BLASTP results
Help
BLASTP 2.0a8MP-WashU [25-Feb-1997] [Build 20:09:46 Feb 25 1997]
Reference: Gish, Warren (1994-1997). unpublished.
Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W. Myers, and David J.
Lipman (1990). Basic local alignment search tool. J. Mol. Biol. 215:403-10.
Query= DNAA
(464 letters)
Database: Subtilist
4107 sequences; 1,217,366 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
dnaA: initiation of chromosome replication. 824 4.0e-84 1
yplP: unknown; similar to transcriptional regulator (sig... 107 6.6e-05 1
xkdC: PBSX prophage. 99 0.00034 1
dnaI: primosome component (helicase loader). 89 0.0059 1
yqaM: unknown; similar to phage-related protein. 85 0.016 1
ykrV: unknown; similar to aspartate aminotransferase. 77 0.16 1
yezA: unknown. 52 0.26 1
yvrG: unknown; similar to two-component sensor histidine... 74 0.48 2
aroI: shikimate kinase. 67 0.50 1
bioD: dethiobiotin synthetase. 66 0.73 1
adeC: adenine deaminase. 70 0.81 1
rocR: transcriptional activator of arginine utilization ... 67 0.93 1
yclA: unknown; similar to transcriptional regulator (Lys... 64 0.96 1
yorB: unknown. 55 0.96 1
expZ: ATP-binding transport protein. 67 0.96 1
yqcD: unknown; similar to phage-related protein. 56 0.98 1
comFA: late competence protein required for DNA uptake. 68 0.993 2
hmp: flavohemoglobin. 62 0.9996 1
hisS: histidyl-tRNA synthetase. 62 0.9998 1
ycdA: unknown. 61 0.9998 1
rapC: response regulator aspartate phosphatase. 61 0.99993 1
>dnaA: initiation of chromosome replication.
Length = 446
Score = 824 (290.1 bits), Expect = 4.0e-84, P = 4.0e-84
Identities = 174/451 (38%), Positives = 267/451 (59%)
Query: 10 WNETLSQIRSESTEAEFNMWFAHLFFIASFENAIEIAVPSDFFRIQFSQKYQEKLERKFL 69
WN+ L+QI + ++ F W + + + I P++F R +Y +
Sbjct: 8 WNQALAQIEKKLSKPSFETWMKSTKAHSLQGDTLTITAPNEFARDWLESRYLHLIADTIY 67
Query: 70 ELSGHPIKLLFAVKKGTPHGNTAPPKHVHTYLEKNSPAEVPSKKSFHPDLNRDYTFENFV 129
EL+G + + F + + + P V +++++ ++ P LN YTF+ FV
Sbjct: 68 ELTGEELSIKFVIPQNQDVEDFMPKPQVKKAVKEDT-SDFPQNM-----LNPKYTFDTFV 121
Query: 130 SGEETKFSHSAAISVSKNPGTSYNPLLIYGGVGLGKTHLMQAIGHEIYK-TTDLNVIYVT 188
G +F+H+A+++V++ P +YNPL IYGGVGLGKTHLM AIGH + V+Y++
Sbjct: 122 IGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIDHNPSAKVVYLS 181
Query: 189 AENFGNEFISTLLNKKTQDFKKKYRYTADVLLIDDIHFFENKDGLQEELFYTFNELFEKK 248
+E F NEFI+++ + K DF+ +YR DVLLIDDI F K+ QEE F+TFN L E+
Sbjct: 182 SEKFTNEFINSIRDNKAVDFRNRYR-NVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEES 240
Query: 249 KQIIFTCDRPVQELKNLSSRLRSRCSRGLSTDLNMPCFETRCAILIKKIQNYNSTYPHKA 308
KQI+ + DRP +E+ L RLRSR GL TD+ P ETR AIL KK + +
Sbjct: 241 KQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA-------EG 293
Query: 309 IHISDDVVRLVSENISSNIRDLEGALTKIIAFIE-VSGSITIDIVPSLLKEFFLSARPKH 367
+ I ++V+ ++ I SNIR+LEGAL +++A+ ++ I D+ LK+ S++PK
Sbjct: 294 LDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKDIIPSSKPKV 353
Query: 368 ITVETILHVVADHFNISYSDLKGKKRNKSVVYPRQIAMFLSKELTELSTTELGIEFGGRD 427
IT++ I VV FNI D K KKR KSV +PRQIAM+LS+E+T+ S ++G EFGGRD
Sbjct: 354 ITIKEIQRVVGQQFNIKLEDFKAKKRTKSVAFPRQIAMYLSREMTDSSLPKIGEEFGGRD 413
Query: 428 HSTVIYGCQKIEGEILTNPSLQANLDLLKSKVQ 460
H+TVI+ +KI + + LQ ++ +K +++
Sbjct: 414 HTTVIHAHEKISKLLADDEQLQQHVKEIKEQLK 446
>yplP: unknown; similar to transcriptional regulator (sigma-L-dependent).
