Helicobacter pylori Genome
Sequence Search
Query = Query
Database Name %Match %Id %Sim
Helicobacter_pylori_813_main 94.5 93.5 96.3
Helicobacter_pylori_813_main 14.1 25.0 52.0
Helicobacter_pylori_813_main 4.7 40.9 68.2
Helicobacter_pylori_813_main 4.4 28.9 47.4
Helicobacter_pylori_813_main 4.2 26.9 52.7
Helicobacter_pylori_813_main 4.2 40.0 75.0
Helicobacter_pylori_813_main 4.1 29.5 50.8
Helicobacter_pylori_813_main 4.1 23.7 52.6
Helicobacter_pylori_813_main 4.1 36.6 56.1
Helicobacter_pylori_813_main 4.0 26.2 54.8
Helicobacter_pylori_813_main 4.0 32.0 72.0
Helicobacter_pylori_813_main 4.0 33.3 56.2
Helicobacter_pylori_813_main 4.0 34.5 62.1
Helicobacter_pylori_813_main 3.9 29.2 70.8
Helicobacter_pylori_813_main 3.9 32.3 61.3
Helicobacter_pylori_813_main 3.8 39.1 56.5
Helicobacter_pylori_813_main 3.8 28.2 61.5
Helicobacter_pylori_813_main 3.7 44.4 61.1
Helicobacter_pylori_813_main 3.7 28.0 48.0
Helicobacter_pylori_813_main 3.7 30.5 52.5
Helicobacter_pylori_813_main 3.6 63.6 90.9
Helicobacter_pylori_813_main 3.6 28.6 46.9
Helicobacter_pylori_813_main 3.6 40.0 66.7
Helicobacter_pylori_813_main 3.6 40.0 60.0
Helicobacter_pylori_813_main 3.6 47.1 58.8
Helicobacter_pylori_813_main 3.5 42.1 68.4
Helicobacter_pylori_813_main 3.5 31.8 68.2
Helicobacter_pylori_813_main 3.5 44.4 72.2
Helicobacter_pylori_813_main 3.5 36.8 73.7
Helicobacter_pylori_813_main 3.5 33.3 48.5
Helicobacter_pylori_813_main 3.5 40.0 52.0
Helicobacter_pylori_813_main 3.5 21.7 65.2
Helicobacter_pylori_813_main 3.5 29.9 55.2
Helicobacter_pylori_813_main 3.4 75.0 87.5
Helicobacter_pylori_813_main 3.4 20.6 39.7
Helicobacter_pylori_813_main 3.4 40.0 80.0
Helicobacter_pylori_813_main 3.4 28.8 48.1
Helicobacter_pylori_813_main 3.4 36.8 73.7
Helicobacter_pylori_813_main 3.3 42.1 57.9
Helicobacter_pylori_813_main 3.3 29.6 59.3
Helicobacter_pylori_813_main 3.3 40.0 60.0
Helicobacter_pylori_813_main 3.2 22.9 48.6
Helicobacter_pylori_813_main 3.2 33.3 54.2
Helicobacter_pylori_813_main 3.2 32.3 58.1
Helicobacter_pylori_813_main 3.0 66.7 77.8
Helicobacter_pylori_813_main 2.5 29.2 37.5
Helicobacter_pylori_813_main 2.5 33.3 55.6
Helicobacter_pylori_813_main 2.2 25.6 48.7
Helicobacter_pylori_813_main(687928 - 688578 of 1667867)
Query(1 - 217 of 217)
%Match = 94.5
%Identity = 93.5 %Similarity = 96.3
Matches = 203 Mismatches = 8 Conservative Sub.s = 6
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = 1 [217, 0, 0]
agagcgggtcccctggaatgcaccatcagtggtggggatgcttagcgctaacttaagcaaggtacagtggctgtgggact
