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Links to Entrez and to the Human Genome Sequencing Center, Baylor College of Medicine:
= Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
= Retrieve Entrez links to Related sequences (neighbors).
= Retrieve SRS links (if present).
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
(490 letters)
If you have any problems or questions with the results of this search
please refer to the BLAST FAQs
Score E
Sequences producing significant alignments: (bits) Value
gi|216434|dbj|D10483|ECO110K E.coli K12 genome, 0-2.4min. r... 967 0.0
gi|145303|gb|M15263|ECOARAABD E.coli araBAD operon encoding... 967 0.0
gi|1786240|gb|AE000116.1|AE000116 Escherichia coli K-12 MG1... 958 0.0
gi|153866|gb|M11047|STYARABAD S.typhimurium araBAD operon: ... 895 0.0
gi|5616303|gb|AF160811.1|AF160811 Bacillus stearothermophil... 238 2e-61
gi|2635200|emb|Z99118|BSUB0015 Bacillus subtilis complete g... 233 8e-60
gi|1769994|emb|Z75208.1|BSZ75208 B.subtilis genomic sequenc... 233 8e-60
gi|1924929|emb|X89408|BSARAABD B.subtilis DNA for araA, ara... 229 2e-58
gi|2905642|gb|AF045244|AF045244 Klebsiella pneumoniae ribit... 80 2e-13
gi|747879|emb|Z48758|SC9727 S.cerevisiae chromosome IV cosm... 66 2e-09
gi|2895853|gb|AF045552|AF045552 Lactobacillus brevis xyl op... 55 7e-06
gi|2293413|gb|AF007800|AF007800 Pseudomonas fluorescens man... 52 4e-05
gi|2634090|emb|Z99113|BSUB0010 Bacillus subtilis complete g... 51 8e-05
gi|1750106|gb|U66480|BSU66480 Bacillus subtilis SpoVK (spoV... 51 8e-05
gi|2905644|gb|AF045245|AF045245 Klebsiella pneumoniae D-ara... 50 1e-04
gi|2581794|gb|AF001974|AF001974 Thermoanaerobacter ethanoli... 50 2e-04
gi|2689305|gb|AE000982|AE000982 Archaeoglobus fulgidus sect... 44 0.014
gi|149604|gb|M57384|LBAXYLAA L.pentosus xylose repressor (x... 39 0.27
gi|2618993|gb|AF027868|AF027868 Bacillus subtilis chromosom... 36 2.3
gi|2634230|emb|Z99114|BSUB0011 Bacillus subtilis complete g... 36 2.3
gi|1217635|emb|Z69923|HSL219F9A Human DNA sequence from cos... 36 2.3
gi|957311|gb|S77512|S77512 LAMB2=laminin beta 2 chain [huma... 36 3.0
gi|3261664|emb|Z82098|MTCY3C7 Mycobacterium tuberculosis H3... 36 4.0
gi|1702970|gb|AD000003|MSGY244 Mycobacterium tuberculosis s... 36 4.0
gi|4512311|dbj|AB019441.1|AB019441 Homo sapiens DNA for imm... 35 6.8
gi|1702966|gb|AD000002|MSGY154 Mycobacterium tuberculosis s... 35 6.8
gi|1770449|emb|X97051.1|HSIMMDL DNA sequence of the human i... 35 6.8
gi|2329908|gb|AC002126|AC002126 Homo sapiens DNA from chrom... 35 6.8
gi|5123528|emb|AL079332.1|SCI5 Streptomyces coelicolor cosm... 35 6.8
gi|3261838|emb|Z98209|MTCY154 Mycobacterium tuberculosis H3... 35 6.8
gi|2406564|gb|U68140|HSU68140 Homo sapiens nuclear VCP-like... 34 8.9
gi|4505482|ref|NM_002533.1|NVL| Homo sapiens nuclear VCP-li... 34 8.9
gi|216434|dbj|D10483|ECO110K E.coli K12 genome, 0-2.4min. region
Length = 111401
Score = 967 bits (2472), Expect = 0.0
Identities = 468/490 (95%), Positives = 468/490 (95%)
Frame = -3
Query: 1 MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIES 60
MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIES
Sbjct: 69708 MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIES 69529
Query: 61 MEAALKTVLAELSVEQRAAXXXXXXXXXXXXXXXXXXXXXXLALRPEFAENPNAMFVLWK 120
MEAALKTVLAELSVEQRAA LALRPEFAENPNAMFVLWK
Sbjct: 69528 MEAALKTVLAELSVEQRAAVVGIGVDSTGSTPAPIDADGNVLALRPEFAENPNAMFVLWK 69349
Query: 121 DHTAVERSEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIEL 180
DHTAVERSEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIEL
Sbjct: 69348 DHTAVERSEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIEL 69169
Query: 181 CDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFT 240
CDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFT
Sbjct: 69168 CDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFT 68989
Query: 241 DTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDI 300
DTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDI
Sbjct: 68988 DTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDI 68809
Query: 301 LIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWPLEQLAAQH 360
LIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWPLEQLAAQH
Sbjct: 68808 LIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWPLEQLAAQH 68629
Query: 361 PELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRSPNANQRLKGVITDLNLA 420
PELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRSPNANQRLKGVITDLNLA
Sbjct: 68628 PELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRSPNANQRLKGVITDLNLA 68449
Query: 421 TDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPL 480
TDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPL
Sbjct: 68448 TDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPL 68269
Query: 481 QIVASDQCCA 490
QIVASDQCCA
Sbjct: 68268 QIVASDQCCA 68239
gi|145303|gb|M15263|ECOARAABD E.coli araBAD operon encoding L-ribulokinase, L-arabinose
isomerase, and L-ribulose 5-phosphate 4-epimerase.