Length = 331
Score = 107 (37.7 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 64/237 (27%), Positives = 105/237 (44%)
Query: 117 PDLNRDYTFENFVSGEETKFSHSAAISVSKNPGTSYNPLLIYGGVGLGKTHLMQAIGHEI 176
P LN TF++ + GE F + I+ K S P+LI G +G GK H AI E
Sbjct: 5 PKLN---TFQHLI-GEHQTFLEAKRIA--KQFSLSELPVLITGKIGTGKNHFAHAIHLES 58
Query: 177 YKTTDLNVIYVTAENFGNE-FISTLL--NKKTQDFKKKYRYTADVLLIDDIHFFENKDGL 233
++ + I V E I L N T F+K R T L +DD+ + +
Sbjct: 59 SRSNE-PFISVNCSTHSEETLIHELFGPNGNTGVFQKAVRGT---LFLDDV--WRMPASV 112
Query: 234 QEELFYTFNELFEKKKQIIFTCDRPVQEL--KNLSSRLRSRCSRGLSTDLNMPCFETRCA 291
Q +L + EK + I + DR V+ ++L RL + T L +P R +
Sbjct: 113 QAQLLKALDSDTEKPRMICASADRSVEHTFRQDLFYRLN------ILT-LTLPELSERKS 165
Query: 292 ILIKKIQNYNSTYPHKAIHISDDVVRLVSEN-ISSNIRDLEGALTKIIAFIEVSGSIT-I 349
+ Q++ S + + I V ++ ++ N+R+L+ A +A + G+I
Sbjct: 166 DIPLLTQHFLSNSGQQLL-IDPSVFPVLEKHAFEGNVRELKNA-ADYMAAVSSGGTIQPY 223
Query: 350 DIVP 353
D+ P
Sbjct: 224 DLPP 227
>xkdC: PBSX prophage.
Length = 266
Score = 99 (34.8 bits), Expect = 0.00034, P = 0.00034
Identities = 37/122 (30%), Positives = 59/122 (48%)
Query: 153 NPLLIYGGVGLGKTHLMQAIGHEIYKTTDLNVIYVT-AENFG---NEFISTLLNKKTQDF 208
N + + G G GKTHL+ A +E+ +T + VIY E F N+F LL K
Sbjct: 118 NSIALLGQPGSGKTHLLTAAANELMRTCYVPVIYFPFVEGFTDLKNDF--ALLEAKLNRM 175
Query: 209 KKKYRYTADVLLIDDIHFFEN-----KDGLQEELFYTFNELFEKKKQIIFTCDRPVQELK 263
K+ ADVL IDD+ N D E+++ N + K I+ + + ++ L
Sbjct: 176 KQ-----ADVLFIDDLFKPVNGKPRATDWQLEQMYSVLNYRYLNHKPILLSSELTIEGLV 230
Query: 264 NLSSRLRSR 272
+ L ++
Sbjct: 231 RVDEALGTK 239
>dnaI: primosome component (helicase loader).
Length = 311
Score = 89 (31.3 bits), Expect = 0.0060, P = 0.0059
Identities = 34/129 (26%), Positives = 56/129 (43%)
Query: 136 FSHSAAISVSKNPGTSYNPLLIYGGVGLGKTHLMQAIGHEIY-KTTDLNVIYVTAENFGN 194
F H S N L +YG G+GKT ++ AI +E+ K ++YV F
Sbjct: 145 FQHVTDFLKSYNETGKGKGLYLYGKFGVGKTFMLAAIANELAEKEYSSMIVYVP--EFVR 202
Query: 195 EFISTLLNKKTQDFKKKYRYTADVLLIDDIHFFENKDGLQEELFYT-FNELFEKKKQIIF 253
E + L +T + K T VL++DDI +++E+ T ++ F
Sbjct: 203 E-LKNSLQDQTLEEKLNMVKTTPVLMLDDIGAESMTSWVRDEVIGTVLQHRMSQQLPTFF 261
Query: 254 TCDRPVQELKN 264
+ + ELK+
Sbjct: 262 SSNFSPDELKH 272
>yqaM: unknown; similar to phage-related protein.
