FASTA-SWAP or FASTA-PAT Search Results
FASTA-SWAP or FASTA-PAT (FASTA-based Pattern database search tools)
are modified versions of the
FASTA
sequence database search tool.
See the FASTA-SWAP and FASTA-PAT
Help Page for a detailed program description.
Istvan Ladunga, Brent A. Wiese, and Randall F. Smith (1995)
Human Genome Sequencing
Center, Baylor College of Medicine, Houston, TX 77030.
Email
FASTA-SWAP searches a protein pattern database
FASTA-SWAP version 1.0, Dec. 1995,
FASTA version 2.0u August, 1995
Please cite: I. Ladunga, B. Wiese & R.F. Smith (1996), submitted
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
/tmp/fastapat.seq.26533 : 345 aa
>GI||SP|Q|DBP_HUMAND-BINDINGPROTEIN(DBP)(ALBUMINDB
X-BINDINGPRTEINTAXREBMARPVSDRTPAxxxxxxxxxxxxxxxxxxGLRSLLQGTS
KPKEPASCLLKEKERKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxERTLPFGDVEYVDLDAFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxGTASGHRAGLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSIPG
HETFDPRRHRFSEEELKPQPIMKKARKIQVPEEQKDEKYWSRRYKNNEAAKRSRDARRLK
ENQISVRAAFLEKENALLRQEVVAVRQELSHYRAVLSRYQAQHGAL
vs EC Database library
searching /local/dot5/sl_home/beauty/seqdb/comb-db/ec 11 library
one = represents 1 library sequences
z-opt E()
< 20 0 0 :
22 1 0 :=
24 2 0 :==
26 2 0 :==
28 2 0 :==
30 2 1 :*=
32 10 4 :===*======
34 11 11 :==========*
36 21 22 :=====================*
38 30 36 :============================== *
40 48 51 :================================================ *
42 44 62 :============================================ *
44 35 68 :=================================== *
46 28 70 :============================ *
48 31 67 :=============================== *
50 30 61 :============================== *
52 45 53 :============================================= *
54 46 46 :=============================================*
56 52 38 :=====================================*==============
58 51 31 :==============================*====================
60 44 25 :========================*===================
62 44 20 :===================*========================
64 37 16 :===============*=====================
66 31 13 :============*==================
68 21 10 :=========*===========
70 21 8 :=======*=============
72 11 6 :=====*=====
74 14 5 :====*=========
76 9 4 :===*=====
78 5 3 :==*==
80 5 2 :=*===
82 3 2 :=*=
84 1 1 :*
86 1 1 :*
88 0 1 :*
90 0 1 :*
92 0 0 :
94 1 0 :=
96 0 0 :
98 0 0 :
100 0 0 :
102 0 0 :
104 0 0 :
106 1 0 :=
108 0 0 :
110 0 0 :
112 0 0 :
114 0 0 :
116 0 0 :
118 0 0 :
>120 0 0 :
850743 positions in 1625 patterns
statistics extrapolated from 740 to 740 patterns
Kolmogorov-Smirnov statistic: 0.2202 (N= 28) at 52
results sorted and z-values calculated from opt score
740 scores better than 1 saved, ktup: 1, variable pamfact
gap penalties: -100,-10
joining threshold: 83, optimization threshold: 50, width: 32
scan time: 0:02:01
The best scores are: opt z-sc E(740)
942 glycerol-3-phosphate sn-glycerol-3-phosphate acylt 761 106.5 0.30
9_3 protein-tyrosine 1c 2c corkscrew phosphatase 3.1.3 634 93.8 1.50
573 oleoyl-acyl oleoyl-acyl-carrier carrier protein hy 567 85.6 4.35
1090 type ii deoxyribonuclease enzyme ec 3.1.21.4 endo 559 83.9 5.35
2_16 myosin myosin-light-chain light chain ec kinase 2 464 83.1 5.93
1063 glycosaminoglycan n-heparan n-acetylglucosaminyl 486 83.0 6.02