tagaattctaaagtccaaaacaggtcaaagacttatggtcccctgtacgattttaaagtaaatactcggcttgtagcgat
gcaaagttagcaattaaacttttttcagtgatgtaggaacttacgtaagagtagatacgaataaggcgggtttggagctt
687957 687987 688017 688047 688077 688107 688137 688167
MDREQVVALQHQRFAAKKYDPNRRISQKDWEALVEVGRLAPSSIGLEPWKMLLLKNERMKEDLKPMAWGALFGLEGASHF
|||||::|||||||| ||||||||||:|||| ||||||||||||||||||||||||||||||||||||| | |||||||
MDREQIIALQHQRFATKKYDPNRRISEKDWEVLVEVGRLAPSSIGLEPWKMLLLKNERMKEDLKPMAWGGLSSLEGASHF
10 20 30 40 50 60 70 80
gatcgcaggatgagtgaagacggaaagtgaatatgcaaaatcgagaacaagctttgtgaacatacagaaaagggatgagt
ttatcgagtcaagaataattaataagaaacacgtcattaataaaatatagagcttagcgaacatatcatttcccttgtac
ctttgaactttcctctaaggtgtaagttctttgctaccatcagctgactcaatgttgtcggttcaggcgggagcgagttt
688197 688227 688257 688287 688317 688347 688377 688407
VIYLARKGVTYDSDYVKKVMHEVKKRDYDTNSRFAQIIKNFQENDMKLNSERSLFDWASKQTYIQMANMMMAAAMLGIDS
||||||||||||||||||||||||||||||:||||||||||||||||| ||||||||||||||||||||||||||||||
VIYLARKGVTYDSDYVKKVMHEVKKRDYDTHSRFAQIIKNFQENDMKLTDERSLFDWASKQTYIQMANMMMAAAMLGIDS
90 100 110 120 130 140 150 160
tcaggtgcgagggttggagtcaaggtggtgagttgtcacgaacaactaaggatggag
gctagaaaaatacataaagataccatgtcttcgtgagaaatccacggacattaatta
cgtagttaaaggttagaactgcggatcggagttttttcaacctaccggaatttagta
688437 688467 688497 688527 688557
CPIEGYDQEKVEAYLEEKGYLNTAEFGVSVMACFGYRNQEITPKTRWKTEVIYEVIE
|||||||||||||||:|||||:|||||||||| ||||||||||||||||||||||||
CPIEGYDQEKVEAYLKEKGYLDTAEFGVSVMASFGYRNQEITPKTRWKTEVIYEVIE
170 180 190 200 210
Helicobacter_pylori_813_main(1014176 - 1013574 of 1667867)
Query(1 - 211 of 217)
%Match = 14.1
%Identity = 25.0 %Similarity = 52.0
Matches = 51 Mismatches = 93 Conservative Sub.s = 55
Gaps = 5 InDels = 42 Frame Shifts = 0
Primary Frame = -1 [199, 0, 0]
ataattgcgaaacttagccttaatgactgttaagtggaggagactcattaacctctgagagagtaacaggcattaggaaa
actattaaaaggattaagacgattagaaatcgcataatcatcgtccgcaacacgattttcaaataaatccagataaatta
aagatgtaaaaaaaacgcttcggttcttgttcaaaaactaccgagactccggagttggtttgtaaaatagcctctaggta
1014162 1014132 1014102 1014072 1014042 1014012 1013982 1013952
KSMKFLDQEKRRQLLNERHSCKMFDSHYEFSSTELEEIAEIARLSPSSYNTQPWHFVMVTDKDLKKQIAAHSYFNEEMIK
:|:|: | ::| : | :| : | : | : |: ||:||| :|| ::: :: :|: : :: ::
MDREQIIALQHQRFATKKYDPNRRISEKDWEVLVEVGRLAPSSIGLEPWKMLLLKNERMKEDLKPMAWGGLSSLE
10 20 30 40 50 60 70
agtgtaggtttacagttccgctacactcgtta gagacttgcacggatacaac atgatatgcttagggcatagg
gcccttttgctgcgattcagaataatacacaa tgttcctcattgtgtaagta gtagattaagatctgatgtgt
ctagaggactaaccggaaccccgatctggtta tagcctttagtcgaccccga aaacttagactctggatcgcg