Length = 313
Score = 85 (29.9 bits), Expect = 0.017, P = 0.016
Identities = 38/157 (24%), Positives = 71/157 (45%)
Query: 125 FENFVSG---EETKFSHSAAISVSKN----PGTSYNPLLIYGGVGLGKTHLMQAIGHEIY 177
F NF++ + K ++ A+ K+ G N + + G G GKTHL+ AI + +
Sbjct: 130 FGNFITDGKPDMIKDAYECAVEYYKDFQKIKGERQNSIALLGQPGSGKTHLLTAIMNNLI 189
Query: 178 KTTDLNVIYVT-AENFGNEFISTLLNKKTQ-DFKKKYRYTADVLLIDDIHFFEN-----K 230
K ++ +Y E G + + N + + D +K +VL IDD+ N
Sbjct: 190 KKKSVHCMYFPYVEGMG-DLKANFDNLEAKLDAMRK----VEVLFIDDLFKPINGQPRAT 244
Query: 231 DGLQEELFYTFNELFEKKKQIIFTCDRPVQELKNLSSRLRSR 272
D E++ N + K ++ + + + E+ ++ L SR
Sbjct: 245 DWQVEQIQSVLNYRYLNHKPLLISSELTIDEILDIDEALGSR 286
>ykrV: unknown; similar to aspartate aminotransferase.
Length = 398
Score = 77 (27.1 bits), Expect = 0.18, P = 0.16
Identities = 27/82 (32%), Positives = 38/82 (46%)
Query: 365 PKHITVETILHVVADHFNISYSDLKGKKRNKSVV---YPRQIAMFLSKELTELSTTELGI 421
P+HI VE + VAD N YS +G R KS Y R+ + L E TE+ +
Sbjct: 47 PEHI-VEEMKRAVADPENHKYSSFRGSYRLKSAAAAFYKREYGIDLDPE------TEVAV 99
Query: 422 EFGGRDHSTVIYGCQKIEGEILTNP 446
FGG+ + C G+ + P
Sbjct: 100 LFGGKAGLVELPQCLLNPGDTILVP 124
>yezA: unknown.
Length = 68
Score = 52 (18.3 bits), Expect = 0.30, P = 0.26
Identities = 21/53 (39%), Positives = 25/53 (47%)
Query: 77 KLLFAVKKGTPHGNTAPPKHVHTYL---EKNSPAEVPSKKSFHPDLNRDYTFENFV 129
+L+F VK+ T + V YL EKN P PS F N DYT E V
Sbjct: 8 ELIFLVKELM--NPTLDDEKVSEYLDLLEKNVPYPAPSDLIFWS--NEDYTAEQVV 59
>yvrG: unknown; similar to two-component sensor histidine kinase [YvrH].
Length = 573
Score = 74 (26.0 bits), Expect = 0.66, Sum P(2) = 0.48
Identities = 28/103 (27%), Positives = 47/103 (45%)
Query: 228 ENKDGLQEELFYTFNELFEKKKQIIFTCDRPVQELKNLSSRLRSRCSRGLSTDLNMPCFE 287
+NK G ++ + F E+FE Q+ T R + + + + R GLS DL P
Sbjct: 309 KNKKGKIKQPYRFFGEIFESMDQLTETLRRDKRNREKIQAT-REEWIAGLSHDLKTPLSS 367
Query: 288 TRCAILIKKIQNYNSTYPHKAIHISDDVVRLVSENISSNIRDL 330
++ + + Y+ + P + + VVR SE +S I DL
Sbjct: 368 IYGYSMMLESKQYDWS-PEEGEEMGQ-VVREKSEYMSKLIEDL 408
Score = 42 (14.8 bits), Expect = 0.66, Sum P(2) = 0.48
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 183 NVIYVTAENFGNEFISTLL 201
N +YVT + F F+ +L
Sbjct: 234 NPVYVTDQEFNKSFLKVVL 252
>aroI: shikimate kinase.
