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The Sanger Centre blast servers are

BLASTP 2.0a13MP-WashU [10-Jun-1997] [Build 23:08:12 Jun 10 1997]

Reference:  Gish, Warren (1994-1997).  unpublished.
Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W. Myers, and David J.
Lipman (1990).  Basic local alignment search tool.  J. Mol. Biol. 215:403-10.

Query=  query_seq
        (247 letters)

Database:  wormpep
           19,126 sequences; 8,161,964 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N
H37A05.1 CE19946 (CAMBRIDGE)                                  357  5.7e-33   1
M01G12.9 CE18072 (CAMBRIDGE)                                   64  0.995     1
F15A8.1  CE09400 (ST. LOUIS)                                   43  0.997     1
Y48A6B.4 CE19187 (CAMBRIDGE)                                   43  0.997     1
F52G3.2  CE10856 (ST. LOUIS)                                   63  0.998     1
C25A1.7B CE08373 (CAMBRIDGE)                                   56  0.99995   1

>H37A05.1 [Full Sequence]  [Webace]  CE19946 (CAMBRIDGE)
          Length = 823

 Score = 357 (125.7 bits), Expect = 5.7e-33, P = 5.7e-33
 Identities = 76/179 (42%), Positives = 116/179 (64%)

Query:    67 IAEPRTEINSNGYKFLYCSARAIGMADLTKGYLQWVSEGGCSLPKGPILLSPSSLFSALH 126
             +AE  T I +NGYK +Y S+RAIG +  TK YL+ V++    LP GP+LLSP+S+ +A  
Sbjct:   586 VAELYTRIKNNGYKMVYLSSRAIGQSHTTKQYLKSVAQDSKQLPDGPVLLSPTSIITAFR 645

Query:   127 REVIEKKPEVFKVACLSDIQQLFLPHGQPFYAAFGNRPNDVFAYRQVGLPESRIFTVNPR 186
             REVIE++PE FK+A L+D++QLF P G PFYA FGNR  DV +Y  V +P +RI  ++P 
Sbjct:   646 REVIERRPEEFKIAALTDLKQLF-PSGNPFYAGFGNRITDVVSYEAVAVPAARILIIDPS 704

Query:   187 GELIQELIKNHKSTYERLG-EVVELLFPPVA---RGPS--TDL-----ANP-EYSNFCYW 234
             G++ +        +Y+ +  + V+ +FPP++   +G +  T+      + P E+SNF +W
Sbjct:   705 GKVKRSDSSGLALSYKSMASDTVDYMFPPLSVHVKGDARKTERLTSTWSKPLEHSNFTHW 764



>M01G12.9 [Full Sequence]  [Webace]  CE18072 (CAMBRIDGE)
          Length = 272

 Score = 64 (22.5 bits), Expect = 5.3, P = 0.99
 Identities = 19/51 (37%), Positives = 26/51 (50%)

Query:    57 NDSCEREVISIAEPRTEINSNG--YKFLYCSARAIGMADLTKGYLQWVSEGG 106
             ND+  + V+    PRT+  SN   Y  LY SA+  G+ D  + Y   V  GG
Sbjct:   154 NDAVTKAVLKAHVPRTQEGSNNSSYSILY-SAQIDGIDDKRQHYEMKVLNGG 204



>F15A8.1 [Full Sequence]  [Webace]  CE09400 (ST. LOUIS)
         Length = 55

 Score = 43 (15.1 bits), Expect = 5.7, P = 1.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query:   196 NHKSTYERLGEVVELLFPPVAR 217
             N  +T  +LGEV++L+ P V +
Sbjct:    15 NAPTTLLQLGEVIKLVLPLVLK 36



>Y48A6B.4 [Full Sequence]  [Webace]  CE19187 (CAMBRIDGE)
          Length = 47

 Score = 43 (15.1 bits), Expect = 5.7, P = 1.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query:   136 VFKVACLSDIQQLFLPHG 153
             VF +  +S +  +FLP G
Sbjct:     8 VFAILAISSVSGIFLPQG 25



>F52G3.2 [Full Sequence]  [Webace]  CE10856 (ST. LOUIS)
         Length = 253

 Score = 63 (22.2 bits), Expect = 6.1, P = 1.0
 Identities = 25/92 (27%), Positives = 45/92 (48%)

Query:    44 PARMCELEGANSANDSCEREVISIAEPRTEINSNGYKF-LYCSARAIGMADLTKGYLQWV 102
             P+ +        AN+S  RE  S+A P  + + +  K+ +  S+ A  + D+  G  Q+ 
Sbjct:   146 PSWLVAANAEQQANNSQAREFPSLAPPANDSDKSNNKWDITSSSLAEKLTDMPNGE-QF- 203

Query:   103 SEGGCSLP-KGPILLSPSSLFSALHREVIEKKPE 135
              EGG  +   GP   + S+  SA + +   +KP+
Sbjct:   204 -EGGVPIRFLGPNTTAASTAESAFNAKSGSQKPQ 236



>C25A1.7B [Full Sequence]  [Webace]  CE08373 (CAMBRIDGE)
          Length = 122

 Score = 56 (19.7 bits), Expect = 9.9, P = 1.0
 Identities = 21/76 (27%), Positives = 36/76 (47%)

Query:   168 FAYRQVGLPESRIFTVNPRGELIQELIKNHKSTYERLGEVVELLFPP-VARGPSTDLANP 226
             F++   G P     T +P  +L+      H ++  R+G+V+E++ PP +     +D    
Sbjct:     6 FSFEFNGEPIHFSITSHPDKDLV------HFNSTGRIGQVIEVIQPPEILSSQLSDQQRV 59

Query:   227 EYSNFCYWREP-LPAVDL 243
             EY        P LP V+L
Sbjct:    60 EYELKSLLGNPELPGVEL 77


Parameters:
  P=6
  B=50
  filter=seg

  ctxfactor=1.00
  E=10

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.138   0.420    same    same    same
               q=9  r=2        0.244  0.0300   0.180

  Query
  Frame  MatID  Length  Eff.Length   E    S W   T  X     E2  S2
   +0      0      247       238      10. 65 3  11 22    0.21 33
                                                  32    0.22 36


Statistics:

  Database:  wormpep
    Title:  wormpep
    Release date:  unknown
    Posted date:  12:33 PM BST Aug 20, 1999
    Format:  BLAST
  # of letters in database:  8,161,964
  # of sequences in database:  19,126
  # of database sequences satisfying E:  6
  No. of states in DFA:  562 (110 KB)
  Total size of DFA:  241 KB (256 KB)
  Time to generate neighborhood:  0.01u 0.01s 0.03t  Elapsed: 00:00:00
  No. of threads or processors used:  6
  Search cpu time:  4.35u 1.10s 5.45t  Elapsed: 00:00:03
  Total cpu time:  4.38u 1.18s 5.56t  Elapsed: 00:00:03
  Start:  Tue Oct 12 23:24:15 1999   End:  Tue Oct 12 23:24:18 1999

---

script last modified : 05-Jan-1999, 13:45:44

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