALUs 0 0 bp 0.00 %
MIRs 0 0 bp 0.00 %
LINEs: 0 0 bp 0.00 %
LINE1 0 0 bp 0.00 %
LINE2 0 0 bp 0.00 %
LTR elements: 0 0 bp 0.00 %
MaLRs 0 0 bp 0.00 %
Retrov. 0 0 bp 0.00 %
MER4_group 0 0 bp 0.00 %
DNA elements: 0 0 bp 0.00 %
MER1_type 0 0 bp 0.00 %
MER2_type 0 0 bp 0.00 %
Mariners 0 0 bp 0.00 %
Unclassified: 0 0 bp 0.00 %
Total interspersed repeats: 0 bp 0.00 %
Small RNA: 1 56 bp 5.86 %
Satellites: 0 0 bp 0.00 %
Simple repeats: 0 0 bp 0.00 %
Low complexity: 0 0 bp 0.00 %
==================================================
* most repeats fragmented by insertions or deletions
have been counted as one element
The sequence(s) were assumed to be of primate origin.
RepeatMasker version 05/05/99 default
ProcessRepeats version 05/05/99
Repbase version 3.04
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ECOPGSA
(956 letters)
If you have any problems or questions with the results of this search
please refer to the BLAST FAQs
Score E
Sequences producing significant alignments: (bits) Value
gi|1736561|dbj|D90832|D90832 E.coli genomic DNA, Kohara clo... 1562 0.0
gi|473748|gb|M12299|ECOPGSA E. coli pgsA and glyW genes enc... 1562 0.0
gi|1788214|gb|AE000284|AE000284 Escherichia coli K-12 MG165... 1562 0.0
gi|43287|emb|X03691|ECUVRC E. coli uvrC gene for DNA repair 301 2e-79
gi|43166|emb|X52789.1|ECTRNGCL E.coli glyW, cysT, and leuZ ... 240 5e-61
gi|41604|emb|X03239|ECGLYWG E. coli glyW region, a duplicat... 222 1e-55
gi|174417|gb|K00179|ECOTRC E.coli Cys-tRNA. 90 1e-15
gi|209462|gb|M13693|SYNTGCAS Synthetic E.coli Cys-tRNA-CUA ... 76 2e-11
gi|304956|gb|L18934|ECOTRCYSA Escherichia coli transfer RNA... 76 2e-11
gi|1573035|gb|U32694|U32694 Haemophilus influenzae Rd secti... 42 0.26
gi|149831|gb|M28472|MLCGSA M.capsulatus glutamine synthetas... 42 0.26
gi|2150137|gb|AF002991|HSAF002991 Homo sapiens cosmid, comp... 40 1.0
gi|3688143|emb|Y17083|AIY17083 Alternaria infectoria gene e... 40 1.0
gi|3688137|emb|Y17075|AIY17075 Alternaria infectoria gene e... 40 1.0
gi|3688139|emb|Y17076|ALY17076 Alternaria linicola gene enc... 40 1.0
gi|3688167|emb|Y17081|ASY17081 Alternaria solani gene encod... 40 1.0
gi|3688147|emb|Y17085|ALY17085 Alternaria linicola gene enc... 40 1.0
gi|3688153|emb|Y17078|ASY17078 Alternaria solani gene encod... 40 1.0
gi|3688163|emb|Y17079|ASY17079 Alternaria solani gene encod... 40 1.0
gi|3688165|emb|Y17080|ASY17080 Alternaria solani gene encod... 40 1.0
gi|2822174|gb|AC004079|AC004079 Homo sapiens PAC clone DJ01... 38 4.0
gi|4263636|gb|AC005150|AC005150 Homo sapiens chromosome 4 c... 38 4.0
gi|561532|emb|X78811|RN17BHD1 R.norvegicus mRNA for 17-beta... 38 4.0
gi|1684742|emb|Y09534|RLSPRLVCP R.leguminosarum Symbiosis P... 38 4.0
gi|310644|gb|M90544|STYRESM Salmonella typhimurium adenine-... 38 4.0
gi|187058|gb|M38684|HUMLD1 Human formin (FMN) gene, exon 1. 38 4.0
gi|2772525|gb|AC003994|AC003994 Mouse cosmid ma53a271 from ... 38 4.0
gi|1321938|emb|X97754|RNBOHSTDH R.norvegicus mRNA for 17-be... 38 4.0
gi|3928786|gb|AF059284|AF059284 Strongylocentrotus purpurat... 38 4.0
gi|2370071|emb|Z98941|HS204E5 Human DNA sequence from PAC 2... 38 4.0
gi|2957158|gb|AC004405|AC004405 Mus musculus ma36a240, comp... 38 4.0