Length = 186
Score = 67 (23.6 bits), Expect = 0.69, P = 0.50
Identities = 17/64 (26%), Positives = 36/64 (56%)
Query: 155 LLIYGGVGLGKTHLMQAIGHEIYKTTDLNVIYVTAENFGNEFISTLLNKKTQDFKKKYR- 213
+++ G +G+GKT + Q + ++Y+ +++ ++F N I + KK +DF +K
Sbjct: 14 IVLIGFMGVGKTTIGQLVAKKLYRDF-IDIDQQIEKDF-NMSIPEIFEKKGEDFSRKTEK 71
Query: 214 -YTADV 218
Y D+
Sbjct: 72 EYILDI 77
>bioD: dethiobiotin synthetase.
Length = 231
Score = 66 (23.2 bits), Expect = 1.3, P = 0.73
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 361 LSARPK--HITVETILHVVADHFNIS 384
L PK ++T ET+LH+V DH N+S
Sbjct: 198 LGVTPKLANVTKETVLHMVKDHINLS 223
>adeC: adenine deaminase.
Length = 577
Score = 70 (24.6 bits), Expect = 1.7, P = 0.81
Identities = 31/100 (31%), Positives = 49/100 (49%)
Query: 281 LNMPCFETRCAILIK--KIQN-YNSTYPHKAIHISDDVVRLVSENISSNIRDLEGALTKI 337
LN + I+IK KI + YN + ++ I I+D V+ + E NI D EG + +
Sbjct: 10 LNASAKRQKADIVIKNGKIMDVYNQEWIYEDIAITDGVIVGLGEYEGENIIDAEGQMI-V 68
Query: 338 IAFIEVSGSITIDIVPSLLKEFFLSARPKHIT-VETILHVVAD 379
FI+ I +V + EF + P +T V T H +A+
Sbjct: 69 PGFIDGHVHIESSMVTPI--EFAKAVLPHGVTTVVTDPHEIAN 109
>rocR: transcriptional activator of arginine utilization operons.
Length = 461
Score = 67 (23.6 bits), Expect = 2.7, P = 0.93
Identities = 36/127 (28%), Positives = 59/127 (46%)
Query: 297 IQNYNSTYPHKAIHISDDVVRL-VSENISSNIRDLEGALTKIIAFIEVSGSITIDIVPSL 355
IQ N + HISDDV + +S + NIR+LE + + F+ +IT +P
Sbjct: 328 IQKNNHLFQMNVEHISDDVKQFFLSYDWPGNIRELEHMIEGAMNFMTDEQTITASHLPY- 386
Query: 356 LKEFFLSARPKHITV-ETILHVVADHFNISYSDLKGKKRN--KSVVYP--RQIAMFLSKE 410
++ + +P I ET H A +DLK K + K V+ R+ +SK
Sbjct: 387 --QYRMKIKPADIPEPETPRHQPA-------ADLKEKMESFEKYVIENVLRKHGHNISKA 437
Query: 411 LTELSTTELGIEF 423
EL + +++
Sbjct: 438 AQELGISRQSLQY 450
>yclA: unknown; similar to transcriptional regulator (LysR family).
Length = 290
Score = 64 (22.5 bits), Expect = 3.1, P = 0.96
Identities = 27/130 (20%), Positives = 56/130 (43%)
Query: 227 FENKDGLQEELFYTFNELFEKKKQIIFTCDRPVQELKNLSSRLRSRCSRGLSTDLNMPCF 286
F+ Q L Y ++ K+I+ + V E++ L + + G ST + C
Sbjct: 48 FDRNKKKQMTLTYEGAVFLKRAKEILHRFEDAVIEVQELKEEVAGTLAVG-ST---IYC- 102
Query: 287 ETRCAILIKKIQNYNSTYPHKAIHISDDVVRLVSENISSNIRDLEGALTKIIAFIEVSGS 346
A++++K+ YPH +I ++ + E + S R ++ A+T + +
Sbjct: 103 ---AALMLEKVTQIKERYPHLTFNIWENEPATLLELLES--RQIDAAVTTTLIKSDTVQF 157
Query: 347 ITIDIVPSLL 356
+D +P +L
Sbjct: 158 KQLDDIPCVL 167
>yorB: unknown.
Length = 98
Score = 55 (19.4 bits), Expect = 3.3, P = 0.96
Identities = 20/80 (25%), Positives = 38/80 (47%)
Query: 172 IGHEIYKTTD-LNVIYVTAENFGNEFISTLLNKKT--QDFKKKYRYTADVLLIDDIHFFE 228
I +E++ D L Y+ +N N + + K+ Q +K Y++DV + D E
Sbjct: 11 IRYEVFDDYDPLTEEYL-GKNLANAYFIAQIKKENVVQVGNRKINYSSDVKIGFDAFGEE 69
Query: 229 NKDGLQEELFYTFNELFEKKK 249
K+ ++E L ++ + E K
Sbjct: 70 TKEKIKEYLLAAYSLIAEGAK 90
>expZ: ATP-binding transport protein.