Length = 4478
Score = 967 bits (2472), Expect = 0.0
Identities = 468/490 (95%), Positives = 468/490 (95%)
Frame = +3
Query: 1 MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIES 60
MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIES
Sbjct: 120 MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIES 299
Query: 61 MEAALKTVLAELSVEQRAAXXXXXXXXXXXXXXXXXXXXXXLALRPEFAENPNAMFVLWK 120
MEAALKTVLAELSVEQRAA LALRPEFAENPNAMFVLWK
Sbjct: 300 MEAALKTVLAELSVEQRAAVVGIGVDSTGSTPAPIDADGNVLALRPEFAENPNAMFVLWK 479
Query: 121 DHTAVERSEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIEL 180
DHTAVERSEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIEL
Sbjct: 480 DHTAVERSEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIEL 659
Query: 181 CDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFT 240
CDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFT
Sbjct: 660 CDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFT 839
Query: 241 DTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDI 300
DTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDI
Sbjct: 840 DTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDI 1019
Query: 301 LIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWPLEQLAAQH 360
LIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWPLEQLAAQH
Sbjct: 1020LIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWPLEQLAAQH 1199
Query: 361 PELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRSPNANQRLKGVITDLNLA 420
PELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRSPNANQRLKGVITDLNLA
Sbjct: 1200PELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRSPNANQRLKGVITDLNLA 1379
Query: 421 TDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPL 480
TDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPL
Sbjct: 1380TDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPL 1559
Query: 481 QIVASDQCCA 490
QIVASDQCCA
Sbjct: 1560QIVASDQCCA 1589
gi|1786240|gb|AE000116.1|AE000116 Escherichia coli K-12 MG1655 section 6 of 400 of the complete genome
Length = 13039
Score = 958 bits (2450), Expect = 0.0
Identities = 462/490 (94%), Positives = 465/490 (94%)
Frame = -3
Query: 1 MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIES 60
MAIAIGLDFGSDSVRALAVDCA+GEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIES
Sbjct: 12842 MAIAIGLDFGSDSVRALAVDCATGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIES 12663
Query: 61 MEAALKTVLAELSVEQRAAXXXXXXXXXXXXXXXXXXXXXXLALRPEFAENPNAMFVLWK 120
MEAALKTVLAELSVEQRAA LALRPEFAENPNAMFVLWK
Sbjct: 12662 MEAALKTVLAELSVEQRAAVVGIGVDSTGSTPAPIDADGNVLALRPEFAENPNAMFVLWK 12483
Query: 121 DHTAVERSEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIEL 180
DHTAVE +EEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIEL
Sbjct: 12482 DHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIEL 12303
Query: 181 CDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFT 240
CDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFT
Sbjct: 12302 CDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFT 12123
Query: 241 DTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDI 300
DTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDI
Sbjct: 12122 DTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDI 11943
Query: 301 LIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWPLEQLAAQH 360
LIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVL WPLEQLAAQH
Sbjct: 11942 LIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLGWPLEQLAAQH 11763
Query: 361 PELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRSPNANQRLKGVITDLNLA 420
PELK QINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRR+PNANQRLKGVITDLNLA
Sbjct: 11762 PELKTQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRTPNANQRLKGVITDLNLA 11583
Query: 421 TDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPL 480
TDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPL
Sbjct: 11582 TDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPL 11403
Query: 481 QIVASDQCCA 490
QIVASDQCCA
Sbjct: 11402 QIVASDQCCA 11373
gi|153866|gb|M11047|STYARABAD S.typhimurium araBAD operon: araB, araA, and araD genes coding for
ribulokinase, L-arabinose isomerase, and
L-ribulose-5-phosphate 4-epimerase.
Length = 4790
Score = 895 bits (2287), Expect = 0.0
Identities = 426/490 (86%), Positives = 447/490 (90%)
Frame = +3
Query: 1 MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIES 60
MAIAIGLDFGSDSVRALAVDCA+G+EIATSVEWYPRWQ+G++CD PNNQFRHHPRDY+ES
Sbjct: 120 MAIAIGLDFGSDSVRALAVDCATGDEIATSVEWYPRWQEGRYCDGPNNQFRHHPRDYMES 299
Query: 61 MEAALKTVLAELSVEQRAAXXXXXXXXXXXXXXXXXXXXXXLALRPEFAENPNAMFVLWK 120
MEAALK VLA+LS QRA LALRPEFAENPNAMFVLWK
Sbjct: 300 MEAALKAVLAQLSAAQRANVVGIGVDSTGSTPAPIDADGNVLALRPEFAENPNAMFVLWK 479
Query: 121 DHTAVERSEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIEL 180
DHTAVE ++EITRLCH PG VDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQ+A SWIEL
Sbjct: 480 DHTAVEEADEITRLCHKPGKVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQAAVSWIEL 659
Query: 181 CDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFT 240
CDWVPALLSGTTRPQDIRRGRCSAGHK+LWHESWGGLPPASFFDELDP +NRHL PLF+
Sbjct: 660 CDWVPALLSGTTRPQDIRRGRCSAGHKTLWHESWGGLPPASFFDELDPCINRHLRYPLFS 839
Query: 241 DTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDI 300
+T+TAD+PVGTLC EWAQRL LPESVVISGGAFDCHMGAVGAGAQPN LVKVIGTSTCDI
Sbjct: 840 ETFTADLPVGTLCAEWAQRLDLPESVVISGGAFDCHMGAVGAGAQPNTLVKVIGTSTCDI 1019
Query: 301 LIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWPLEQLAAQH 360
LIADKQSVG+RAVKGICGQVDGSVVP FIGLEAGQSAFGDIYAWF RVLSWPLEQLAAQH
Sbjct: 1020LIADKQSVGDRAVKGICGQVDGSVVPNFIGLEAGQSAFGDIYAWFSRVLSWPLEQLAAQH 1199
Query: 361 PELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRSPNANQRLKGVITDLNLA 420
PELK QINASQKQLLPALT+AWAKNPSLDHLPVVLDWFNGRR+PNANQRLKGVITDLNLA
Sbjct: 1200PELKPQINASQKQLLPALTDAWAKNPSLDHLPVVLDWFNGRRTPNANQRLKGVITDLNLA 1379
Query: 421 TDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPL 480
TDAP LFGGL+A+TAFGARAI ECFTDQGIAVNNVMALGGIARKNQVIMQ CCDVLNRPL
Sbjct: 1380TDAPALFGGLVASTAFGARAIQECFTDQGIAVNNVMALGGIARKNQVIMQVCCDVLNRPL 1559
Query: 481 QIVASDQCCA 490
QIVASDQCCA
Sbjct: 1560QIVASDQCCA 1589
gi|5616303|gb|AF160811.1|AF160811 Bacillus stearothermophilus L-arabinose transport, ATP binding
protein (araG), L-arabinose membrane permease (araH),
AraR (araR), L-ribulose 5-phosphate 4-epimerase (araD),
L-ribulokinase (araB), L-arabinose isomerase ...