gi|3043508|emb|X98038|RN17BHD R.norvegicus gene encoding 17... 38 4.0
gi|472895|emb|X77484|CBMGM C.barkeri mgm gene 38 4.0
gi|780654|gb|U23040|RLU23040 Rhizobium leguminosarum bv. vi... 38 4.0
gi|1736561|dbj|D90832|D90832 E.coli genomic DNA, Kohara clone #341(42.7-43.1 min.)
Length = 19662
Score = 1562 bits (788), Expect = 0.0
Identities = 788/788 (100%)
Strand = Plus / Minus
Query: 1 gatcttctggtcgttgaaacattgatgtctctgtagcaacataggggtaatcttactgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9428 gatcttctggtcgttgaaacattgatgtctctgtagcaacataggggtaatcttactgac 9369
Query: 61 aacagatagttacccgtcattatgcaatttaatatccctacgttgcttacactgttccgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9368 aacagatagttacccgtcattatgcaatttaatatccctacgttgcttacactgttccgt 9309
Query: 121 gtcatccttatcccattctttgtattggtcttttatctgcctgtcacctggtcgccgttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9308 gtcatccttatcccattctttgtattggtcttttatctgcctgtcacctggtcgccgttt 9249
Query: 181 gccgccgcgctcattttctgcgtcgcggcggtgactgactggttcgatggttttctggca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9248 gccgccgcgctcattttctgcgtcgcggcggtgactgactggttcgatggttttctggca 9189
Query: 241 cgccgctggaaccagagtacccggtttggtgctttccttgaccctgtggcagataaagtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9188 cgccgctggaaccagagtacccggtttggtgctttccttgaccctgtggcagataaagtt 9129
Query: 301 ctcgtggctatcgccatggtgctggtaaccgagcattatcacagctggtgggtgacatta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9128 ctcgtggctatcgccatggtgctggtaaccgagcattatcacagctggtgggtgacatta 9069
Query: 361 ccggcggcaacgatgatcgcccgtgaaattattatttctgcgctacgcgaatggatggcg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9068 ccggcggcaacgatgatcgcccgtgaaattattatttctgcgctacgcgaatggatggcg 9009
Query: 421 gagttgggtaaacgcagtagcgtggccgtctcctggattgggaaagtgaaaaccactgcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9008 gagttgggtaaacgcagtagcgtggccgtctcctggattgggaaagtgaaaaccactgcc 8949
Query: 481 cagatggtggcgttggcatggctgctgtggcgtccgaacatttgggttgagtacgccggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8948 cagatggtggcgttggcatggctgctgtggcgtccgaacatttgggttgagtacgccggt 8889
Query: 541 attgcacttttctttgtggctgcggtactgactctgtggtcaatgttgcaatatttgagc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8888 attgcacttttctttgtggctgcggtactgactctgtggtcaatgttgcaatatttgagc 8829
Query: 601 gctgcgcgtgcagatttgcttgatcagtgatcgtttcggcgtaattttcagcaaacgatc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8828 gctgcgcgtgcagatttgcttgatcagtgatcgtttcggcgtaattttcagcaaacgatc 8769
Query: 661 aaaagtggtgaaaaatatcgttgactcatcgcgccaggtaagtagaatgcaacgcatcga 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8768 aaaagtggtgaaaaatatcgttgactcatcgcgccaggtaagtagaatgcaacgcatcga 8709
Query: 721 acggcggcactgattgccagacgataataaaatcaagtgattaactgattgcttgatgaa 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8708 acggcggcactgattgccagacgataataaaatcaagtgattaactgattgcttgatgaa 8649
Query: 781 tgcgggaa 788
||||||||
Sbjct: 8648 tgcgggaa 8641
Score = 222 bits (112), Expect = 1e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 845 gtttcccgctccagtttaaaagacatcggcgtcaagcggatgtctggctgaaaggcctga 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8584 gtttcccgctccagtttaaaagacatcggcgtcaagcggatgtctggctgaaaggcctga 8525