1013922 1013892 1013862 1013838 1013808 1013793 1013763 1013733
SASALMVVCSLRPSELLPHGHYMQNLYPESYK--VRVIPSFAQMLGVRFNHSMQ-----RLESYILEQCYIAVGQICMGV
|| : | | : |:: : | | |||:: : |: | : :| || : : |
GASHF--VIYLARKGVTYDSDYVKKVMHEVKKRDYDTHSRFAQIIKNFQENDMKLTDERSLFDWASKQTYIQMANMMMAA
90 100 110 120 130 140 150
atagtgataaggtgctaggggtggc aaacaagttagtgaaggggacata atagggaattttaaaaatta
gttgtaggttggtactatgattaag taacatcgttctgagtcacgaacg acatactcgtgtaataattc
cagagttcttactttaggcataagt ctgtacacgctgcgggaagtaaaa aaattgttggaacacactat
1013703 1013673 1013655 1013625 1013595 1013568 1013538
SLMGLDSCIIGGFDPLKVGEVLEER----INKPKIACLIALGKRVAEASQKSR-KSKVDAITWL*LNKIKNFLT
:::|:||| | |:| || |:|: : :: : ::| | | : |:| |::|
AMLGIDSCPIEGYDQEKVEAYLKEKGYLDTAEFGVSVMASFGYRNQEITPKTRWKTEVIYEVIE
170 180 190 200 210
Helicobacter_pylori_813_main(1282747 - 1282812 of 1667867)
Query(14 - 35 of 217)
%Match = 4.7
%Identity = 40.9 %Similarity = 68.2
Matches = 9 Mismatches = 7 Conservative Sub.s = 6
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = 1 [22, 0, 0]
ttgggatcaccactaacgtgcaagtggagtaagtgttctttcgccatttatttggatttaattggttattagctt
cttattctctttcttctccacagctaaaagattaattatccctgttattgtgttgtattgttagtctcataggtc
ttgaggtatcggttctctctttgtactatgagttttcttatctttgtctttcgggttgcggttggtcttgagttc
1282737 1282767 1282797 1282827 1282857 1282887 1282917
SFVEVMSLTLLMPFITLASDPNRALDDKDWKMVYDFFHFSSPVRLMYFFSFCLVGIYLFRMFYGVSFTYLKGRFS
| | |||| : :|||::: :
MDREQIIALQHQRFATKKYDPNRRISEKDWEVLVEVGRLAPSSIGLEPWKMLLLKNERMKEDLKPMAWGGLSSLE
10 20 30 40 50 60 70
Helicobacter_pylori_813_main(1544336 - 1544106 of 1667867)
Query(63 - 184 of 217)
%Match = 4.4
%Identity = 28.9 %Similarity = 47.4
Matches = 22 Mismatches = 38 Conservative Sub.s = 14
Gaps = 2 InDels = 153 Frame Shifts = 0
Primary Frame = -1 [74, 0, 0]
taaggcatgaaaaacttgcgatagttcaccttagaagaatacatgtaacaatctaagatctatactatgcgtaagaaggt
tttaacctcaaaactctcaactcttaaaacatcgaatattacatctagcattactgcttatttactcggtgcccagtcat
ttatctatttaatctgcgactctgttaaatttactgtataaaattcactatattacgtaattaacatggactaaactggt
1544493 1544463 1544433 1544403 1544373 1544343 1544313 1544283
FIIDDPTFANKKNTLSFAQDTFTVFYQKQPYFTGNKVKILKPKFAFKSPKILHSISAILQFILKPLTWGLGSTTESIAEF
|||: || |: | : |
MDREQIIALQHQRFATKKYDPNRRISEKDWEVLVEVGRLAPSSIGLEPWKMLLLKNERMKEDLKPMAWGGLSSLEGASHF
10 20 30 40 50 60 70 80
attcccaca gagcacggagtgtagataggcgc
atctctacc cacactaatatattaattcataa
attacaacc tctactgtttttcgaacacatgg
1544247 1544217 1544187