Length = 10671
Score = 238 bits (602), Expect = 2e-61
Identities = 159/483 (32%), Positives = 237/483 (48%), Gaps = 11/483 (2%)
Frame = +1
Query: 5 IGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFR-----HHPRDYIE 59
IG+D+G++S RA+ VD G EIA V YP + N Q HP DYIE
Sbjct: 5068 IGIDYGTESGRAVLVDL-EGNEIADHVTPYPHGVIDEVLPESNVQLEPDWALQHPADYIE 5244
Query: 60 SMEAALKTVLAELSVEQRAAXXXXXXXXXXXXXXXXXXXXXXLALRPEFAENPNAMFVLW 119
+ A+ TVL + V A L L+PEF P++ LW
Sbjct: 5245 VLATAVPTVLQKSGVNP-ADVIGVGIDFTSCTMLPVDASGEPLCLKPEFRNRPHSWVKLW 5421
Query: 120 KDHTAVERSEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIE 179
K H A + + + + G RY GG SSEW AKI + +D + + ++E
Sbjct: 5422 KHHAAQDEANLLNEIAAKRGEAFLPRY-GGKISSEWMIAKIWQILNEDPEIYEQTDLFLE 5598
Query: 180 LCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLF 239
DWV ++G +I R C+AG+KS+WH+ G P FF LDP L + L
Sbjct: 5599 GTDWVIFKMTG-----NIVRNSCAAGYKSIWHKQ-DGYPSKEFFRALDPRLEHLTETKLR 5760
Query: 240 TDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGA-QPNALVKVIGTSTC 298
G L E A +GL ++ G D H G G +P LV +GTS C
Sbjct: 5761 GPIVPLGTRAGVLTNEMAAMMGLLPGTAVAVGNVDAHAAVPGVGVVEPGKLVMAMGTSIC 5940
Query: 299 DILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWPLEQLAA 358
+L+ + E+ V+G+CG V+ ++PG+ G EAGQSA GDI+AW+ +EQ
Sbjct: 5941 HMLLGTE----EKYVEGMCGVVEDGIIPGYFGYEAGQSAVGDIFAWY-------VEQGVP 6087
Query: 359 QHPELKAQINASQKQLLPALTEAWAKNPSLDHLP-----VVLDWFNGRRSPNANQRLKGV 413
+ + A++K+ + W + + + P + LDW+NG RS + L G+
Sbjct: 6088 AYVK-----EAAEKEGISV--HEWLEKRAAAYRPGETGLLALDWWNGNRSVLVDTDLTGL 6246
Query: 414 ITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACC 473
I L T ++ L+ ATAFG R I++ F + G+ V+ + A GG+ +K++++MQ
Sbjct: 6247 IVGYTLLTKPEEIYRALLEATAFGTRKIIDAFVENGVKVDELYACGGLPQKDKLLMQIYA 6426
Query: 474 DVLNRPLQIVASDQ 487
DV NR ++I AS Q
Sbjct: 6427 DVTNREIKIAASKQ 6468
gi|2635200|emb|Z99118|BSUB0015 Bacillus subtilis complete genome (section 15 of 21): from 2795131 to
3013540
Length = 218410
Score = 233 bits (589), Expect = 8e-60
Identities = 146/490 (29%), Positives = 237/490 (47%), Gaps = 8/490 (1%)
Frame = -3
Query: 1 MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRW-------QKGQFCDAPNNQFRHH 53
MA IG+DFG+ S RA+ V +GEE+A +V+ Y + GQ P + H
Sbjct: 151343 MAYTIGVDFGTLSGRAVLVHVQTGEELAAAVKEYRHAVIDTVLPKTGQ--KLPRDWALQH 151170
Query: 54 PRDYIESMEAALKTVLAELSVEQRAAXXXXXXXXXXXXXXXXXXXXXXLALRPEFAENPN 113
P DY+E +E + ++L + V+ + L + PE+ E P+
Sbjct: 151169 PADYLEVLETTIPSLLEQTGVDPKDIIGIGIDFTACTILPIDSSGQP-LCMLPEYEEEPH 150993
Query: 114 AMFVLWKDHTAVERSEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQS 173
+ LWK H A + ++ + ++ G RY GG SSEW K++ + + + ++
Sbjct: 150992 SYVKLWKHHAAQKHADRLNQIAEEEGEAFLQRY-GGKISSEWMIPKVMQIAEEAPHIYEA 150816
Query: 174 AASWIELCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRH 233
A IE DW+ L G+ ++R C+AG+K++W E G P FF++L+P +
Sbjct: 150815 ADRIIEAADWIVYQLCGS-----LKRSNCTAGYKAMWSEK-AGYPSDDFFEKLNPSMKTI 150654
Query: 234 LPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAG-AQPNALVKV 292
L + G+L + A+ GL ++ D H+ G +P ++ +
Sbjct: 150653 TKDKLSGSIHSVGEKAGSLTEKMAKLTGLLPGTAVAVANVDAHVSVPAVGITEPGKMLMI 150474
Query: 293 IGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWP 352
+GTSTC +L+ ++ + V G+CG VD ++PG+ G EAGQS GD + WF + P
Sbjct: 150473 MGTSTCHVLLGEEVHI----VPGMCGVVDNGILPGYAGYEAGQSCVGDHFDWFVKTCVPP 150306
Query: 353 LEQLAAQHPELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRSPNANQRLKG 412
Q A+ + S+K A E+ + LDW+NG RS + L G
Sbjct: 150305 AYQEEAKEKNIGVHELLSEKANHQAPGESGL---------LALDWWNGNRSTLVDADLTG 150153
Query: 413 VITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQAC 472
++ + L T ++ L+ ATA+G R I+E F + G+ + + A GGIA KN +MQ
Sbjct: 150152 MLLGMTLLTKPEEIYRALVEATAYGTRMIIETFKESGVPIEELFAAGGIAEKNPFVMQIY 149973
Query: 473 CDVLNRPLQIVASDQCCA 490
DV N ++I S Q A
Sbjct: 149972 ADVTNMDIKISGSPQAPA 149919
gi|1769994|emb|Z75208.1|BSZ75208 B.subtilis genomic sequence 89009bp
Length = 89009
Score = 233 bits (589), Expect = 8e-60
Identities = 146/490 (29%), Positives = 237/490 (47%), Gaps = 8/490 (1%)
Frame = +3
Query: 1 MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRW-------QKGQFCDAPNNQFRHH 53
MA IG+DFG+ S RA+ V +GEE+A +V+ Y + GQ P + H
Sbjct: 18564 MAYTIGVDFGTLSGRAVLVHVQTGEELAAAVKEYRHAVIDTVLPKTGQ--KLPRDWALQH 18737
Query: 54 PRDYIESMEAALKTVLAELSVEQRAAXXXXXXXXXXXXXXXXXXXXXXLALRPEFAENPN 113
P DY+E +E + ++L + V+ + L + PE+ E P+
Sbjct: 18738 PADYLEVLETTIPSLLEQTGVDPKDIIGIGIDFTACTILPIDSSGQP-LCMLPEYEEEPH 18914
Query: 114 AMFVLWKDHTAVERSEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQS 173
+ LWK H A + ++ + ++ G RY GG SSEW K++ + + + ++
Sbjct: 18915 SYVKLWKHHAAQKHADRLNQIAEEEGEAFLQRY-GGKISSEWMIPKVMQIAEEAPHIYEA 19091
Query: 174 AASWIELCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRH 233
A IE DW+ L G+ ++R C+AG+K++W E G P FF++L+P +
Sbjct: 19092 ADRIIEAADWIVYQLCGS-----LKRSNCTAGYKAMWSEK-AGYPSDDFFEKLNPSMKTI 19253
Query: 234 LPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAG-AQPNALVKV 292
L + G+L + A+ GL ++ D H+ G +P ++ +
Sbjct: 19254 TKDKLSGSIHSVGEKAGSLTEKMAKLTGLLPGTAVAVANVDAHVSVPAVGITEPGKMLMI 19433
Query: 293 IGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWP 352
+GTSTC +L+ ++ + V G+CG VD ++PG+ G EAGQS GD + WF + P
Sbjct: 19434 MGTSTCHVLLGEEVHI----VPGMCGVVDNGILPGYAGYEAGQSCVGDHFDWFVKTCVPP 19601
Query: 353 LEQLAAQHPELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRSPNANQRLKG 412