Query: 905 agaatttggcgcgttaacaaagcggttatgtagcggattgcaaatccgtcta 956
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8524 agaatttggcgcgttaacaaagcggttatgtagcggattgcaaatccgtcta 8473
gi|473748|gb|M12299|ECOPGSA E. coli pgsA and glyW genes encoding phosphatidylglycerophosphate
synthase and Gly-tRNA-3, complete cds, and uvrC gene, 3'
end.
Length = 956
Score = 1562 bits (788), Expect = 0.0
Identities = 788/788 (100%)
Strand = Plus / Plus
Query: 1 gatcttctggtcgttgaaacattgatgtctctgtagcaacataggggtaatcttactgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatcttctggtcgttgaaacattgatgtctctgtagcaacataggggtaatcttactgac 60
Query: 61 aacagatagttacccgtcattatgcaatttaatatccctacgttgcttacactgttccgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aacagatagttacccgtcattatgcaatttaatatccctacgttgcttacactgttccgt 120
Query: 121 gtcatccttatcccattctttgtattggtcttttatctgcctgtcacctggtcgccgttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcatccttatcccattctttgtattggtcttttatctgcctgtcacctggtcgccgttt 180
Query: 181 gccgccgcgctcattttctgcgtcgcggcggtgactgactggttcgatggttttctggca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gccgccgcgctcattttctgcgtcgcggcggtgactgactggttcgatggttttctggca 240
Query: 241 cgccgctggaaccagagtacccggtttggtgctttccttgaccctgtggcagataaagtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cgccgctggaaccagagtacccggtttggtgctttccttgaccctgtggcagataaagtt 300
Query: 301 ctcgtggctatcgccatggtgctggtaaccgagcattatcacagctggtgggtgacatta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctcgtggctatcgccatggtgctggtaaccgagcattatcacagctggtgggtgacatta 360
Query: 361 ccggcggcaacgatgatcgcccgtgaaattattatttctgcgctacgcgaatggatggcg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ccggcggcaacgatgatcgcccgtgaaattattatttctgcgctacgcgaatggatggcg 420
Query: 421 gagttgggtaaacgcagtagcgtggccgtctcctggattgggaaagtgaaaaccactgcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gagttgggtaaacgcagtagcgtggccgtctcctggattgggaaagtgaaaaccactgcc 480
Query: 481 cagatggtggcgttggcatggctgctgtggcgtccgaacatttgggttgagtacgccggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cagatggtggcgttggcatggctgctgtggcgtccgaacatttgggttgagtacgccggt 540
Query: 541 attgcacttttctttgtggctgcggtactgactctgtggtcaatgttgcaatatttgagc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 attgcacttttctttgtggctgcggtactgactctgtggtcaatgttgcaatatttgagc 600
Query: 601 gctgcgcgtgcagatttgcttgatcagtgatcgtttcggcgtaattttcagcaaacgatc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gctgcgcgtgcagatttgcttgatcagtgatcgtttcggcgtaattttcagcaaacgatc 660
Query: 661 aaaagtggtgaaaaatatcgttgactcatcgcgccaggtaagtagaatgcaacgcatcga 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aaaagtggtgaaaaatatcgttgactcatcgcgccaggtaagtagaatgcaacgcatcga 720
Query: 721 acggcggcactgattgccagacgataataaaatcaagtgattaactgattgcttgatgaa 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 acggcggcactgattgccagacgataataaaatcaagtgattaactgattgcttgatgaa 780
Query: 781 tgcgggaa 788
||||||||
Sbjct: 781 tgcgggaa 788
Score = 222 bits (112), Expect = 1e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 845 gtttcccgctccagtttaaaagacatcggcgtcaagcggatgtctggctgaaaggcctga 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 gtttcccgctccagtttaaaagacatcggcgtcaagcggatgtctggctgaaaggcctga 904