16_10 dipeptidyl-peptidase i cathepsin ec precursor c 524 82.8 6.22
295 rna polymerase alpha subunit nucleocapsid phosphop 514 81.4 7.39
12_3 glyceraldehyde glyceraldehyde-3-phosphate 3-phosp 519 80.6 8.18
483 aspartate-semialdehyde dehydrogenase ec asa 1.2.1. 514 80.6 8.20
828 protein-pii uridylyltransferase pii uridylyl-trans 450 80.0 8.83
3_23 interferon-induced serine/threonine-protein doubl 482 79.7 9.15
846 1l-myo-inositol-1-phosphate d-myo-inositol-3-phosp 475 79.4 9.57
712 aspartate-semialdehyde dehydrogenase asa ec 1.2.1. 498 79.3 9.69
614 flavonol udp-glucose 3-o-glucosyltransferase bronz 482 79.2 9.73
942 glycerol-3-phosphate sn-glycerol-3-phosphate acylt (828 aa)
initn: opt: 761 z-score: 106.5 E(): 0.3
Smith-Waterman score: 778; 14.8% identity in 358 aa overlap
19.0% noncontradicting positions, 4.2% class identity
10 20 30 40 50 60
GI||SP XBINDINGPRTEINTAXREBMARPVSDRTPAXXXXXXXXXXXXXXXXXXGLRSLLQGTSK
R + T L L + S
942 MTFCYPCRAFALLTRGFTSFMSGWPRIYYKLLNLPLSILVKSKSI
10 20 30 40
70 80 90 100 110
GI||SP PKEPASCLLKEKER----------KXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
P +PA L + R----------
942 PADPAPELGLDTSRPgIMYVLPYNSKADLLTLRAQCLAHDLPDPLEPLEIDGTLLPRYVF
s
50 60 70 80 90 100
120 130 140 150 160
GI||SP XXXXXXXXXXXXXXXERTLPFGDVEYVDL-------DAFXXXXXXXXXXXXXXXXXXXXX
E F D--Y DL-------D+
942 IHGGPRVFTYYTPKEESIKLFHD--YLDLHRSNPNLDVQMVPVSVMFGRAPGREKGEVNP
110 120 130 140 150 160
170 180 190 200 210 220
GI||SP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTASGHRAGLTSRDTPSPVDPDTVEVLM
A H T + V------ M
942 PLRMLNGVQKFFAVLWLGRDSFVRFSPSVSLRRMADEHGTDKTIAQKLARV------ARM
170 180 190 200 210
230 240 250 260 270 280
GI||SP TFEPDPADLALSSIPGHETFDPRRHRFSEEELKPQPIMKKARKIQVPEEQKDEKYWSRRY
F----A L+++ ---P R+ L I K -----V +E + K +
942 HF----ARQRLAAVGPRL---PARQDLFNKLLASRAIAKA-----VEDEARSKKISHEKA
220 230 240 250 260
290 300 310 320
GI||SP KNNE-------AAKRSRDARRLKE-------NQ----ISVRAAFLEKENALLRQEVVAVR
+ N -------AA S + RL +-------N ----I+V A ++ A +E V V
942 QQNAIALMEEIAANFSYEMIRLTDRILGFTWNRLYQGINVHNAERVRQLAHDGHELVYVP
270 280 290 300 310 320
330 340
GI||SP QELSHYRAVLSRYQAQHGAL
SH L Y H L
942 CHRSHMDYLLLSYVLYHQGLVPPHIAAGINLNFWPAGPIFRRLGAFFIRRTFKGNKLYST
330 340 350 360 370 380
9_3 protein-tyrosine 1c 2c corkscrew phosphatase 3.1.3 (768 aa)
initn: opt: 634 z-score: 93.8 E(): 1.5
Smith-Waterman score: 634; 18.5% identity in 65 aa overlap
35.4% noncontradicting positions, 16.9% class identity
220 230 240 250 260 270
GI||SP PSPVDPDTVEVLMTFEPDPADLALSSIPGHETFDPRRHRFSEEELKPQPIMKKARKIQVP
d +l Et D r+ F EE Q k - q
9_3 aflqLrQPlnaTRinAAdInaRVrqLnKlaEseDkaKaGFWEEFEsLQqQdcrn-lhqRn
tvvh k fyt vt e en ee s kq tt tr q t k eskd tfs l
y y g s l v g v l y k
210 220 230 240 250 260
280 290 300 310 320 330
GI||SP EEQKDEKYWSRRYKNNEAAKRSRDARRLKENQISVRAAFLEKENALLRQEVVAVRQELSH
E qk E RYkN sR e i v l ==
9_3 EGqrqENrnKNRYrNILPfDHsRViLqdrdhneagadYINANiirnqldgddnNak ==
ykp kg k y t k hggepsipvse yvklefetkce ms
l v l v s v mpptl ply s
s
270 280 290 300 310 320
340
GI||SP YRAVLSRYQAQHGAL
===============
9_3 ============================================================
573 oleoyl-acyl oleoyl-acyl-carrier carrier protein hy (398 aa)
initn: opt: 567 z-score: 85.6 E(): 4.3
Smith-Waterman score: 680; 9.0% identity in 277 aa overlap
26.0% noncontradicting positions, 17.0% class identity
10 20 30
GI||SP XBINDINGPRTEINTAXREBMARPVSDRTPAXXXXXXXX