Q A+ + S+K A E+ + LDW+NG RS + L G
Sbjct: 19602 AYQEEAKEKNIGVHELLSEKANHQAPGESGL---------LALDWWNGNRSTLVDADLTG 19754
Query: 413 VITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQAC 472
++ + L T ++ L+ ATA+G R I+E F + G+ + + A GGIA KN +MQ
Sbjct: 19755 MLLGMTLLTKPEEIYRALVEATAYGTRMIIETFKESGVPIEELFAAGGIAEKNPFVMQIY 19934
Query: 473 CDVLNRPLQIVASDQCCA 490
DV N ++I S Q A
Sbjct: 19935 ADVTNMDIKISGSPQAPA 19988
gi|1924929|emb|X89408|BSARAABD B.subtilis DNA for araA, araB and araD genes
Length = 4200
Score = 229 bits (578), Expect = 2e-58
Identities = 145/490 (29%), Positives = 236/490 (47%), Gaps = 8/490 (1%)
Frame = +1
Query: 1 MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRW-------QKGQFCDAPNNQFRHH 53
MA IG+DFG+ S RA+ V +GEE+A +V+ Y + GQ P + H
Sbjct: 1732 MAYTIGVDFGTLSGRAVLVHVQTGEELAAAVKEYRHAVIDTVLPKTGQ--KLPRDWALQH 1905
Query: 54 PRDYIESMEAALKTVLAELSVEQRAAXXXXXXXXXXXXXXXXXXXXXXLALRPEFAENPN 113
DY+E +E + ++L + V+ + L + PE+ E P+
Sbjct: 1906 FADYLEVLETTIPSLLEQTGVDPKDIIGIGIDFTACTILPIDSSGQP-LCMLPEYEEEPH 2082
Query: 114 AMFVLWKDHTAVERSEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQS 173
+ LWK H A + ++ + ++ G RY GG SSEW K++ + + + ++
Sbjct: 2083 SYVKLWKHHAAQKHADRLNQIAEEEGEAFLQRY-GGKISSEWMIPKVMQIAEEAPHIYEA 2259
Query: 174 AASWIELCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRH 233
A IE DW+ L G+ ++R C+AG+K++W E G P FF++L+P +
Sbjct: 2260 ADRIIEAADWIVYQLCGS-----LKRSNCTAGYKAMWSEK-AGYPSDDFFEKLNPSMKTI 2421
Query: 234 LPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAG-AQPNALVKV 292
L + G+L + A+ GL ++ D H+ G +P ++ +
Sbjct: 2422 TKDKLSGSIHSVGEKAGSLTEKMAKLTGLLPGTAVAVANVDAHVSVPAVGITEPGKMLMI 2601
Query: 293 IGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWP 352
+GTSTC +L+ ++ + V G+CG VD ++PG+ G EAGQS GD + WF + P
Sbjct: 2602 MGTSTCHVLLGEEVHI----VPGMCGVVDNGILPGYAGYEAGQSCVGDHFDWFVKTCVPP 2769
Query: 353 LEQLAAQHPELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRSPNANQRLKG 412
Q A+ + S+K A E+ + LDW+NG RS + L G
Sbjct: 2770 AYQEEAKEKNIGVHELLSEKANHQAPGESGL---------LALDWWNGNRSTLVDADLTG 2922
Query: 413 VITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQAC 472
++ + L T ++ L+ ATA+G R I+E F + G+ + + A GGIA KN +MQ
Sbjct: 2923 MLLGMTLLTKPEEIYRALVEATAYGTRMIIETFKESGVPIEELFAAGGIAEKNPFVMQIY 3102
Query: 473 CDVLNRPLQIVASDQCCA 490
DV N ++I S Q A
Sbjct: 3103 ADVTNMDIKISGSPQAPA 3156
gi|2905642|gb|AF045244|AF045244 Klebsiella pneumoniae ribitol kinase (rbtK) and ribitol transporter
(rbtT) genes, complete cds
Length = 3233
Score = 79.6 bits (193), Expect = 2e-13
Identities = 118/468 (25%), Positives = 191/468 (40%), Gaps = 24/468 (5%)
Frame = +2
Query: 5 IGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIESMEAA 64
IG+D GS SVRA V GE +A + ++ N+ R+ +++
Sbjct: 155 IGVDVGSGSVRA-GVFNLRGELLAHATREITLFRSA------GNKVEQSSREIWQAVCYC 313
Query: 65 LKTVLAELSVEQRAAXXXXXXXXXXXXXXXXXXXXXXLALRPEFAENPNAMFVLWKDHTA 124
+KT +A V + LA+ P +++ + ++W DH A
Sbjct: 314 IKTAVANAGVSP--SSIAGIGFDATCSLVVIGDNDAPLAVGP--SDDADRNIIVWMDHRA 481
Query: 125 VERSEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIELCDWV 184
++E+I H RY+GG S E KIL + + Q A + +L D++
Sbjct: 482 TGQAEKINATGHP-----VLRYVGGKISPEMQTPKILWLKENRPHIYQLARHFFDLADYL 646
Query: 185 PALLSGTTRPQDIRRGRCSAGHK--SLWHES-WGGLPPASFFDELDPILNRHLPSPLFTD 241
+G D R C+ K L HE W A +F ++ L F
Sbjct: 647 TWRSTG-----DEARSVCTVTCKWTYLAHEQRWD----AGYFRQIGL---EELVDEDFVR 790
Query: 242 TWTADIPVGT-----LCPEWAQRLGLPESVVISGGAFDCHMGAVGA----GAQPNALVKV 292
+ GT LC A+ +GLP ++ G D H G +G N + V
Sbjct: 791 IGQRIVDPGTPCGEGLCATAAEEMGLPIGTPVAVGMIDAHAGGIGTVGVLNGAVNNMAYV 970
Query: 293 IGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSW- 351
GTS+C + + V G+ G ++VPG+ E GQSA G A ++LS+
Sbjct: 971 FGTSSCTMTTTQEAVF----VPGVWGPYYSAMVPGYWLSEGGQSAAG---AAIDQLLSFH 1129
Query: 352 PLEQLAAQHPE-----LKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRSPNA 406
P A +H + L + + + +EA L +P F G R+P A
Sbjct: 1130PAAAEAREHAKAAGVPLPVWLADRVLTQVASPSEAVTLAAGLHVVPE----FLGNRAPLA 1297
Query: 407 NQRLKGVITDLNLATD---APLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIAR 463
+ K +I L + D L+ + +G R I++ GI N++ GG +
Sbjct: 1298DPHAKALIAGLGMERDLDNLTALYVAGLCGIGYGLRQIIDAQRACGIESENIVISGGAGQ 1477
Query: 464 K---NQVIMQAC 472
Q++ AC
Sbjct: 1478HPLVRQLLADAC 1513
gi|747879|emb|Z48758|SC9727 S.cerevisiae chromosome IV cosmid 9727
Length = 38813
Score = 66.3 bits (159), Expect = 2e-09
Identities = 126/478 (26%), Positives = 198/478 (41%), Gaps = 55/478 (11%)
Frame = -2
Query: 5 IGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIESMEAA 64
+G+D G+ S RA +D SG ++ + + R Q +N R+ ++
Sbjct: 10336 VGVDVGTGSARACVID-QSGNMLSLAEKPIKREQ------LISNFITQSSREIWNAVCYC 10178
Query: 65 LKTVLAELSVEQRAAXXXXXXXXXXXXXXXXXXXXXXLALRPEFAENPNAMFVLWKDHTA 124
++TV+ E V+ +A+ P+F N + +LW DH A
Sbjct: 10177 VRTVVEESGVDPERVRGIGFDATCSLVVVSATNFEE-IAVGPDFTNNDQNI-ILWMDHRA 10004
Query: 125 VERSEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIELCDWV 184
++ +EEI ++ G+ +Y+GG S E KI + A + +L D++
Sbjct: 10003 MKETEEI----NSSGD-KCLKYVGGQMSVEMEIPKIKWLKNNLEAGIFQDCKFFDLPDYL 9839
Query: 185 PALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELD---PILNRHLPSPLFTD 241
+G R CSA K G LP ++ LN S L +
Sbjct: 9838 TFKATGKEN-----RSFCSAVCKQ------GFLPVGVEGSDIGWSKEFLNSIGLSELTKN 9692
Query: 242 TW--------------TADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGA-GAQP 286
+ TA + L + A +LGL E V+S G D + G VG A+P