KFSLPLKPT------------------------------------------------ANAQTLEDIDFDFMEKFIAELEQ
| | |: || : | : ::
VIYLARKGVTYDSDYVKKVMHEVKKRDYDTHSRFAQIIKNFQENDMKLTDERSLFDWASKQTYIQMANMMMAAAMLGIDS
90 100 110 120 130 140 150 160
tccggcgctccggccgttagagcgaaactagggagcagtaatgggggaactgtatcatatggttgag
ggtcataaggtcatacataccgtaacctcaaaaactattaacgggggaccggtcgagtgtgattata
tgccatggtgccatgttaatagaacccttctaacctttctttggggttcaccaagactaagtgtata
1544157 1544127 1544097 1544067 1544037 1544007
CRLAELEQCRLAELQAYLKATGLENTTLSNDEENALNVFNNSGGGGGNTPCGLTWQSFRLGDLFEIE
| : :| :::|||| | :|
CPIEGYDQ---EKVEAYLKEKGYLDTAEFGVSVMASFGYRNQEITPKTRWKTEVIYEVIE
170 180 190 200 210
Helicobacter_pylori_813_main(1009741 - 1009451 of 1667867)
Query(111 - 200 of 217)
%Match = 4.2
%Identity = 26.9 %Similarity = 52.7
Matches = 25 Mismatches = 39 Conservative Sub.s = 24
Gaps = 5 InDels = 33 Frame Shifts = 0
Primary Frame = -2 [0, 88, 0]
gtaggtaacaagtgaggactactcaagaaacgcagcgacttgtgcgtttactagtacagtaagtggtaagcactgt cct
atacataccagggaataattaaaaataaactacaaacaactcaaacatcagtacttaaataactattcacatctat gga
tagttacgatcgcaagttttgtcctaaccctgtatctgtgattatttttacgatcctctaacctataacgactgaa ccc
1009844 1009814 1009784 1009754 1009724 1009694 1009664 1009637
DLKADLNTPNSGCEKVDNLFKHYHNIENNTLEPKDHAKHSLAYEHAYFSKRLKAFIHNDLKNAFEVLTNAQIPLEL-RRY
|: |:: :| | ||:| ||: : :: :
AWGGLSSLEGASHFVIYLARKGVTYDSDYVKKVMHEVKKRDYDTHSRFAQIIKNFQENDMK-----LTDERSLFDWASKQ
80 90 100 110 120 130 140
gtagagcagaaaggtagtagacgatgagtgatttagttgat taagataatgctaaggtgaagttacgcagca
cttatcaagaaaattactactaaataaagtacttacttaac tacactatcatgaatgaaaaaatatcaacaa
ttaaccaaccaagtagtgtggagcgtagcggttaacttaat gcactaatagtcaggttcgtttggcaaagaa
1009607 1009577 1009547 1009517 1009490 1009460 1009430
AFIEIAQKGNKKEVLKALNAMQENLDKECVKSFLKAFFEKS-LNTDTLKISELCKKVGYDKNDYLKLAQKAQK
:|::| :| : | |:| |:::|| || |:| : :| : || :
TYIQMANMMMAAAMLGIDSCPIEGYDQEKVEAYLK---EKGYLDTAEFGVS-VMASFGYRNQEITPKTRWKTEVIYEVIE
160 170 180 190 200 210
Helicobacter_pylori_813_main(1528973 - 1528914 of 1667867)
Query(53 - 72 of 217)
%Match = 4.2
%Identity = 40.0 %Similarity = 75.0
Matches = 8 Mismatches = 5 Conservative Sub.s = 7
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -1 [20, 0, 0]
acctttaaagagactaacagtagagaaaggtagtgtagtgtgtaattcaacaacggacaatttaggtataaaacatcgtt
agctatttaaaaaatatagatttaaataaatagtaggatcggccgtactccgccaagtaagtaagggacctgtcactcgt
accgtgccatgtgacacactagatagtgcttagagggtataaacttgctaactaagggatgtggcgaaacgcgacgagga
1529004 1528974 1528944 1528914 1528884 1528854 1528824 1528794