Length = 547
Score = 67 (23.6 bits), Expect = 3.3, P = 0.96
Identities = 29/102 (28%), Positives = 53/102 (51%)
Query: 234 QEELFYTFNELFEKKKQIIFTCDRPVQELKNLSS--RLRSRCSRGLSTD-----LNMPCF 286
QE Y+F + +K+++ P+++ LS +L++R ++GLS D L+ P
Sbjct: 73 QETAAYSFADQTPAEKKLLEKWHVPLRDFHQLSGGEKLKARLAKGLSEDADLLLLDEPTN 132
Query: 287 ---ETRCAILIKKIQNYNSTYPHKAIHISDDVVRLVSENISSNIRDLE 331
E LI+++++YN T I +S D R + ++ I LE
Sbjct: 133 HLDEKSLQFLIQQLKHYNGT----VILVSHD--RYFLDEAATKIWSLE 174
>yqcD: unknown; similar to phage-related protein.
Length = 111
Score = 56 (19.7 bits), Expect = 3.9, P = 0.98
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 22 TEAEFNMWFAHLFFIASFENAIEIAVPSDFFRIQFSQKYQEKLERKFLE 70
TEAE W+ L +++E +++ D + SQ EKL RK LE
Sbjct: 44 TEAELKTWWEELQSTSAYEPPVQV----DLLARELSQ---EKLARKQLE 85
>comFA: late competence protein required for DNA uptake.
Length = 463
Score = 68 (23.9 bits), Expect = 5.0, Sum P(2) = 0.99
Identities = 21/95 (22%), Positives = 47/95 (49%)
Query: 177 YKTTDLNVIYVTAENFGNEFISTLLNKKTQDFKKKYRYTADVLLIDDIHFFENKDGLQEE 236
++ D++ +Y +++ G +S L+ T + Y+ DV++ID++ F +
Sbjct: 191 FQGADISALYGGSDDKGR--LSPLMISTTHQLLR-YKDAIDVMIIDEVDAFPYS--ADQT 245
Query: 237 LFYTFNELFEKKKQIIFTCDRPVQELKN--LSSRLRS 271
L + + +K +++ P +ELK L+ +L S
Sbjct: 246 LQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHS 282
Score = 37 (13.0 bits), Expect = 5.0, Sum P(2) = 0.99
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 124 TFENFVSGEETKFSHSAAISVSKNPGTSYNPLLIYGGVGLGKTHLM 169
T++ +S + K ++ ++SK LLI+ G GKT ++
Sbjct: 116 TWDGKLSSGQQKAANVLIEAISKK-----EELLIWAVCGAGKTEML 156
>hmp: flavohemoglobin.
Length = 399
Score = 62 (21.8 bits), Expect = 7.9, P = 1.0
Identities = 37/182 (20%), Positives = 76/182 (41%)
Query: 94 PKHVHTYLEKNSPAEVPSKKSFHPDLNRD-----YTFENFVSGEETKFSHSAAISVSKNP 148
P +T++ + S +++P K + + +D Y + G+ + S A V +
Sbjct: 198 PDSEYTHIRQYSLSDMPGKDYYRISVKKDGVVSSYLHDGLQEGDSIEISAPAGDFVLDH- 256
Query: 149 GTSYNPLLIYGGVGLGKTHLMQAIGHEIYKTTDLNVIYV-TAENFGNEFISTLLNKKTQD 207
+ + +LI GVG+ T ++ + + K + ++++ A+N + + + +
Sbjct: 257 ASQKDLVLISAGVGI--TPMISMLKTSVSKQPERQILFIHAAKNSEYHALRHEVEEAAKH 314
Query: 208 FKKK----YRYTADVLLIDDIHFFENKDGLQEELFYTFNELFEKKKQIIFTCDRP--VQE 261
K YR + D+HF E G ++ F EL + C P +
Sbjct: 315 SAVKTAFVYREPTEEDRAGDLHFHE---GQIDQQF--LKELIANTDADYYICGSPSFITA 369
Query: 262 LKNLSSRLRS 271
+ L S L S
Sbjct: 370 MHKLVSELGS 379
>hisS: histidyl-tRNA synthetase.