rt i r vs rtp =
573 SrgaP==AAaAtaaknnanaknnrgalphfrdigqarirrrrngairrrqarkraraP=l
kpl p vmlmlscsgtdhlhtfsfskspilciflnsdsiflcnsplsspkld t
ttty vv stfvyt stssffspvk stlsvss spv tvs v
t v sv t y v ts w
10 20 30 40 50
40 50 60 70 80 90
GI||SP XXXXXXXXXXGLRSLLQGTSKPKE--PASCLLKEKERKXXXXXXXXXXXXXXXXXXXXXX
g L k E--==Sc l ek R
573 raaasadqnaqsagnLrqadaEiEe===ScslanrlRaGrLmEDGlSYKErFiiRcYEVG
lsvrtnevgsgvlvg keeqk v k stpgdkf l s t y k vv s
m nygg pti p s e e m
f i v
60 70 80 90 100 110
100 110 120 130 140 150
GI||SP XXXXXXXXXXXXXXXXXXXXXXXXXXXXERTLPFGDVEYVDLDAFXXXXXXXXXXXXXXX
------------- D F
573 INKTATiETIANLLQEVacNHaQgcGFS-------------TDGFATTlTMRKLHLIWVT
v gg v kv p
s t
120 130 140 150 160
160 170 180 190 200 210
GI||SP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTASGHRAGLTSRDTPSPV--D
Asg G---R T V--+
573 aRMHIEIYrYPAWSDViEIETWcQgEGriGTRRDWIirDhAnnEVIG---RATSKWVMMN
s k v v s kv lk f sd
m s tg
y
170 180 190 200 210 220
220 230 240 250 260 270
GI||SP PDTVEVLMTFEPDPADLALSSIPGHETFDPRRHRFSEEELKPQPIMKKARKIQVPEEQKD
DT- L d d L------- F Pr R s E-k mKK K++ P e
573 qDT-RRLQrVnDdVRdEYL-------VFCPrelRLaFPE-eNnnSlKKIaKLEDPAqhSr
e k s e e ktp s k tk m p ey m
t s s t
230 240 250 260 270
280 290 300 310 320 330
GI||SP EKYWSRRYKNNEAAKRSRDARRLKENQISVRAAFLEKENALLRQEVVAVRQELSHYRAVL
RR + + a + E + + Q +
573 LeLkPRRaDLDMNqHVNNVaYIGWaLESIPqEiidTHELqaITLDYRRECQrDDiVDSLT
g s s k t v k vly et q v
v p v h
280 290 300 310 320 330
1090 type ii deoxyribonuclease enzyme ec 3.1.21.4 endo (333 aa)
initn: opt: 559 z-score: 83.9 E(): 5.4
Smith-Waterman score: 567; 13.5% identity in 327 aa overlap
21.7% noncontradicting positions, 8.3% class identity
10 20 30 40 50
GI||SP XBINDIN--GPRTEINTAXREBMARPVSDRTPAXXXXXXXXXXXXXXXXXXGLRSLLQG
N In-- P+ +i+ A R v-------- L L
1090 mpNKInFPePKqQiDFAFaLKRFRai--------YLQnALLETVRDMDIaaLDrQLae
tt v p l v s gv s ve t sk
10 20 30 40 50
60 70 80 90 100 110
GI||SP TSKPKEPASCLLKEKERKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
p + As L R----
1090 YVnkADLAgTLAqYGLR----AELLFaVPalLEaNPhLLGYYRLLMGYSQKEFYGrDKGF
pp s t p vv t f k
60 70 80 90 100
120 130 140 150 160 170
GI||SP XXXXXXXXERTLPFGDVEYVDLD----AFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
E G v dl ----AF
1090 naGCFKSMEeKGnaGKaAkadihdLChAFCatASaLLaGVGPLRiSRELLDDLTLLTVGP
gv v ki v vpklse v sv s q v
110 120 130 140 150 160
180 190 200 210 220 230
GI||SP XXXXXXXXXXXXXXXXXXXXXXGTASGHRAGLTSRDTPSPVDPDT-VEVLMTFEPDPADL
H-A R++ V+ T- VL+ F PDP-D+
1090 QLRGGANNQRGADGIVLVFEIIrEIVaH-AaAEVREnAIEVNSATGRnVLIEFAPDP-DI
k s v s p
170 180 190 200 210 220
240 250 260 270 280 290
GI||SP ALSSIPGHETFDPRRHRFSEEELKPQPIMKKARKIQVPEEQKDEKYWSRRY-KNNEAAKR
+ -----------------EE+ q---- R +-V E K S +-+ EA K
1090 IIR-----------------EEMend----nYRNV-VAIEVKSGTDVSNIHNRIGEAEKS
slq h
230 240 250 260
300 310 320 330 340
GI||SP SRDARRL--KENQISVRAAFLEKENALLRQEVVAVRQELSHYRAVLSRYQAQHGAL
AR l-- E V + L+ A--R E + S L
1090 HQKARqhGfTECWTVVNVgRLDMdKA--RkESPSTnRFYSiTaLSLRaGdqYaDFRRRVL
gl y s v s d l d e ee e
270 280 290 300 310 320
GI||SP
1090 SLTAIpAaPan
s r tp
330
2_16 myosin myosin-light-chain light chain ec kinase 2 (1718 aa)
initn: opt: 464 z-score: 83.1 E(): 5.9
Smith-Waterman score: 756; 9.3% identity in 343 aa overlap
25.9% noncontradicting positions, 16.6% class identity
10 20
GI||SP XBINDINGPRTEIN----TAXREBMARPVSDR
++D g tE+n----T E ---VSD