Query: 905 agaatttggcgcgttaacaaagcggttatgtagcggattgcaaatccgtcta 956
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 agaatttggcgcgttaacaaagcggttatgtagcggattgcaaatccgtcta 956
gi|1788214|gb|AE000284|AE000284 Escherichia coli K-12 MG1655 section 174 of 400 of the complete
genome
Length = 12485
Score = 1562 bits (788), Expect = 0.0
Identities = 788/788 (100%)
Strand = Plus / Minus
Query: 1 gatcttctggtcgttgaaacattgatgtctctgtagcaacataggggtaatcttactgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4926 gatcttctggtcgttgaaacattgatgtctctgtagcaacataggggtaatcttactgac 4867
Query: 61 aacagatagttacccgtcattatgcaatttaatatccctacgttgcttacactgttccgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4866 aacagatagttacccgtcattatgcaatttaatatccctacgttgcttacactgttccgt 4807
Query: 121 gtcatccttatcccattctttgtattggtcttttatctgcctgtcacctggtcgccgttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4806 gtcatccttatcccattctttgtattggtcttttatctgcctgtcacctggtcgccgttt 4747
Query: 181 gccgccgcgctcattttctgcgtcgcggcggtgactgactggttcgatggttttctggca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4746 gccgccgcgctcattttctgcgtcgcggcggtgactgactggttcgatggttttctggca 4687
Query: 241 cgccgctggaaccagagtacccggtttggtgctttccttgaccctgtggcagataaagtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4686 cgccgctggaaccagagtacccggtttggtgctttccttgaccctgtggcagataaagtt 4627
Query: 301 ctcgtggctatcgccatggtgctggtaaccgagcattatcacagctggtgggtgacatta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4626 ctcgtggctatcgccatggtgctggtaaccgagcattatcacagctggtgggtgacatta 4567
Query: 361 ccggcggcaacgatgatcgcccgtgaaattattatttctgcgctacgcgaatggatggcg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4566 ccggcggcaacgatgatcgcccgtgaaattattatttctgcgctacgcgaatggatggcg 4507
Query: 421 gagttgggtaaacgcagtagcgtggccgtctcctggattgggaaagtgaaaaccactgcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4506 gagttgggtaaacgcagtagcgtggccgtctcctggattgggaaagtgaaaaccactgcc 4447
Query: 481 cagatggtggcgttggcatggctgctgtggcgtccgaacatttgggttgagtacgccggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4446 cagatggtggcgttggcatggctgctgtggcgtccgaacatttgggttgagtacgccggt 4387
Query: 541 attgcacttttctttgtggctgcggtactgactctgtggtcaatgttgcaatatttgagc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4386 attgcacttttctttgtggctgcggtactgactctgtggtcaatgttgcaatatttgagc 4327
Query: 601 gctgcgcgtgcagatttgcttgatcagtgatcgtttcggcgtaattttcagcaaacgatc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4326 gctgcgcgtgcagatttgcttgatcagtgatcgtttcggcgtaattttcagcaaacgatc 4267
Query: 661 aaaagtggtgaaaaatatcgttgactcatcgcgccaggtaagtagaatgcaacgcatcga 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4266 aaaagtggtgaaaaatatcgttgactcatcgcgccaggtaagtagaatgcaacgcatcga 4207
Query: 721 acggcggcactgattgccagacgataataaaatcaagtgattaactgattgcttgatgaa 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4206 acggcggcactgattgccagacgataataaaatcaagtgattaactgattgcttgatgaa 4147
Query: 781 tgcgggaa 788
||||||||
Sbjct: 4146 tgcgggaa 4139