Sbjct: 9691 DFERLGGSLREKKNFLTAGECISPLDKKAACQLGLTEHCVVSSGIIDAYAGWVGTVAAKP 9512
Query: 287 NALVK---------------------VIGTSTCDILIADKQSVGERAVKGICGQVDGSVV 325
+ VK V GTSTC IL+ S V G+ G +
Sbjct: 9511 ESAVKGLAETENYKKDFNGAIGRLAAVAGTSTCHILL----SKNPIFVHGVWGPYRDVLA 9344
Query: 326 PGFIGLEAGQSAFGDIYAWFGRVLSWPLEQLAAQHP---ELKAQIN---ASQKQLLPALT 379
GF E GQS G + L+ L HP EL N S+ + L +
Sbjct: 9343 RGFWAAEGGQSCTGVL-----------LDHLITTHPAFTELSHMANLAGVSKFEYLNKIL 9197
Query: 380 EAWAKNPSL-------DHLPVVLDWFNGRRSPNANQRLKGVITDLNLATDAPLLFGGLIA 432
E + + HL D ++G RSP A+ ++ I ++ L ++
Sbjct: 9196 ETLVEKRKVRSVISLAKHLFFYGD-YHGNRSPIADPNMRACIIGQSMDNSIEDLAVMYLS 9020
Query: 433 ATAF---GARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPLQI 482
A F R I+E G +N + GG R N ++M+ D P+ I
Sbjct: 9019 ACEFISQQTRQIIEVMLKSGHEINAIFMSGGQCR-NSLLMRLLADCTGLPIVI 8864
gi|2895853|gb|AF045552|AF045552 Lactobacillus brevis xyl operon and xylose isomerase (xylA),
xylulokinase (xylB), and D-xylose proton-symporter (xylT)
genes, complete cds
Length = 5957
Score = 54.7 bits (129), Expect = 7e-06
Identities = 54/238 (22%), Positives = 98/238 (40%), Gaps = 1/238 (0%)
Frame = +3
Query: 250 GTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAG-AQPNALVKVIGTSTCDILIADKQSV 308
GT+ P +A+ GL + GGA D GAVGAG PN ++ IGTS + D V
Sbjct: 3369 GTVTPAYAEFSGLTTDTKVFGGAADNAAGAVGAGILHPNMVLSSIGTSGVVLKYEDNADV 3548
Query: 309 GERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWPLEQLAAQHPELKAQIN 368
V Q + +P A G + WF + + P E
Sbjct: 3549 NYHGVL----QFEDHAIPDKFYSMGVTLAAGYSFTWFKKTFA-PAEDFT----------- 3680
Query: 369 ASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRSPNANQRLKGVITDLNLATDAPLLFG 428
++ + ++ L + P ++ G R+P A+ ++G T ++
Sbjct: 3681 ----DVVASAAKSTVGANGLLYTPYIV----GERAPYADADIRGSFTGVDGTHQRYDFVR 3836
Query: 429 GLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQ 487
++ F R + + + + G + V+++GG A K+ + +Q D+ NR + + ++Q
Sbjct: 3837 AVLEGIIFSFRDLFDIYEENGGDFDTVVSIGGGA-KSPLWLQIQADIFNRKVVSLTNEQ 4010
gi|2293413|gb|AF007800|AF007800 Pseudomonas fluorescens mannitol operon, MtlE (mtlE), MtlF (mtlF),
MtlG (mtlG), MtlK (mtlK), mannitol dehydrogenase (mtlD),
xylulose kinase (mtlY) and fructokinase (mtlZ) genes,
complete cds
Length = 10031
Score = 52.3 bits (123), Expect = 4e-05
Identities = 103/483 (21%), Positives = 182/483 (37%), Gaps = 7/483 (1%)
Frame = +2
Query: 5 IGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIESMEAA 64
+G+D G+ +A+ +D +SG+ + + N + H ++++++ A
Sbjct: 6950 LGIDCGTQGTKAIVLDASSGKVLGLGAAAHT------LISGANGRREQHTQEWLDAFTEA 7111
Query: 65 LKTVLAELSVEQRAAXXXXXXXXXXXXXXXXXXXXXXLALRPEFAENPNAMFVLWKD-HT 123
L + V+ + LRP LW D T
Sbjct: 7112 THRALQQAGVDGQDILGIGVSGQQHGLVLLDDSGQ---VLRPA---------KLWCDTET 7255
Query: 124 AVERSEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIELCDW 183
A+E + L G+++ +G + + +K+L Q V A + D+
Sbjct: 7256 ALENERLLAYLGGEGGSLER---LGVAIAPGYTVSKLLWTREQHPDVFARIAHVLLPHDY 7426
Query: 184 VPALLSGTTRPQDIRRGRCSA-GHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFTDT 242
+ L+G + G S G+ ++ +W + +DP P +
Sbjct: 7427 LNYWLTGRAVAE---YGDASGTGYFNVRTRAWD----MALLKHIDPSGRLEAALPTLIE- 7582
Query: 243 WTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAG-AQPNALVKVIGTSTCDIL 301
AD VGT+ P A+RLG+ + +S G D MGA+G G P + +G+S
Sbjct: 7583 --ADQSVGTILPAIAERLGINPNARVSSGGGDNMMGAIGTGNIAPGVITMSLGSSGTVYA 7756
Query: 302 IADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWPLEQLAAQHP 361
AD+ +V +A G +P + +A G I F L+ L Q P
Sbjct: 7757 FADQPNVSPQASVATFCSSSGGWLPLICTMNL-TNATGVIRELFELDLN-AFNALVEQAP 7930
Query: 362 ELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRR---SPNANQRLKGV-ITDL 417
I A +LP L NG R P+A L G+ +T+L
Sbjct: 7931 -----IGADGVSMLPFL--------------------NGERVPALPHATGSLHGLTMTNL 8035
Query: 418 NLATDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLN 477
A L ++ T FG R ++ G+ ++ +GG K+ V Q D++N
Sbjct: 8036 TRAN----LCRAVVEGTTFGLRYGLDLLRHTGLQSQSIRLIGG-GSKSPVWRQMVADIMN 8200
Query: 478 RPLQIVASDQ 487
+++ ++Q
Sbjct: 8201 --TEVICTEQ 8224
gi|2634090|emb|Z99113|BSUB0010 Bacillus subtilis complete genome (section 10 of 21): from 1781201 to
2014980
Length = 233780
Score = 51.2 bits (120), Expect = 8e-05
Identities = 61/229 (26%), Positives = 96/229 (41%), Gaps = 6/229 (2%)
Frame = +3
Query: 249 VGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAG-AQPNALVKVIGTSTCDILIADKQS 307
VG+L P A + GL E + G D GA+GAG + IGTS +I +
Sbjct: 112089 VGSLLPHVAAKTGLLEKTKVYAGGADNACGAIGAGILSSGKTLCSIGTSG---VILSYEE 112259
Query: 308 VGERAVKGIC-----GQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWPLEQLAAQHPE 362
ER KG G+ D G + L AG S WF R +
Sbjct: 112260 EKERDFKGKVHFFNHGKKDSFYTMG-VTLAAGYS-----LDWFKRTFA------------ 112385
Query: 363 LKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRSPNANQRLKGVITDLNLATD 422
N S +QLL + L + P ++ G R+P+A+ ++G + ++ A +
Sbjct: 112386 ----PNESFEQLLQGVEAIPIGANGLLYTPYLV----GERTPHADSSIRGSLIGMDGAHN 112541
Query: 423 APLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLN 477
++ F +E F + G +V+ V+++GG A KN +Q D+ N
Sbjct: 112542 RKHFLRAIMEGITFSLHESIELFREAGKSVHTVVSIGGGA-KNDTWLQMQADIFN 112703
gi|1750106|gb|U66480|BSU66480 Bacillus subtilis SpoVK (spoVK), YnbA (ynbA), YnbB (ynbB), GlnR (glnR),
glutamine synthetase (glnA), YnaA (ynaA), YnaB (ynaB),
YnaC (ynaC), YnaD (ynaD), YnaE (ynaE), YnaF (ynaF), YnaG
(ynaG), YnaH (ynaH), YnaI (ynaI), YnaJ...