2_16 VYGiSEPSQESEltkVGEKqEEeLKdEeaElSDDdeKEpEVnYrTVTiNTEQK---VSDf
t vvt p p e ve v eg t d q v v
1210 1220 1230 1240 1250
30 40 50 60 70
GI||SP TPAXXXXXXXXXXXXXXXXXXGLRSLLQGTSKPKEPASCLLKEKE--------------R
l g k a----KeKE--------------r
2_16 mnieEaLGgGKFGaVcrctErkTGlilAaKfiKaqsa----KdKEnirdEIeiMNcLnHr
ydsk r s q ftlv ks kkw g vf kytp e mvlq gv q h p
v ml s
1260 1270 1280 1290 1300 1310
80 90 100 110 120 130
GI||SP KXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERTLPFGDV
k e l
2_16 nLiQcyaAiEekanIilflEiieGGELFERIiDEDfqLTErdcikfmRQIcdGiefiHKq
k v lvd f tphe vmvm mvs v ye vetmvyv se vlym m
s s y h
1320 1330 1340 1350 1360 1370
140 150 160 170 180 190
GI||SP EYVDLDAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
v LD
2_16 rilHLDLKPENIlCVNkTGhriKiIDFGLARRlnnaekLKVnFGTPEFlaPEViNYdqIg
gvv m t tlv l yepngs l vs v ep s
s s
1380 1390 1400 1410 1420 1430
200 210 220 230 240
GI||SP XGT---ASGHRA-GLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSIPGHETF----DPR
T---+ G - L S +P D Dt-E L d ------ EtF----D
2_16 daTDMWSiGVIcYiLlSGLSPFlGDnDn-ETLaNVlSanWdF------DdEaFdaiSDdA
ye l t m v m d t n t gt y e t eev e
k
1440 1450 1460 1470 1480
250 260 270 280 290 300
GI||SP RHRFSEEELKPQ-PIMKKARKIQVPEEQ---KDEKYWSRRYKNNEAAKRSRDARRLKENQ
+ S K q- m a +q P q---kd K rr k+ K+ Rr k n
2_16 KDFiSNLikKdqgaRlnaaQCLaHPWLnNLAedaKrcnarllSqdrlKKYlarRrWqKng
v lt emkn mdce q q kkt nmerkkk kilm mmk k k tf
v ss s t m
1490 1500 1510 1520 1530 1540
310 320 330 340
GI||SP ISVRAAFLEKENALLRQEVVAVRQELSHYRAVLSRYQAQHGAL
i+VrAa k a S + + ==
2_16 nAVrAanRlkkiamigalmargaSggSPTSPinAdrlEnEd====AFLEaVAEEKPHVKP
h s ig fssmssssgmsglks ts lt ekv t e e
i v
1550 1560 1570 1580 1590 1600
1063 glycosaminoglycan n-heparan n-acetylglucosaminyl (888 aa)
initn: opt: 486 z-score: 83.0 E(): 6
Smith-Waterman score: 535; 14.2% identity in 134 aa overlap
26.1% noncontradicting positions, 11.9% class identity
170 180 190 200 210 220
GI||SP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTASGHRAGLTSRDTPSPVDPDTVEVLMTFE
==== + Sg ag p==v p v t
1063 FcLfSmgflAYYlsgsnralEPl====aDaSeSdagadPgPaaPp==lPirPqrapapsR
s v vfvs vytwpkgk s g c s gcsgg p vr s v pk vqpvett
30 40 50 60 70
230 240 250 260 270
GI||SP PDPADL----ALSSIPGHE---TFDPRRHRFSEEELKPQPIM------KKARKIQVPEEQ
dP L----+l S G+E--- + R r+s E M------ R + v E
1063 TdPlVLVFVESaYSQLGQEiVAILESSRFrYrTEiAPGrGDMPTLTDhgrGRfaLiIYEN
e v l v k s l k kth yv v
80 90 100 110 120 130
280 290 300 310 320 330
GI||SP KDEKYWSRRYKNNEAAKRSRDARRLKENQISVRAAFLEKENALLRQEVVAVRQELSHYRA
------ +Y N +A R r e + + F +En+LL + L
1063 ------iLKYVNLDAWnRELLDrYCVaYGVGIIGFFrArEnSLLSAQLKGFPLFLHSNLG
l s k e k n h
140 150 160 170 180 190
340
GI||SP VLSRYQAQHGAL
L
1063 LrDcqiNPkaPLLhlTRPSrlEkGpLPGdDWTiFQSNHSTYEPVLiAkhRpaE=SiP===
k ysv ss yv ev p v e v l st ss m
200 210 220 230 240
16_10 dipeptidyl-peptidase i cathepsin ec precursor c (468 aa)
initn: opt: 524 z-score: 82.8 E(): 6.2
Smith-Waterman score: 595; 14.9% identity in 355 aa overlap
21.7% noncontradicting positions, 6.8% class identity
10 20 30 40 50 60
GI||SP XBINDINGPRTEINTAXREBMARPVSDRTPAXXXXXXXXXXXXXXXXXXGLRSLLQGTSK
+ VS TPA RS + +--
16_10 MGPWTHSLRAALLLVLLGVCTVSSDTPANCTYPDLLGTWVFQVGPRHPRSHINCS--
10 20 30 40 50
70 80 90 100 110
GI||SP PKEPASCLLKEKE----RKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
EP ---l EK ----+K