Length = 424
Score = 62 (21.8 bits), Expect = 8.5, P = 1.0
Identities = 25/90 (27%), Positives = 38/90 (42%)
Query: 71 LSGHPIKLLFAVKKGTPHGNTAPPKHVHTYLEKNSPAEVPSKKSFHPDLNRDYTFE-NFV 129
L +P+++L KK H + TYL + S A K + DL Y + N V
Sbjct: 199 LHTNPLRILDC-KKDRDHELMKSAPSILTYLNEESAAYFEKVKQYLNDLGISYEIDPNLV 257
Query: 130 SGEETKFSHSAAISVSKNPGTSYNPLLIYGG 160
G + ++H+A +S G L GG
Sbjct: 258 RGLDY-YNHTAFEIMSNAEGFGAITTLAGGG 287
>ycdA: unknown.
Length = 354
Score = 61 (21.5 bits), Expect = 8.7, P = 1.0
Identities = 47/202 (23%), Positives = 87/202 (43%)
Query: 206 QDFKKKYR---YTADVLLIDDIHFFENKDGLQEELFYTFNELFEKK-KQIIFTCDRPVQE 261
+D+ +K + AD + ++ F +K G Q EL YT +KK K + F D ++
Sbjct: 105 EDYSEKLQGSTINADKSVEGNLFFVVDK-GKQYELNYTPESYGDKKPKSVTFKIDGKDKK 163
Query: 262 LKNLSSRLRSRCSRGLSTDLNMPCFETRCAILIKKIQNYNSTYPHKAIHISDDVVRLVSE 321
+ + +L+ ++ LS +++ F A +KI N + S L +
Sbjct: 164 ILATADKLQDS-AKALSAYVDVLLFGKDNADF-EKITGANKNEIVNDFNESAKDGYLSAS 221
Query: 322 NISSNIRDLEGALTKIIAFIE--VSGSITIDI-VPSLLK-EFFLSARPKHITVETILHVV 377
+SS D + AL I+ I+ +S + +I S+ K E + A K + ++ +
Sbjct: 222 GLSSTYADSK-ALDNIVNGIKEGLSKNSSIQAKTTSISKDEAIVEATVKPVDASSLSDRI 280
Query: 378 ADHFNISYSDLKGKKRNKSVVYPRQI 403
D YS ++V Y Q+
Sbjct: 281 EDKVKDYYSKNSSASYEEAVKYALQV 306
>rapC: response regulator aspartate phosphatase.
Length = 382
Score = 61 (21.5 bits), Expect = 9.6, P = 1.0
Identities = 25/76 (32%), Positives = 34/76 (44%)
Query: 305 PHKAIHISDDV-VRLVSENISSNIRDLEGALTKIIAFIEVSGSITIDIVPSLLKEFFLSA 363
P + ++I D + +S NI SN DL+G L + F G D K F+SA
Sbjct: 70 PLEKLNIEDQPSLSELSRNIDSNQADLKGLLDYYVNFFR--GMYEFD------KREFISA 121
Query: 364 RPKHITVETILHVVADH 380
+ E L VADH
Sbjct: 122 ITYYKQAEKKLSFVADH 138
Parameters:
ctxfactor=1.00
E=10
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.136 0.389 same same same
q=9 r=2 0.244 0.0300 0.180
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 464 464 10. 52 3 11 22 0.20 34
35 0.22 37
Statistics:
Query Expected Observed HSPs HSPs
Frame MatID High Score High Score Reportable Reported
+0 0 56 (25.8 bits) 254 (116.9 bits) 23 23
Query Neighborhd Word Excluded Failed Successful Overlaps
Frame MatID Words Hits Hits Extensions Extensions Excluded
+0 0 10077 1113834 217595 894298 1940 2
Database: /local/gensoft/lib/blast/db/subti_protein
Title: Subtilist
Release date: unknown
Posted date: 9:43 AM MET DST Sep 28, 1999
Format: BLAST
# of letters in database: 1,217,366
# of sequences in database: 4107
# of database sequences satisfying E: 21
No. of states in DFA: 565 (111 KB)
Total size of DFA: 318 KB (320 KB)
Time to generate neighborhood: 0.05u 0.01s 0.06t Elapsed: 00:00:00
No. of processors used: 2
Search cpu time: 4.70u 0.06s 4.76t Elapsed: 00:00:10
Total cpu time: 4.93u 0.18s 5.11t Elapsed: 00:00:10
Start: Mon Feb 14 19:50:58 2000 End: Mon Feb 14 19:51:08 2000