KRPLYLIIKDKDKQFKIQSDLMVNEKIKDDFKGLEWRDLA*GSTSF*PITPSTPEERLKNWF*KGG*KSTMSMPNSLAWL
|: ||::|:|:| : | |:
LVEVGRLAPSSIGLEPWKMLLLKNERMKEDLKPMAWGGLSSLEGASHFVIYLARKGVTYDSDYVKKVMHEVKKRDYDTHS
50 60 70 80 90 100 110
Helicobacter_pylori_813_main(1505456 - 1505276 of 1667867)
Query(4 - 66 of 217)
%Match = 4.1
%Identity = 29.5 %Similarity = 50.8
Matches = 18 Mismatches = 29 Conservative Sub.s = 13
Gaps = 1 InDels = 10 Frame Shifts = 1
Primary Frame = -1 [49, 11, 0]
cagggaaaagatcaatatactataaggagtgaagtagggtagaccgccgttagt agccagataccttaggatttcg
tgagaacttaatacttgcgaaataggtaatgatattatgtcagaacaaatggta aagtaaatacttaggccgaaac
tctctacttgagcgtaagcttagtgtgtaacagttgattcaccaactaatgctt gcccaagtcgtatgccgttgcag
1505442 1505412 1505382 1505352 1505322 1505303 1505273 1505243
LSDGDKTIIEKLHTILRSSHYKLNRGVNELGKMDFMEVGFTDSQQAHQEFWSVY--- NDRLKENFKPLF*SGATC*YQA
: || | : : | || ::| ::||| | | : |:|:||::||:
MDREQIIALQHQRFATKKYDPNRRISEKDWEVLVEVGRLAPSSIGLEPWKMLLLK_NERMKEDLKPMAWGGLSSLEGA
10 20 30 40 50 60 70
atgagagcttccatgtaagaaatcactga
tgaagaggtcctacgaagtaatatatgga
gagaaggttacaatggaacgttgagtgcg
1505213 1505183
M*EKGKGRFSPLKSG*KRVKNI*LKLWGK
SHFVIYLARKGVTYDSDYVKKVMHEVKKR
90 100
Helicobacter_pylori_813_main(1054025 - 1053912 of 1667867)
Query(92 - 129 of 217)
%Match = 4.1
%Identity = 23.7 %Similarity = 52.6
Matches = 9 Mismatches = 18 Conservative Sub.s = 11
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -1 [38, 0, 0]
agaagagagtacatagtgaagctagtcaaacccaacgagtgagggataggtcgctggaaagaatagcgaagtagggaatg
aataaacattgaattctataaacaatcaaaatacttaactaagcagttaagaagtggtggaacaactgtaaagaagattc
aataaatatagaatgttagaactaacatagatacgtgcttttatatttttgcactgtatagtttaatctaatttaagaat
1054242 1054212 1054182 1054152 1054122 1054092 1054062 1054032
KEIKEKAKVLRQKFMAFEMKEHSKEFPNKKQLQTMLENAFDNGAESFIDDWHERFGGISRENTYKALGIKEYSDEGKILA
QHQRFATKKYDPNRRISEKDWEVLVEVGRLAPSSIGLEPWKMLLLKNERMKEDLKPMAWGGLSSLEGASHFVIYLARKGV
20 30 40 50 60 70 80
tggaataactaagtggaatgaacattgagaagggagtaaattacatcccataaaactataagttaaagcaaaaagtgagt
tgaggatgaaaaataagcaacgactcctcatggaaaaatcgtacaaatagcaatacttcacattattatcataaaattgg
tcaatttaataattaacttttaacattgttgtcacttattgaacatgcttatttacagacaggatgagactcaaattgct
1054002 1053972 1053942 1053912 1053882 1053852 1053822 1053792
FGERSYIRQYKKDFEESTYDTRQTLSAMANMGGENDYKITWLKPKYQLHSSNNIKPLMSNTELLNMIELTNIKKEYVMGC
: |::: : :: ||| :: : ||| |:|
TYDSDYVKKVMHEVKKRDYDTHSRFAQIIKNFQENDMKLTDERSLFDWASKQTYIQMANMMMAAAMLGIDSCPIEGYDQE
100 110 120 130 140 150 160
Helicobacter_pylori_813_main(595766 - 595647 of 1667867)
Query(108 - 147 of 217)
%Match = 4.1