Length = 26114
Score = 51.2 bits (120), Expect = 8e-05
Identities = 61/229 (26%), Positives = 96/229 (41%), Gaps = 6/229 (2%)
Frame = +1
Query: 249 VGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAG-AQPNALVKVIGTSTCDILIADKQS 307
VG+L P A + GL E + G D GA+GAG + IGTS +I +
Sbjct: 20038 VGSLLPHVAAKTGLLEKTKVYAGGADNACGAIGAGILSSGKTLCSIGTSG---VILSYEE 20208
Query: 308 VGERAVKGIC-----GQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWPLEQLAAQHPE 362
ER KG G+ D G + L AG S WF R +
Sbjct: 20209 EKERDFKGKVHFFNHGKKDSFYTMG-VTLAAGYS-----LDWFKRTFA------------ 20334
Query: 363 LKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRSPNANQRLKGVITDLNLATD 422
N S +QLL + L + P ++ G R+P+A+ ++G + ++ A +
Sbjct: 20335 ----PNESFEQLLQGVEAIPIGANGLLYTPYLV----GERTPHADSSIRGSLIGMDGAHN 20490
Query: 423 APLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLN 477
++ F +E F + G +V+ V+++GG A KN +Q D+ N
Sbjct: 20491 RKHFLRAIMEGITFSLHESIELFREAGKSVHTVVSIGGGA-KNDTWLQMQADIFN 20652
gi|2905644|gb|AF045245|AF045245 Klebsiella pneumoniae D-arabinitol transporter (dalT), D-arabinitol
kinase (dalK), D-arabinitol dehydrogenase (dalD), and
repressor (dalR) genes, complete cds
Length = 5930
Score = 50.4 bits (118), Expect = 1e-04
Identities = 53/230 (23%), Positives = 91/230 (39%), Gaps = 2/230 (0%)
Frame = -2
Query: 251 TLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGA-QPNALVKVIGTSTCDILIADK-QSV 308
TL P+ A R GL SV+++GG D + A+G GA P +GTS ++ D +
Sbjct: 2596 TLDPQVAARWGLNASVMVAGGGGDNAVSAIGVGAVSPGDAFISLGTSGVLFVVTDAYRPA 2417
Query: 309 GERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWPLEQLAAQHPELKAQIN 368
+ AV C V+P + + WF R+ L A+ EL +
Sbjct: 2416 PQSAVHAFC-----HVLPNLWHQMSVMLSAASCLQWFCRLTGTTEVALLAEIAELSEEDK 2252
Query: 369 ASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRSPNANQRLKGVITDLNLATDAPLLFG 428
A + P L + +G R+P+ + +G+ + A+ L
Sbjct: 2251 A--------------------NAPFFLPYLSGERTPHNDPDARGIFWGMTHASLRAQLGY 2132
Query: 429 GLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPL 480
++ +FG ++ + G + +GG AR + Q D+L P+
Sbjct: 2131 AVLEGVSFGINDGLQALKESGTPIAQCSLVGGGAR-SPFWAQLLADILAMPV 1979
gi|2581794|gb|AF001974|AF001974 Thermoanaerobacter ethanolicus putative TrkG gene, partial cds, and
putative TrkA, xylose isomerase (xylA) and xylulose
kinase (xylB) genes, complete cds
Length = 5271
Score = 50.0 bits (117), Expect = 2e-04
Identities = 57/234 (24%), Positives = 91/234 (38%), Gaps = 2/234 (0%)
Frame = +3
Query: 250 GTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKV-IGTSTCDILIADKQSV 308
G + + A GL E ++ GG D GAVG G + +V + +GTS DK V
Sbjct: 4044 GYVTKDVADLTGLKEGTIVVGGGGDQASGAVGTGTVKSGIVSIALGTSGVVFASQDKYVV 4223
Query: 309 GER-AVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWPLEQLAAQHPELKAQI 367
E + C V G + SA + W ++++
Sbjct: 4224 DEENRLHSFCHANGKWHVMGVM-----LSAAACLKWWIDNIINF---------------- 4340
Query: 368 NASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRSPNANQRLKGVITDLNLATDAPLLF 427
N S L EA P+ L + L + G R+P ++ +G LN+ + +
Sbjct: 4341 NGSSITYEKLLEEAGKVTPASGGL-IFLPYLMGERTPYSDPYARGSFIGLNMTHNRGHIT 4517
Query: 428 GGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPLQIV 483
++ AFG R +E + I VN V GG A K+ + Q D+ + +V
Sbjct: 4518 RAILEGVAFGLRDSLEIIKELNIPVNEVRVSGGGA-KSVLWRQVLADIFGVRVDMV 4682
gi|2689305|gb|AE000982|AE000982 Archaeoglobus fulgidus section 125 of 172 of the complete genome
Length = 13099
Score = 43.8 bits (101), Expect = 0.014
Identities = 61/254 (24%), Positives = 101/254 (39%), Gaps = 2/254 (0%)
Frame = -2
Query: 233 HLPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVK- 291
+L L D + VG + A++LG+ + V+ G D A+ G VK
Sbjct: 10188 NLDLSLMPDLVNSGEVVGEIRGNVAEKLGISSNPVVVAGGGDQQCSALAQGVVEEGSVKS 10009
Query: 292 VIGTSTCDILIADKQSVGERAVKGICGQV-DGSVVPGFIGLEAGQSAFGDIYAWFGRVLS 350
GT T + +K V+G + V+PG E G + +W +
Sbjct: 10008 TTGTGTFMVAPVEK-------VRGHGDIIYSAHVLPGINVGEVSIFTTGSLLSWVKK--- 9859
Query: 351 WPLEQLAAQHPELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRSPNANQRL 410
A H E IN ++ + +L +F+G P+ N
Sbjct: 9858 ------AFYHGEGYDVINEEAEKSGVGARGVF-----------ILPFFSGAGCPHWNPEA 9730
Query: 411 KGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQ 470
KGVI L LA + + ++ A AF R+ +E ++GI++ + GG A +++ Q
Sbjct: 9729 KGVIFGLTLAHNRGDIARAVMEAVAFEVRSNIEVMENKGISIEELRLDGG-AANSRLWNQ 9553
Query: 471 ACCDVLNRPLQIVASD 486
DV R +V+SD
Sbjct: 9552 IFADVTGRKC-LVSSD 9508
gi|149604|gb|M57384|LBAXYLAA L.pentosus xylose repressor (xylR) gene, 3' end and D-xylose
isomerase (xylA) and D-xylulose kinase (xylB) genes,
complete cds.