16_10 VMEPT---dEEKVVIHLKKLDTAYDEVGNSGYFTLIYNQGFEIVLNDYKWFAFFKYEVKG
h
l
60 70 80 90 100 110
120 130 140 150 160 170
GI||SP XXXXXXXXXERTLPFGDVEYVDLDAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
T Dv + F
16_10 SRAISYCHETMTGWVHDyLGRNWACFVGKKMANHSEKVYVNVAHLGGLQEKYSERLYSHn
v h
120 130 140 150 160 170
180 190 200 210 220
GI||SP XXXXXXXXXXXXXXXXXXXGT-----------ASGHRAGLTSRDTPSPVDPDTVEVLMTF
----------- SGH-+G R P+P+---T E+
16_10 HNFVKAINSVQKSWTATTYrrYEKLSIRDLIRRSGH-SGRILRPKPAPI---TDEIQQQI
ee
180 190 200 210 220
230 240 250 260 270
GI||SP EPDPADLALSSIPGHETFDPRRHRFSEEELKPQPI--MKKAR------KIQVPEEQKDEK
P ++ G P R+ S --M AR------ Q P E
16_10 LSLPESWDWRNVRGINFVSPVRNQESCGSCYSFASiGMLEARIRILTNNSQTPILSPQEV
l
230 240 250 260 270 280
280 290 300 310 320
GI||SP YWSRRYKNN--------EAAKRSRDARRLKEN---QISVRAAFLEKENALLRQEVVAVRQ
Y -------- A K + D EN--- + A KEN L--------R
16_10 VSCSPYAQGCDGGFPYLIAGKYAQDFGVVEENCFPYTATDAPCKPKENCL--------RY
290 300 310 320 330 340
330 340
GI||SP ELSHYRAVLSRYQAQHGAL
S Y V Y + AL
16_10 YSSEYYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPF
350 360 370 380 390 400
295 rna polymerase alpha subunit nucleocapsid phosphop (422 aa)
initn: opt: 514 z-score: 81.4 E(): 7.4
Smith-Waterman score: 514; 4.3% identity in 70 aa overlap
42.9% noncontradicting positions, 38.6% class identity
170 180 190 200 210 220
GI||SP XXXXXXXXXXXXXXXXXXXXXXXXXXXGTASGHRAGLTSRDTPSPVDPDTVEVLMTFEPD
sg aG t Sp pd vl t p
295 aerqqar araapgnrdidangalaGqeerprlqaGaihaahrSrqqqanlnanaddaqa
qtiienq sniqspdqgtqedirfh lkiesqsls vtlgvlq nlllddklvhvehvpq
wvp e vkt sl s egstws smmk gyp ph pl gpspgssp l gi l
t g f t gs vy t k s p l l t p tp k
x x x x x x x x
190 200 210 220 230 240
230 240 250 260 270 280
GI||SP PADLALSSIPGHETFDPRRHRFSEEELKPQPIMKKARKIQVPEEQKDEKYWSRRYKNNEA
pad al i e d R r ---e k imk iq s
295 lannanaiinairaidaRlnri---dqqlDrilaqqaliqnirndiqqiKaglAtiEani
fvdfvqemldllenleq mdql egkv lvmlsgnmviqlkselsgl gsm vl gll
p es l memmkgmsl vqhv t k ktsss pmm mtsv tts m mm
s iy k stv s sk y s t t ttt tvt vv v
x x x x
250 260 270 280 290 300
290 300 310 320 330 340
GI||SP AKRSRDARRLKENQISVRAAFLEKENALLRQEVVAVRQELSHYRAVLSRYQAQHGAL
a n a l e v s + aq a
295 amiKIlDPgnannsplrdiraearnhaiiiaengndgkladqdneialneLarPiahgre
gtm m scpsgvsvdelnrgledvptlvpgpfdgpffsqeedllsmdk sq tqkpsk
t v t tk t esv ksfhq vvv s stspspstegggmmt p vlsstp
v v s tpss t t v tvgssit y s pt v
xx x x xxx x
310 320 330 340 350 360
12_3 glyceraldehyde glyceraldehyde-3-phosphate 3-phosp (344 aa)
initn: opt: 519 z-score: 80.6 E(): 8.2
Smith-Waterman score: 519; 4.7% identity in 211 aa overlap
26.5% noncontradicting positions, 21.8% class identity
10 20 30 40 50 60
GI||SP XBINDINGPRTEINTAXREBMARPVSDRTPAXXXXXXXXXXXXXXXXXXGLRSLLQGTSK
+ + iN R--+ R V =R = l llq S
12_3 laklKVGiNGFGR--IGRLVl=RaaenngnidiVaIND=lidlnnlaYllqhDSn
mgms v t lgivkpkvef g ftppdimv mfky t
v lf ss v vs ly
10 20 30 40 50
70 80 90 100 110 120
GI||SP PKEPASCLLKEKERKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
s k ke k
12_3 hGklrgdqVdaendgiiinGnfIacfaernaanikWgaaGAdiiVEcTGlfTdmEgaqaH
y pfhshs efkdgklvvd hp piyqvkdpkelp kdl eyv s fy sp ksgk
pwlt k te s ks tvvs e sk kk v ts s
60 70 80 90 100 110
130 140 150 160 170
GI||SP XXXXXERTL---PFGDVEYVDLDAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
r l---P gd v
12_3 LdaGAKrViISAPaadadRmrmilmnVNddllDnnldtIiSnASCTTNCLAPiAKainDn