Score = 222 bits (112), Expect = 1e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 845 gtttcccgctccagtttaaaagacatcggcgtcaagcggatgtctggctgaaaggcctga 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4082 gtttcccgctccagtttaaaagacatcggcgtcaagcggatgtctggctgaaaggcctga 4023
Query: 905 agaatttggcgcgttaacaaagcggttatgtagcggattgcaaatccgtcta 956
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4022 agaatttggcgcgttaacaaagcggttatgtagcggattgcaaatccgtcta 3971
gi|43287|emb|X03691|ECUVRC E. coli uvrC gene for DNA repair
Length = 4549
Score = 301 bits (152), Expect = 2e-79
Identities = 155/156 (99%)
Strand = Plus / Plus
Query: 1 gatcttctggtcgttgaaacattgatgtctctgtagcaacataggggtaatcttactgac 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4394 gatcttctggtcgttgaaacattgatgtctctgtggcaacataggggtaatcttactgac 4453
Query: 61 aacagatagttacccgtcattatgcaatttaatatccctacgttgcttacactgttccgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4454 aacagatagttacccgtcattatgcaatttaatatccctacgttgcttacactgttccgt 4513
Query: 121 gtcatccttatcccattctttgtattggtcttttat 156
||||||||||||||||||||||||||||||||||||
Sbjct: 4514 gtcatccttatcccattctttgtattggtcttttat 4549
gi|43166|emb|X52789.1|ECTRNGCL E.coli glyW, cysT, and leuZ genes for tRNA-Gly, tRNA-Cys and
tRNA-Leu
Length = 500
Score = 240 bits (121), Expect = 5e-61
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 668 gtgaaaaatatcgttgactcatcgcgccaggtaagtagaatgcaacgcatcgaacggcgg 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgaaaaatatcgttgactcatcgcgccaggtaagtagaatgcaacgcatcgaacggcgg 60
Query: 728 cactgattgccagacgataataaaatcaagtgattaactgattgcttgatgaatgcggga 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cactgattgccagacgataataaaatcaagtgattaactgattgcttgatgaatgcggga 120
Query: 788 a 788
|
Sbjct: 121 a 121
Score = 222 bits (112), Expect = 1e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 845 gtttcccgctccagtttaaaagacatcggcgtcaagcggatgtctggctgaaaggcctga 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 gtttcccgctccagtttaaaagacatcggcgtcaagcggatgtctggctgaaaggcctga 237
Query: 905 agaatttggcgcgttaacaaagcggttatgtagcggattgcaaatccgtcta 956
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 agaatttggcgcgttaacaaagcggttatgtagcggattgcaaatccgtcta 289
gi|41604|emb|X03239|ECGLYWG E. coli glyW region, a duplicated gene for tRNA-Gly-3
Length = 890
Score = 222 bits (112), Expect = 1e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 845 gtttcccgctccagtttaaaagacatcggcgtcaagcggatgtctggctgaaaggcctga 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 gtttcccgctccagtttaaaagacatcggcgtcaagcggatgtctggctgaaaggcctga 232
Query: 905 agaatttggcgcgttaacaaagcggttatgtagcggattgcaaatccgtcta 956
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 agaatttggcgcgttaacaaagcggttatgtagcggattgcaaatccgtcta 284
Score = 210 bits (106), Expect = 5e-52
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 683 gactcatcgcgccaggtaagtagaatgcaacgcatcgaacggcggcactgattgccagac 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gactcatcgcgccaggtaagtagaatgcaacgcatcgaacggcggcactgattgccagac 70
Query: 743 gataataaaatcaagtgattaactgattgcttgatgaatgcgggaa 788
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 gataataaaatcaagtgattaactgattgcttgatgaatgcgggaa 116
gi|174417|gb|K00179|ECOTRC E.coli Cys-tRNA.