Length = 4560
Score = 39.5 bits (90), Expect = 0.27
Identities = 97/486 (19%), Positives = 177/486 (35%), Gaps = 5/486 (1%)
Frame = +1
Query: 2 AIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHH-PRDYIES 60
A+ +G+D G+ +V+ A+D G +A + Y Q P+ + P D++
Sbjct: 2977 AVVLGIDLGTSAVKVSAID-KQGNVVAQASAKYALQQ-------PHPGYSEQDPEDWVTQ 3132
Query: 61 MEAALKTVLAELSVEQRAAXXXXXXXXXXXXXXXXXXXXXXLALRPEFAENPNAMFVLWK 120
A++ +L + V A LRP +LW
Sbjct: 3133 TTQAIRELLQQSEV---TADQIEGLSYSGQMHGLVLLDESATVLRPA---------ILWN 3276
Query: 121 DHTAVERSEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIEL 180
D + E+ + D+ + G + K+L V + + + A +++
Sbjct: 3277 DTRTTSQCREL----ESQFGDDFIKITGNRPLEGFTLPKLLWVKENEPNIWKRARTFLLP 3444
Query: 181 CDWVPALLSGTTR--PQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPL 238
D++ ++G D S W E+ ++LD L L PL
Sbjct: 3445 KDYLRYRMTGKLAMDKSDATGTVLLDITTSQWSET--------LCNQLDIPLT--LCPPL 3594
Query: 239 FTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAG--AQPNALVKVIGTS 296
T VG + +AQ GL + + GGA D GAVGAG + ALV IGTS
Sbjct: 3595 IEST----AYVGHINQTYAQLSGLSVNTKVFGGAADNAAGAVGAGILSSDKALVS-IGTS 3759
Query: 297 TCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLSWPLEQL 356
+ D R V Q + PG A G WF +Q
Sbjct: 3760 GVVLKYEDNAQTDYRGVL----QYERHAFPGKYYSMGVTLAAGYSLNWF--------KQT 3903
Query: 357 AAQHPELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRSPNANQRLKGVITD 416
A + + ++++ + A L P ++ G R+P A+ ++G
Sbjct: 3904 FAPDEDFGTVVASAEQSTIGA--------NGLLFAPYIV----GERAPYADATIRGSFIG 4047
Query: 417 LNLATDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVL 476
++ + ++ F +++ + G ++++GG A K+ + +Q D+
Sbjct: 4048 VDGSHQRADFVRAVLEGIIFSFEDLIKLYQHNGAEFKTIVSIGGGA-KSALWLQIQADIF 4224
Query: 477 NRPLQIVASDQ 487
N + + ++Q
Sbjct: 4225 NCKVVSLKNEQ 4257
gi|2618993|gb|AF027868|AF027868 Bacillus subtilis chromosome region between terC and odhAB
Length = 87500
Score = 36.4 bits (82), Expect = 2.3
Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 2/139 (1%)
Frame = -2
Query: 159 KILHVTRQDSAVAQSAASWIELCDWVPALLSG--TTRPQDIRRGRCSAGHKSLWHESWGG 216
K+ + ++ ++ + AS+ + DWV LSG T P ++ W E
Sbjct: 3613 KLYGLKQRQPSLWEKTASFTSISDWVTYQLSGILTYEPSQATETLLFDVKQNTWSEEMCD 3434
Query: 217 LPPASFFDELDPILNRHLPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCH 276
+ F + P L R A +GT+ E+A LGL + + G D
Sbjct: 3433 I--FGFSPSILPPLVR------------AGTAIGTIANEYASELGLSINAKVIAGGGDTQ 3296
Query: 277 MGAVGAGAQPNALVKVIGTST 297
+ GA +V V GT+T
Sbjct: 3295 LAVKSTGAGLEDIVIVSGTTT 3233
gi|2634230|emb|Z99114|BSUB0011 Bacillus subtilis complete genome (section 11 of 21): from 2000171 to
2207900
Length = 207730
Score = 36.4 bits (82), Expect = 2.3
Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 2/139 (1%)
Frame = -2
Query: 159 KILHVTRQDSAVAQSAASWIELCDWVPALLSG--TTRPQDIRRGRCSAGHKSLWHESWGG 216
K+ + ++ ++ + AS+ + DWV LSG T P ++ W E
Sbjct: 22704 KLYGLKQRQPSLWEKTASFTSISDWVTYQLSGILTYEPSQATETLLFDVKQNTWSEEMCD 22525
Query: 217 LPPASFFDELDPILNRHLPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCH 276
+ F + P L R A +GT+ E+A LGL + + G D
Sbjct: 22524 I--FGFSPSILPPLVR------------AGTAIGTIANEYASELGLSINAKVIAGGGDTQ 22387
Query: 277 MGAVGAGAQPNALVKVIGTST 297
+ GA +V V GT+T
Sbjct: 22386 LAVKSTGAGLEDIVIVSGTTT 22324
gi|1217635|emb|Z69923|HSL219F9A Human DNA sequence from cosmid L219F9, Huntington's Disease Region,
chromosome 4p16.3 contains hepatocyte growth factor (HGF)
precursor, ESTs, STSs and a CpG island
Length = 20556
Score = 36.4 bits (82), Expect = 2.3
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Frame = +2
Query: 180 LCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLF 239
+C + +LLSG P D RR C+ ++ G L P S+ + +L++
Sbjct: 7583 VCSYSCSLLSGAPSPADWRRPGCTEAGRA----GNGALGPHSYRPKQSRVLSKE-----G 7735
Query: 240 TDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCH-MGAVGAGAQPNALVKV 292
+TW P G C WA + + + CH +GA A A +L V
Sbjct: 7736 RETWPGPSPHGPCCCAWASEPSSSRNELATEDPCPCHSVGAAWAVAGGLSLAPV 7897
gi|957311|gb|S77512|S77512 LAMB2=laminin beta 2 chain [human, placenta, mRNA, 5642 nt]
Length = 5642
Score = 36.0 bits (81), Expect = 3.0
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Frame = +1
Query: 265 SVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKQSVGER-------AVKGIC 317
++++S G CHM GA A P ++K +G + +L+A + ++ R A++G
Sbjct: 2875 ALLVSTGTHGCHM---GASAGPVPVLKALGANGTLLLLATRMNIPSRLCATAGQAIRG-- 3039
Query: 318 GQVDGSVVP-GFIGLEAGQSAFGDIYAWFGRVLSWPL 353
D +VP G +G GQ A + + G + W L
Sbjct: 3040 --CDVKLVPLGTLGTHQGQVAGANCVSAVGTLTQWIL 3144
gi|3261664|emb|Z82098|MTCY3C7 Mycobacterium tuberculosis H37Rv complete genome; segment 149/162
Length = 35292
Score = 35.6 bits (80), Expect = 4.0
Identities = 20/49 (40%), Positives = 27/49 (54%), Gaps = 3/49 (6%)
Frame = -3
Query: 172 QSAASWIELCDWVP---ALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPA 220
+ A SW + CD A L+G+ R + GRC GH+SLWH + PA
Sbjct: 22798 RQAGSW*DSCDLADQRVAQLAGSVRR*GHQHGRCR-GHESLWHRACSACRPA 22646
gi|1702970|gb|AD000003|MSGY244 Mycobacterium tuberculosis sequence from clone y244
Length = 37186
Score = 35.6 bits (80), Expect = 4.0
Identities = 20/49 (40%), Positives = 27/49 (54%), Gaps = 3/49 (6%)
Frame = +1