qg k l sgepp vktlvyg hekf gskkv v v l vlh s
tk f v ty p m
120 130 140 150 160 170
180 190 200 210 220 230
GI||SP XXXXXXXXXXXXXXXXXXGTASGHRAGL--TSRDTPSPVDPDTVEVLMTFEPDPADLALS
t+ G r l-- sR + + P t + +L
12_3 FGieeGlMTTiHAiTaTQklVDGPrgKdlRagRaAaqNIIPasTGAAKAialViPELdGK
ltv t v m g pt sk lw ds g le ht vgk l k
v y s g s s
180 190 200 210 220 230
240 250 260 270 280 290
GI||SP SIPGHETFDPRRHRFSEEELKPQPIMKKARKIQVPEEQKDEKYWSRRYKNNEAAKRSRDA
e k k v + e s
12_3 LkGhAqRVPiangSVtdLTcrlaeaakaddinaalKQAsenneaGIlGYTdeqiVSsDin
t m f tkdv ve fkfekktsyeevcnvm ttgplk f ehev t fq
vpt y ts pvt k kk v s s i
240 250 260 270 280 290
483 aspartate-semialdehyde dehydrogenase ec asa 1.2.1. (403 aa)
initn: opt: 514 z-score: 80.6 E(): 8.2
Smith-Waterman score: 514; 2.2% identity in 274 aa overlap
37.6% noncontradicting positions, 35.4% class identity
10 20 30 40 50 60
GI||SP XBINDINGPRTEINTAXREBMARPVSDRTPAXXXXXXXXXXXXXXXXXXGLRSLLQGTSK
n a rebm drt---- = G ==== t k
483 MarqlnaailGATGagrqrmrnqLadrn----headelrll=aSeRaaGrk====irfr
gqgkhigvf qvgeqfiql qqse lphfkvkff s k se kt lnwn
sgkfiv v s tt let ee t f mts fv p tv yqyk
mmtt v lv v t t s ve
x x x
10 20 30 40 50
70 80 90 100 110 120
GI||SP PKEPASCLLKEKERKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
ke -- e e =====
483 dqdird--pqnaeda=====deddleacnialfgadadaaaaqakraaaaGaaiidNaka
qkeleh veditqi ekegfkdidvvfsslggelsrqiepefmer iivvs ssn
gttvl e tt kpffwsqvh sm qkl i vk vt t h
t l v ssss e ty gvf l v
x x x x x x x
60 70 80 90 100
130 140 150 160 170 180
GI||SP XXXXXERTLPFGDVEYVDLDAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
e L V dldaf ==========
483 fRrndniPLiVpeVNaaaraaranrLaka==========IIanpNCsTaaalaaLePird
w qdqdt v sv eedidefrqn dtn ccs t iqlmpp k lhq
y keeev pfhlhivghk v g i mgmvvv ie
m p s k v ks yk
x x x x
110 120 130 140 150
190 200 210 220 230
GI||SP XXXXXXXXXXXXXXXGTASGHRAGLTSRDTPSPVDPDTVE------VLMTFEPDP--ADL
= + sG a t pv d ve------ lm epdp--ad+
483 aaG=inaintsslQaiSGaGnaainelarqaaaigndnedleadeaaadaaagnakgadI
ef ldrlhvtty sv s qegvdttygeirelidggvqfkeigqdiqpgdpdkfhqq
kw qkvi is e vk tqkvl hv epvhvhpelmypetqppsip
y e t l k s vkp v k s f sgvgvyvs
x x x x xx x
160 170 180 190 200 210
240 250 260 270 280 290
GI||SP ALSSIPGHETFDPRRHRFSEEELKPQPIMKKARKIQVPEEQKDEKYWSRRYKNNEAAKRS
a + ip f + eelkp k===Ki pee k R a
483 adNaiaqadneqDndegETdedqalraEdr===KilndediqVaaqCnRlaiqdgHaeai
lf clpligqle dgsf kkelkmin sq lmeepell ngh v vpvlfs slcv
y iv f gfm kmtw f im plw tk fgi s k spt fs t s
v y kyt y y t hl m st t
x x x xx x x
220 230 240 250 260
300 310 320 330 340
GI||SP RDARRLKENQISVRAAFLEKENALLRQEVVAVRQELSHYRAVLSRYQAQHGAL
= k ra l ke ==============s v q l
483 nari=nraaadadraqaaiaaa==============agaelqrdadrqiqP qaaaaagg
hief dqddipiedikncleqf dtihvedqikqplf ldrnrdsi
sl t skpppsv qtmdi get q vk legpsh y mpld g k
yv v t ev el k y p t f v t v v s
xx x x x x
270 280 290 300 310
828 protein-pii uridylyltransferase pii uridylyl-trans (902 aa)
initn: opt: 450 z-score: 80.0 E(): 8.8
Smith-Waterman score: 473; 6.6% identity in 290 aa overlap
24.1% noncontradicting positions, 17.6% class identity
30 40 50 60 70 80
GI||SP PVSDRTPAXXXXXXXXXXXXXXXXXXGLRSLLQGTSKPKEPASCLLKEKERKXXXXXXXX
R L = s kep+ ++k+ R
828 LWriRfALHllagRadnRLLFDrQrqiAqrLnY=dgdaneaVERmMqdYfRVtrriaELn
kv y mvvs yed l lsv gl g ssegklp f kk y vlgvs t
280 290 300 310 320 330
90 100 110 120 130 140
