The Sanger Centre blast servers are
 Please note that as of 12/11/96 the C. elegans genomic sequence database will contain all finished genomic sequences as well as the unfinished sequences from BOTH the St. Louis and Sanger Centre sequencing groups. Unfinished sequences from St. Louis can also be downloaded from the Sanger Centre ftp site Please note that unfinished sequences will contain errors, including possibly contamination from other sources e.g. vector, E. coli and yeast sequences
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TBLASTN 2.0a13MP-WashU [10-Jun-1997] [Build 23:08:22 Jun 10 1997]
Reference: Gish, Warren (1994-1997). unpublished.
Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W. Myers, and David J.
Lipman (1990). Basic local alignment search tool. J. Mol. Biol. 215:403-10.
Notice: statistical significance is estimated under the assumption that the
equivalent of one complete reading frame of the database codes for protein and
that significant alignments will involve only coding reading frames.
Query= query_seq
(247 letters)
Database: allcmid
3629 sequences; 104,258,665 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
Reading High Probability
Sequences producing High-scoring Segment Pairs: Frame Score P(N) N
H37A05 EMBL:AL021346 -1 205 6.3e-28 2
>H37A05 [Full Sequence] [EMBL:AL021346] [Webace] EMBL:AL021346
Length = 31,226
Minus Strand HSPs:
Score = 205 (72.2 bits), Expect = 6.3e-28, Sum P(2) = 6.3e-28
Identities = 39/93 (41%), Positives = 63/93 (67%), Frame = -1
Query: 124 ALHREVIEKKPEVFKVACLSDIQQLFLPHGQPFYAAFGNRPNDVFAYRQVGLPESRIFTV 183
++ REVIE++PE FK+A L+D++QLF P G PFYA FGNR DV +Y V +P +RI +
Sbjct: 22601 SIFREVIERRPEEFKIAALTDLKQLF-PSGNPFYAGFGNRITDVVSYEAVAVPAARILII 22425
Query: 184 NPRGELIQELIKNHKSTYERLG-EVVELLFPPVA 216
+P G++ + +Y+ + + V+ +FPP++
Sbjct: 22424 DPSGKVKRSDSSGLALSYKSMASDTVDYMFPPLS 22323
Score = 157 (55.3 bits), Expect = 6.3e-28, Sum P(2) = 6.3e-28
Identities = 30/65 (46%), Positives = 45/65 (69%), Frame = -2
Query: 67 IAEPRTEINSNGYKFLYCSARAIGMADLTKGYLQWVSEGGCSLPKGPILLSPSSLFSALH 126
+AE T I +NGYK +Y S+RAIG + TK YL+ V++ LP GP+LLSP+S+ +A
Sbjct: 22822 VAELYTRIKNNGYKMVYLSSRAIGQSHTTKQYLKSVAQDSKQLPDGPVLLSPTSIITAFR 22643
Query: 127 REVIE 131
R +++
Sbjct: 22642 RYILK 22628
Parameters:
P=6
B=50
filter=seg
ctxfactor=6.00
E=10
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.138 0.420 same same same
q=9 r=2 0.244 0.0300 0.180
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 247 238 10. 71 3 13 22 0.058 37
32 0.060 41
Statistics:
Database: allcmid
Title: allcmid
Release date: unknown
Posted date: 10:20 AM BST Oct 12, 1999
Format: BLAST
# of letters in database: 104,258,665
# of sequences in database: 3629
# of database sequences satisfying E: 1
No. of states in DFA: 504 (107 KB)
Total size of DFA: 154 KB (192 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 39.50u 2.05s 41.55t Elapsed: 00:00:14
Total cpu time: 39.53u 2.11s 41.65t Elapsed: 00:00:14
Start: Tue Oct 12 23:23:20 1999 End: Tue Oct 12 23:23:34 1999
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