Query: 172 QSAASWIELCDWVP---ALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPA 220
+ A SW + CD A L+G+ R + GRC GH+SLWH + PA
Sbjct: 29863 RQAGSW*DSCDLADQRVAQLAGSVRR*GHQHGRCR-GHESLWHRACSACRPA 30015
gi|4512311|dbj|AB019441.1|AB019441 Homo sapiens DNA for immunoglobulin heavy-chain variable region, complete
sequence, 5 of 5
Length = 157090
Score = 34.8 bits (78), Expect = 6.8
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 180 LCDWVPALLSGTTRPQDIRRGRCSAGHKSLW-HESWG 215
LCDW PA S RPQ + R G K W H+SWG
Sbjct: 133104 LCDWPPASSSSLPRPQSLCCPR--KGRKGQWPHQSWG 133000
gi|1702966|gb|AD000002|MSGY154 Mycobacterium tuberculosis sequence from clone y154
Length = 40221
Score = 34.8 bits (78), Expect = 6.8
Identities = 25/66 (37%), Positives = 33/66 (49%), Gaps = 9/66 (13%)
Frame = -3
Query: 194 PQDIR--RGRCSAGHKSLWHESWGGLPPASFFDELD-------PILNRHLPSPLFTDTWT 244
PQ +R R C+A + + WGG P +F ELD P++ P P T
Sbjct: 17944 PQWVRHIRDTCTAADVPFFFKQWGGRTPKAFGRELDGRCWDEMPLIEIRNPDPRTTSRVH 17765
Query: 245 ADIPVGTLCPEWAQR 259
AD + T E AQR
Sbjct: 17764 ADPMLATAPTESAQR 17720
gi|1770449|emb|X97051.1|HSIMMDL DNA sequence of the human immunoglobulin D segment locus
Length = 92588
Score = 34.8 bits (78), Expect = 6.8
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 180 LCDWVPALLSGTTRPQDIRRGRCSAGHKSLW-HESWG 215
LCDW PA S RPQ + R G K W H+SWG
Sbjct: 62645 LCDWPPASSSSLPRPQSLCCPR--KGRKGQWPHQSWG 62541
gi|2329908|gb|AC002126|AC002126 Homo sapiens DNA from chromosome 19-cosmids R30102:R29350:R27740
containing MEF2B, genomic sequence, complete sequence
[Homo sapiens]
Length = 89818
Score = 34.8 bits (78), Expect = 6.8
Identities = 27/74 (36%), Positives = 37/74 (49%), Gaps = 3/74 (4%)
Frame = +2
Query: 221 SFFDELDPILNRH-LPS-PLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGG-AFDCHM 277
S F LDP + H +PS PLF TW AD V L + L LP + SG + C++
Sbjct: 71 SAFQPLDPTFSPHVMPSDPLFLPTW*ADHSVSCLAVFLRRSLTLPPRLECSGTISAHCNL 250
Query: 278 GAVGAGAQPNALVKVIG 294
+G+ P + V G
Sbjct: 251 HFLGSSHSPASASLVAG 301
gi|5123528|emb|AL079332.1|SCI5 Streptomyces coelicolor cosmid I5
Length = 6661
Score = 34.8 bits (78), Expect = 6.8
Identities = 65/215 (30%), Positives = 86/215 (39%), Gaps = 8/215 (3%)
Frame = +3
Query: 190 GTTR-PQDIRRGRC-SAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFTDTWTADI 247
GT R P R GR SAGH ++ H GGL + + + L L D T D+
Sbjct: 5856 GTLRHPATYRVGRSRSAGH-AVAHGPQGGLGAVREVEFHQDVRDVGLHRLLGEDEGTRDL 6032
Query: 248 PVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKQS 307
PVG AQ L LP + GA A AQ A + +G +
Sbjct: 6033 PVGAAVRYQAQHLALP----LREGARPARPRAALLLAQEGA--RDLGLEQDVPGVDGADG 6194
Query: 308 VGERAVKGICGQVDGSVVP-----GFIGLEAGQSAFGDIYAWFGRVLSWPLEQLAAQHPE 362
G+R + V G P G + EAG D +A L+ P +++ A H
Sbjct: 6195 PGQRVGVDVLVHVSGRARPQGRDHGALLGEAGD----DQHARVVVQLAEPAQRVDAVHAR 6362
Query: 363 -LKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRSP 404
L + QLL A+ A DHL VVL G +SP
Sbjct: 6363 HLDVHEDHVGLQLLGAVDALGAVRGLADHLDVVLYLQEGAQSP 6491
gi|3261838|emb|Z98209|MTCY154 Mycobacterium tuberculosis H37Rv complete genome; segment 121/162
Length = 13935
Score = 34.8 bits (78), Expect = 6.8
Identities = 25/66 (37%), Positives = 33/66 (49%), Gaps = 9/66 (13%)
Frame = +1
Query: 194 PQDIR--RGRCSAGHKSLWHESWGGLPPASFFDELD-------PILNRHLPSPLFTDTWT 244
PQ +R R C+A + + WGG P +F ELD P++ P P T
Sbjct: 12790 PQWVRHIRDTCTAADVPFFFKQWGGRTPKAFGRELDGRCWDEMPLIEIRNPDPRTTSRVH 12969
Query: 245 ADIPVGTLCPEWAQR 259
AD + T E AQR
Sbjct: 12970 ADPMLATAPTESAQR 13014
gi|2406564|gb|U68140|HSU68140 Homo sapiens nuclear VCP-like protein NVLp.2 (NVL.2) mRNA, complete
cds
Length = 2907
Score = 34.4 bits (77), Expect = 8.9
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +2
Query: 180 LCDWV---PALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFF 223
LCD + +S RP+D RG+C +G + + + W G PA F+
Sbjct: 2081 LCDIL**SGCFMSSKIRPRD--RGKCPSGESATYRDGWSGSTPAGFY 2215
gi|4505482|ref|NM_002533.1|NVL| Homo sapiens nuclear VCP-like (NVL) mRNA
>gi|2406579|gb|U78772|HSU78772 Homo sapiens nuclear
VCP-like protein NVLp.1 (NVL.1) mRNA, complete cds
Length = 2801
Score = 34.4 bits (77), Expect = 8.9
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +2
Query: 180 LCDWV---PALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFF 223
LCD + +S RP+D RG+C +G + + + W G PA F+
Sbjct: 1994 LCDIL**SGCFMSSKIRPRD--RGKCPSGESATYRDGWSGSTPAGFY 2128
CPU time: 0.45 user secs. 0.09 sys. secs 0.54 total secs.
Database: Non-redundant GenBank+EMBL+DDBJ+PDB sequences
Posted date: Oct 8, 1999 4:58 PM
Number of letters in database: 1,336,120,306
Number of sequences in database: 482,057
Lambda K H
0.321 0.136 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 850621016
Number of Sequences: 482057
Number of extensions: 14690159
Number of successful extensions: 69389
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 69321
Number of HSP's gapped (non-prelim): 102
length of query: 490
length of database: 445,373,435
effective HSP length: 55
effective length of query: 435
effective length of database: 418,860,300
effective search space: 182204230500
effective search space used: 182204230500
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 77 (34.4 bits)
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