GI||SP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERTLPFGDVEYVDLDAFX
rt ------ L F
828 qlllQhFdEaILagdAaerprPindrFQlRdglidlrdaglFqrqPe------AiLriFy
emvf l e v plp dgkve ldee v gtylevthetv met s l em v
340 350 360 370 380
150 160 170 180 190 200
GI||SP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTASGHRA
g hR
828 llarrpaIrGiradTiRqLRdaRrhiddalrrdPeargLFieilrhrqairRnLrrMnRh
tmvhnse t vyst l l hh yllqqpfcni hntk lslfkspggvh g lp h y
390 400 410 420 430 440
210 220 230 240 250 260
GI||SP GLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSIPGHETFDPRRHRFSEEELKPQPIMKK
g+ r P--------------------- s I G+ fD -H ++ +e -+mkk
828 giLGaYlP---------------------qfgHIVGQMQhDLF-HaYTVDaHTir-liln
sv r m ews f i e ln vmkk
450 460 470 480
270 280 290 300
GI||SP ARKIQVPE-EQKD---EKYWSRRYKN---------NEAAK-RSRDARRLKENQISVRAAF
rk pE- qk --- k w r k --------- + aK-R D L- q v a
828 LrklaseElaqrhPLasdlierLPkpELIfiAaLfHDIaKGRGGDHSeL-GAaDalaFaq
esffwp treky cvkvwpk st yl g y g i q vvh ce
490 500 510 520 530 540
310 320 330 340
GI||SP LEKENALLRQEVV-AVRQELSHYRAVLSRYQAQHGAL
l na Q vv- VRq L r ++
828 rHdLnardTQLiaWLVRnHLLMStTAQRrDiqDPqVIkdFAqeVrdqnrLrYLycLTVAD
l g psme vv q v k ls e fq ek qtety d vv
550 560 570 580 590 600
3_23 interferon-induced serine/threonine-protein doubl (554 aa)
initn: opt: 482 z-score: 79.7 E(): 9.1
Smith-Waterman score: 580; 9.3% identity in 259 aa overlap
27.8% noncontradicting positions, 18.5% class identity
30 40 50 60 70
GI||SP SDRTPAXXXXXXXXXXXXXXXXXXGLRSLLQGTSKPKEP---ASCLLKE---KERKXXXX
+ +G SK kE ---A+ L e---kE K
3_23 kYqELpnSGPPHDRRFTFQViIDerEFgEaeGRSKhkEArNAAAKLAVdILnnEnKadch
t k st l gk p gk lt k e dk k vvsp
30 40 50 60 70 80
80 90 100 110 120 130
GI||SP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXER-TLPFGDVEYVD
==== - G eY
3_23 ====TsaceqGLfmGNYIGLiNriAQKKrLsVNYEQCapnsegPqrFhcKCKiGQkeYgi
tnsse sv v sf k t esgvhl eg iy m tm st
90 100 110 120 130 140
140 150 160 170 180 190
GI||SP LDAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTA
====== ======== ++
3_23 GsGsTKQEAKQLAAKeAYqqiL======KSdplsaGs========SnSlVTSTlageSSS
t v l lkl pykts t s v fssf
150 160 170 180
200 210 220 230 240
GI||SP SGHRAGLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSI-PGHETFDPRRHR--------
sg + tS == +p + vlm + a s+-P==== D +r +--------
3_23 egdfSadtSq==SapdSlnSenllmNGLrnNqRKagrklaP====dDmqrnKYTlDaRFn
ssmt ngv e nsg fs ssvft ge k skvsvs p vket v k g
190 200 210 220 230 240
250 260 270 280 290 300
GI||SP --FSEEELKPQPIMKKARKIQVPEEQKDEKYWSRRYK-NNEAAKRSRDARRLKENQISVR
--F e El ++ K + + K--+Y +R K-NnE A r A V
3_23 mDFedIEeIGlGGFGQVFKAKHRIDGK--rYaIKRVKYNnEKAErEVqALAeLnHVNIVq
s ke l s t v t h k k d h
250 260 270 280 290
310 320 330 340
GI||SP AAFLEKENALLRQEVVAVRQELSHYRAVLSRYQAQHGAL
+ ============= s
3_23 YngCWdGfDYDPEhS=============mknsSRsKTrCLFIQMEFCDKGTLEQWirnRr
hs e v t ssdt y k mek n
300 310 320 330 340
846 1l-myo-inositol-1-phosphate d-myo-inositol-3-phosp (542 aa)
initn: opt: 475 z-score: 79.4 E(): 9.6
Smith-Waterman score: 494; 8.1% identity in 186 aa overlap
23.1% noncontradicting positions, 15.1% class identity
30 40 50 60 70 80
GI||SP RPVSDRTPAXXXXXXXXXXXXXXXXXXGLRSLLQGTSKPKEPASCLLKEKERKXXXXXXX
r Sl Q- S k s ---e e
846 LTagpranRegimWsfqeKAKGVqQaNYFGSlTQ-cSsirlGIda---nGndiYAPFnSL
lwviyw ists vtkt k p m s tlkv sf e eev k
90 100 110 120 130 140
90 100 110 120 130 140