Length = 74
Score = 89.7 bits (45), Expect = 1e-15
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 912 ggcgcgttaacaaagcggttatgtagcggattgcaaatccgtcta 956
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcgcgttaacaaagcggttatgtagcggattgcaaatccgtcta 45
gi|209462|gb|M13693|SYNTGCAS Synthetic E.coli Cys-tRNA-CUA amber suppressor gene.
Length = 84
Score = 75.8 bits (38), Expect = 2e-11
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 907 aatttggcgcgttaacaaagcggttatgtagcggattgcaaatccgtcta 956
|||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 aattcggcgcgttaacaaagcggttatgtagcggattctaaatccgtcta 50
gi|304956|gb|L18934|ECOTRCYSA Escherichia coli transfer RNA-Cys.
Length = 74
Score = 75.8 bits (38), Expect = 2e-11
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 915 gcgttaacaaagcggttatgtagcggattgcaaatccgtcta 956
||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 4 gcgttaacaaagcggttatgtagcggatttcaaatccgtcta 45
gi|1573035|gb|U32694|U32694 Haemophilus influenzae Rd section 9 of 163 of the complete genome
Length = 11350
Score = 42.1 bits (21), Expect = 0.26
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 911 tggcgcgttaacaaagcggttatgtagcggattgcaaatcc 951
||||| |||| ||||||||||||| | |||||||||||||
Sbjct: 2535 tggcgtgttagcaaagcggttatgcactggattgcaaatcc 2575
gi|149831|gb|M28472|MLCGSA M.capsulatus glutamine synthetase (glnA) gene, complete cds.
Length = 2463
Score = 42.1 bits (21), Expect = 0.26
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 928 ggttatgtagcggattgcaaatccgtcta 956
||||||| ||||||||||||||||||||
Sbjct: 2307 ggttatgctgcggattgcaaatccgtcta 2279
gi|2150137|gb|AF002991|HSAF002991 Homo sapiens cosmid, complete sequence [Homo sapiens]
Length = 37165
Score = 40.1 bits (20), Expect = 1.0
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 144 attggtcttttatctgcctgtcacctgg 171
|||||||| |||||||||||| ||||||
Sbjct: 13453 attggtctcttatctgcctgtaacctgg 13480
gi|3688143|emb|Y17083|AIY17083 Alternaria infectoria gene encoding beta-tubulin, isolate 4A
Length = 1070
Score = 40.1 bits (20), Expect = 1.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 142 gtattggtcttttatctgcc 161
||||||||||||||||||||
Sbjct: 52 gtattggtcttttatctgcc 33
gi|3688137|emb|Y17075|AIY17075 Alternaria infectoria gene encoding beta-tubulin, isolate 4B
Length = 1070
Score = 40.1 bits (20), Expect = 1.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 142 gtattggtcttttatctgcc 161
||||||||||||||||||||
Sbjct: 52 gtattggtcttttatctgcc 33
gi|3688139|emb|Y17076|ALY17076 Alternaria linicola gene encoding beta-tubulin, isolate 3B
Length = 1069
Score = 40.1 bits (20), Expect = 1.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 142 gtattggtcttttatctgcc 161
||||||||||||||||||||
Sbjct: 52 gtattggtcttttatctgcc 33
gi|3688167|emb|Y17081|ASY17081 Alternaria solani gene encoding beta-tubulin, isolate CBS 161.77
Length = 1069
