Search Result

Alignment Result

Alignment performed with LAP2 program at Michigan Tech. Univ.

Max Match   Min Mismatch   Gap-Open Penalty   Gap-Extension Penalty
   11          -4              10                  2
Upper Sequence: 
        Length: 434
Lower Sequence: 
        Length: 434

*********************************************************
      Number 1 Local Alignment
      Similarity Score : 11
      DNA Strand : plus 
      Match Percentage : 0%
      Number of Matches : 0
      Number of Mismatches : 10
      Total Length of Gaps : 0
      Begins at (24, 310) and Ends at (53, 319)

0     .    :    .    :    .    :
     24 TANGVVSRAAVPSGASTGVYEALELRDGGS
        ..      ..      .    .    ....
    310 TyrLysThrSerAspPheGlnIleValGly

Alternative Display

0     .    :    .    :    .    :
     24 TANGVVSRAAVPSGASTGVYEALELRDGGS
        ..      ..      .    .    ....
    310  Y  K  T  S  D  F  Q  I  V  G

*********************************************************
      Number 2 Local Alignment
      Similarity Score : 11
      DNA Strand : plus 
      Match Percentage : 0%
      Number of Matches : 0
      Number of Mismatches : 18
      Total Length of Gaps : 0
      Begins at (110, 84) and Ends at (163, 101)

0     .    :    .    :    .    :    .    :    .    :
    110 GANAILAVSLAVCKAGASVKKIPLYKHIANLAGNPKLVLPVPAFNVINGGSHAG
        ..    .   .   ...         . .  ..  .     ..    .    ..
     84 AspGlnSerLysValAspGluPheLeuLysLysLeuAspGlySerAlaAsnLys

Alternative Display

0     .    :    .    :    .    :    .    :    .    :
    110 GANAILAVSLAVCKAGASVKKIPLYKHIANLAGNPKLVLPVPAFNVINGGSHAG
        ..    .   .   ...         . .  ..  .     ..    .    ..
     84  D  Q  S  K  V  D  E  F  L  K  K  L  D  G  S  A  N  K

*********************************************************
      Number 3 Local Alignment
      Similarity Score : 10
      DNA Strand : plus 
      Match Percentage : 0%
      Number of Matches : 0
      Number of Mismatches : 12
      Total Length of Gaps : 0
      Begins at (125, 25) and Ends at (160, 36)

0     .    :    .    :    .    :    .
    125 GASVKKIPLYKHIANLAGNPKLVLPVPAFNVINGGS
        ..   .  .  . .   .  .     .  .  ....
     25 GluThrGlyLeuHisArgAlaIleValProSerGly

Alternative Display

0     .    :    .    :    .    :    .
    125 GASVKKIPLYKHIANLAGNPKLVLPVPAFNVINGGS
        ..   .  .  . .   .  .     .  .  ....
     25  E  T  G  L  H  R  A  I  V  P  S  G

*********************************************************
      Number 4 Local Alignment
      Similarity Score : 10
      DNA Strand : plus 
      Match Percentage : 0%
      Number of Matches : 0
      Number of Mismatches : 13
      Total Length of Gaps : 0
      Begins at (140, 149) and Ends at (178, 161)

0     .    :    .    :    .    :    .
    140 LAGNPKLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGA
         ..     .  ..    ....  .     .  .  . ..
    149 GlnAsnValLeuAsnGlyGlySerHisAlaGlyGlyArg

Alternative Display

0     .    :    .    :    .    :    .
    140 LAGNPKLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGA
         ..     .  ..    ....  .     .  .  . ..
    149  Q  N  V  L  N  G  G  S  H  A  G  G  R

*********************************************************
      Number 5 Local Alignment
      Similarity Score : 9
      DNA Strand : plus 
      Match Percentage : 0%
      Number of Matches : 0
      Number of Mismatches : 33
      Total Length of Gaps : 0
      Begins at (62, 65) and Ends at (160, 97)

0     .    :    .    :    .    :    .    :    .    :    .    :
     62 KAVDNVNKIIGPALIGKDATEQTAIDIDFMFQQLDGTVNEWGWCKQKLGANAILAVSLAV
         .      .   .    ...   .  .  .  .        .     ...   ..   . 
     65 GluAsnValAsnLysThrIleAlaProAlaValIleGluGluAsnLeuAspValLysAsp

60     .    :    .    :    .    :    .
    122 CKAGASVKKIPLYKHIANLAGNPKLVLPVPAFNVINGGS
        . .  .     .    .      .        .   ...
     85 GlnSerLysValAspGluPheLeuLysLysLeuAspGly

Alternative Display

0     .    :    .    :    .    :    .    :    .    :    .    :
     62 KAVDNVNKIIGPALIGKDATEQTAIDIDFMFQQLDGTVNEWGWCKQKLGANAILAVSLAV
         .      .   .    ...   .  .  .  .        .     ...   ..   . 
     65  E  N  V  N  K  T  I  A  P  A  V  I  E  E  N  L  D  V  K  D

60     .    :    .    :    .    :    .
    122 CKAGASVKKIPLYKHIANLAGNPKLVLPVPAFNVINGGS
        . .  .     .    .      .        .   ...
     85  Q  S  K  V  D  E  F  L  K  K  L  D  G