GI||SP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERTLPFGDVEYVDLDAF
e P + y D A
846 LPMVnPdeiVfgGWDInnanLadAMqRaqVLdiDLQqrLrakMelmkPLPgIYnPDFIAA
s khf vs sdmd ye g sk ey kq kpy ssvv s y
150 160 170 180 190 200
150 160 170 180 190 200
GI||SP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTASGHR
----TA+ R
846 NQdeRANncIngdeKqnVTTRGKWTHLQRIrrDIrnFKErnaldKViVLW----TANTER
gs qv klpk gq id qe eekve v
210 220 230 240 250
210 220 230 240 250 260
GI||SP AGLTSRDTPSPVDPDTVEVLM-TFEPDPADLALSSIPGHETFDPRRHRFSEEELKPQPIM
----- sp DT+E L+-+ e D a++a Ssi +
846 Ys-----dlspGlNDTMENLLaaierDeaEIaPSsifAaAcIlEGVPfiNGSPQNTFVPG
v evvv v qsvkn he s tly l s m yv
260 270 280 290 300 310
270 280 290 300 310 320
GI||SP KKARKIQVPEEQKDEKYWSRRYKNNEAAKRSRDARRLKENQISVRAAFLEKENALLRQEV
i+ + S K + +K I + L
846 LiqlAehrnslIaGDDlKSGQTKlKSVLadFLVdAGIKPtSIaSYNHLGNNDGmNLSAPq
vem ikegtf g f m vq g v v y k
320 330 340 350 360 370
712 aspartate-semialdehyde dehydrogenase asa ec 1.2.1. (376 aa)
initn: opt: 498 z-score: 79.3 E(): 9.7
Smith-Waterman score: 500; 12.3% identity in 155 aa overlap
25.8% noncontradicting positions, 13.5% class identity
100 110 120 130 140 150
GI||SP XXXXXXXXXXXXXXXXXXXXXXXXXXXXERTLPFGDVEYVDLDAFXXXXXXXXXXXXXXX
tL D + LD
712 VTaQGGDYTneifqaLRdaGWnGiWIDAASsLRMaDDAIIiLDPVNrnVIdaaLnrGirn
c ksvypk es q y t k v qd tng kn vkt
s g p d
80 90 100 110 120 130
160 170 180 190 200
GI||SP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTASGHRAGLTS----------
G-A R LT ----------
712 fiGGNCTVScMldglaGLFandladWmepapfqaagdgG-ArHMRELLTQmGhLnqaVad
yv l pmsyg ntqvve tssmtysiqsgp q f l ygh kp
s v vf
140 150 160 170 180 190
210 220 230 240 250
GI||SP -RDTPSPVDPDTVEVLMTFEPDP--------ADLALSSIPGHETFDPRRHRFSEEELKPQ
- dtPs D t dp--------+ La s IP + -- S EE K q
712 eLadPaaAILDIdRgVlarqrdgeLPqdnFGVPLaGnLIPWIDK--dLdnGqSREEWKaq
l dt ss e k ttltqsps veh g s q gd m ge
200 210 220 230 240
260 270 280 290 300 310
GI||SP PIMKKARKIQVPEEQKDEKYWSRRYKNNEAAKRSRDARRLKENQISVRAAFLEKENALLR
K ===== + S +s+
712 AETNKILnrgaai=====PiDGLCVRiGAlRCHSQAlTIKLKrDVpideiEdLiAAgnqW
gtssvf v v m f k slptv e l htp
250 260 270 280 290 300
614 flavonol udp-glucose 3-o-glucosyltransferase bronz (475 aa)
initn: opt: 482 z-score: 79.2 E(): 9.7
Smith-Waterman score: 518; 10.8% identity in 176 aa overlap
21.0% noncontradicting positions, 10.2% class identity
40 50 60 70 80 90
GI||SP XXXXXXXXXXXXXXXGLRSLLQGTSKPKEPASCLLKEKERKXXXXXXXXXXXXXXXXXXX
s ASC L R
614 VsCVVGDAFVWPaADAAaaAGAPWVaVWTAASCALLAHiRTDaLRrDVGDQAAnRaDelL
t t ss p l s e s v gp
130 140 150 160 170 180
100 110 120 130 140 150
GI||SP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERT---LPFGDVEYVDLDAFXXXXXXXXX
R ---LP -V L+ F
614 iaHaGLagYRVRDLPDGVVSGDFNYVInLLVHRqaQrLPraAaA-VALNTFPGLDPPDli
vs p gs s mg c ks t vt
190 200 210 220 230 240
160 170 180 190 200 210
GI||SP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTASGHRAGLTSRDTP
= = A g--+ S T
614 AALAaeLPNClPlGPYHLLl=AEddADTa=APADPHGCLAWLdRrPARg--VAYVSFGTn
ei v f p pt n g q s v
250 260 270 280 290 300
220 230 240 250 260 270
GI||SP SPVDPDTVEVLMTFEPDPADLALSSIPGHETFDPRRHRFSEEELKPQPIMKKARKIQVPE
+ PD L + d a L S+ r ++
614 AcaRPDELrELAAGLEaSaAPFLWSLREdswaaaPrGFLdRAaGTGSGLVVPWAPQVaVL
tp q d g gvvphl p e p g
tl
310 320 330 340 350 360
Library scan: 0:02:01 total CPU time: 0:02:22
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