Score = 40.1 bits (20), Expect = 1.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 142 gtattggtcttttatctgcc 161
||||||||||||||||||||
Sbjct: 52 gtattggtcttttatctgcc 33
gi|3688147|emb|Y17085|ALY17085 Alternaria linicola gene encoding beta-tubulin, isolate 3A
Length = 1069
Score = 40.1 bits (20), Expect = 1.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 142 gtattggtcttttatctgcc 161
||||||||||||||||||||
Sbjct: 52 gtattggtcttttatctgcc 33
gi|3688153|emb|Y17078|ASY17078 Alternaria solani gene encoding beta-tubulin, isolate ICMP 6519-79
Length = 1069
Score = 40.1 bits (20), Expect = 1.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 142 gtattggtcttttatctgcc 161
||||||||||||||||||||
Sbjct: 52 gtattggtcttttatctgcc 33
gi|3688163|emb|Y17079|ASY17079 Alternaria solani gene encoding beta-tubulin, isolate CBS 110.41
Length = 1069
Score = 40.1 bits (20), Expect = 1.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 142 gtattggtcttttatctgcc 161
||||||||||||||||||||
Sbjct: 52 gtattggtcttttatctgcc 33
gi|3688165|emb|Y17080|ASY17080 Alternaria solani gene encoding beta-tubulin, isolate CBS 105.51
Length = 1069
Score = 40.1 bits (20), Expect = 1.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 142 gtattggtcttttatctgcc 161
||||||||||||||||||||
Sbjct: 52 gtattggtcttttatctgcc 33
gi|2822174|gb|AC004079|AC004079 Homo sapiens PAC clone DJ0167F23 from 7p15, complete sequence [Homo
sapiens]
Length = 102717
Score = 38.2 bits (19), Expect = 4.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 548 ttttctttgtggctgcggt 566
|||||||||||||||||||
Sbjct: 63605 ttttctttgtggctgcggt 63587
gi|4263636|gb|AC005150|AC005150 Homo sapiens chromosome 4 clone B55B24 map 4q25, complete sequence
[Homo sapiens]
Length = 158502
Score = 38.2 bits (19), Expect = 4.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 139 tttgtattggtcttttatc 157
|||||||||||||||||||
Sbjct: 31156 tttgtattggtcttttatc 31138
gi|561532|emb|X78811|RN17BHD1 R.norvegicus mRNA for 17-beta-hydroxysteroid dehydrogenase type 1
Length = 1160
Score = 38.2 bits (19), Expect = 4.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 884 atgtctggctgaaaggcctgaag 906
||||||||| |||||||||||||
Sbjct: 389 atgtctggcagaaaggcctgaag 367
gi|1684742|emb|Y09534|RLSPRLVCP R.leguminosarum Symbiosis Plasmid DNA, rlvCP gene
Length = 3696
Score = 38.2 bits (19), Expect = 4.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 706 aatgcaacgcatcgaacgg 724
|||||||||||||||||||
Sbjct: 1765 aatgcaacgcatcgaacgg 1783
gi|310644|gb|M90544|STYRESM Salmonella typhimurium adenine-methyltransferase (mod) and
restriction endonuclease (res)
Length = 6287
Score = 38.2 bits (19), Expect = 4.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 645 ttttcagcaaacgatcaaaagtg 667
||||||||||||| |||||||||
Sbjct: 3560 ttttcagcaaacgctcaaaagtg 3538
gi|187058|gb|M38684|HUMLD1 Human formin (FMN) gene, exon 1.
Length = 2250
Score = 38.2 bits (19), Expect = 4.0
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 575 tgtggtcaatgttgcaatatttg 597
|||||||| ||||||||||||||
Sbjct: 1938 tgtggtcagtgttgcaatatttg 1960
gi|2772525|gb|AC003994|AC003994 Mouse cosmid ma53a271 from 14D1-D2 (Mouse T-Cell Receptor Alpha Locus),
complete sequence [Mus musculus]
Length = 43576
Score = 38.2 bits (19), Expect = 4.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 135 attctttgtattggtcttt 153
|||||||||||||||||||
Sbjct: 15458 attctttgtattggtcttt 15476
gi|1321938|emb|X97754|RNBOHSTDH R.norvegicus mRNA for 17-beta-hydroxysteroid dehydrogenase type I
Length = 1432
Score = 38.2 bits (19), Expect = 4.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 884 atgtctggctgaaaggcctgaag 906
||||||||| |||||||||||||
Sbjct: 429 atgtctggcagaaaggcctgaag 407
gi|3928786|gb|AF059284|AF059284 Strongylocentrotus purpuratus factor B SpBf (Sp152) mRNA, complete
cds
Length = 3136
Score = 38.2 bits (19), Expect = 4.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 363 ggcggcaacgatgatcgcc 381
|||||||||||||||||||
Sbjct: 134 ggcggcaacgatgatcgcc 116
gi|2370071|emb|Z98941|HS204E5 Human DNA sequence from PAC 204E5 on chromosome 12. Contains exon
similar to Wilms' Tumour-related protein QM-like P2X-like
receptor, ATP ligand gated ion channel, ESTs, CpG island
Length = 129969
Score = 38.2 bits (19), Expect = 4.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 661 aaaagtggtgaaaaatatc 679
|||||||||||||||||||
Sbjct: 29183 aaaagtggtgaaaaatatc 29201
gi|2957158|gb|AC004405|AC004405 Mus musculus ma36a240, complete sequence [Mus musculus]
Length = 43178
Score = 38.2 bits (19), Expect = 4.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 135 attctttgtattggtcttt 153
|||||||||||||||||||
Sbjct: 14551 attctttgtattggtcttt 14569
gi|3043508|emb|X98038|RN17BHD R.norvegicus gene encoding 17 beta-hydroxysteroid dehydrogenase type
1
Length = 5762
Score = 38.2 bits (19), Expect = 4.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 884 atgtctggctgaaaggcctgaag 906
||||||||| |||||||||||||
Sbjct: 2674 atgtctggcagaaaggcctgaag 2652
gi|472895|emb|X77484|CBMGM C.barkeri mgm gene
Length = 2364
Score = 38.2 bits (19), Expect = 4.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 358 ttaccggcggcaacgatga 376
|||||||||||||||||||
Sbjct: 1686 ttaccggcggcaacgatga 1668
gi|780654|gb|U23040|RLU23040 Rhizobium leguminosarum bv. viciae putative glycerol-3-phosphate
transport protein (ugpC) gene, partial cds, and
chemoreceptor protein (mcpA), putative
2-hydroxychromene-2-carboxylate isomerase, and putative
alcohol dehydro...
Length = 3931
Score = 38.2 bits (19), Expect = 4.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 706 aatgcaacgcatcgaacgg 724
|||||||||||||||||||
Sbjct: 1766 aatgcaacgcatcgaacgg 1784
CPU time: 0.15 user secs. 0.02 sys. secs 0.17 total secs.
Database: Non-redundant GenBank+EMBL+DDBJ+PDB sequences
Posted date: Oct 8, 1999 4:58 PM
Number of letters in database: 1,336,120,306
Number of sequences in database: 482,057
Lambda K H
1.37 0.711 0.00
Gapped
Lambda K H
1.37 0.711 4.94e-324
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 520194
Number of Sequences: 482057
Number of extensions: 520194
Number of successful extensions: 35604
Number of sequences better than 10.0: 35
length of query: 956
length of database: 1,336,120,306
effective HSP length: 21
effective length of query: 935
effective length of database: 1,325,997,109
effective search space: 1239807296915
effective search space used: 1239807296915
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 25 (49.6 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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