%Identity = 36.6 %Similarity = 56.1
Matches = 15 Mismatches = 16 Conservative Sub.s = 8
Gaps = 2 InDels = 6 Frame Shifts = 0
Primary Frame = -1 [39, 0, 0]
aagaggctaaagggctgggactagtgacattttgaacgacttactctggattactttcacatcggcttcgaatactgttt
agaaatcttagtggatatataaagtgtaattttcaccatctaaaaaatatagcccagccctaggtcttacataagtataa
cagaagctctcgcgattggcacactccctatcccgcaggtttcacgttagtcgtgtccgttttcgactagcgtctttctc
595974 595944 595914 595884 595854 595824 595794 595764
NREKEVPFINSVGGQFDVEIQYKGFGIHNLFFFAKTPEMPFYNQYQYVEMYCTPSYCPTPIYRGVPFFQANMYNRFDFYY
|
DWEVLVEVGRLAPSSIGLEPWKMLLLKNERMKEDLKPMAWGGLSSLEGASHFVIYLARKGVTYDSDYVKKVMHEVKKRDY
40 50 60 70 80 90 100
ataagtgtgcaatgcagacggtgaat cttgttcgtaaggtgctacaaaagaaatattaaattgttaaattggagacttt
agaaatcctgtatttactgggtaggt cgcacaatatctctacaattaatcgaagattccgatttaactcttcttaagta
cgacccagccctcgttggtgcttgcg tgaatcagtggttttttcttcatcaagaacgactaccattttatacttgaata
595734 595704 595677 595647 595617 595587 595557 595527
NWKNDFASVRINFVLNAMRGGFDRSL-PWSESYQVYMTVAFDPYNLINKIARKK*KFLTTS*FVLYNTISFVAIVKQ*F*
: : || : || | |: :||| |: | | |: :|
DTHSRFAQIIKNFQENDMKLTDERSLFDWA-SKQTYIQMANMMMAAAMLGIDSCPIEGYDQEKVEAYLKEKGYLDTAEFG
120 130 140 150 160 170 180
Helicobacter_pylori_813_main(1021079 - 1020954 of 1667867)
Query(96 - 137 of 217)
%Match = 4.0
%Identity = 26.2 %Similarity = 54.8
Matches = 11 Mismatches = 19 Conservative Sub.s = 12
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -1 [42, 0, 0]
aagtatcggtcaatacaagacagatgtttggctatgagagcggactactcagtctgatgtacagtggtagaataaagatg
gattactaatttataaggaaaaattgataatactaaactaaacaatagaagatactgtattaagtaatgaattggtaata
cattcgtgataggatagcgaacataatacggtcgtagttgactcacaccacagtttagtggaacttttctattaatgtaa
1021284 1021254 1021224 1021194 1021164 1021134 1021104 1021074
SKVFNSLEEFLMKLNQRSEKQNEILGYLYEVHSMYEKAIEQDANQFKRYQSELHSVRLDLMQKGFDDFSDKIFRRIENLE
::
KYDPNRRISEKDWEVLVEVGRLAPSSIGLEPWKMLLLKNERMKEDLKPMAWGGLSSLEGASHFVIYLARKGVTYDSDYVK
30 40 50 60 70 80 90
agttgcgctaagatgctaggagttaggagagtgcgagtatgatagcagggggggtaaccaagtccaggtactagactaaa
aatcaaagcagagtcgtaattattaagtaattagtgctcgaaaaaaaaaaaaaaggataggctagagacgggtgataaat
aatcgagacaagtagagtagtcgtaatttgtttcgctctgaacaaatctagcttaaaaaaagacagtaaggtgggtagat
1021044 1021014 1020984 1020954 1020924 1020894 1020864 1020834
KEFSEQERSKRESLARLNEVIDLFKEGIDKVFDRVSAFTWEKYKEQNDDEEDDD*RKLQRRALHRKGESRRCMGKL*KKI
| | :: :: :|: ::| |:| |: | | | |
KVMHEVKKRDYDTHSRFAQIIKNFQENDMKLTDERSLFDWASKQTYIQMANMMMAAAMLGIDSCPIEGYDQEKVEAYLKE
110 120 130 140 150 160 170
Helicobacter_pylori_813_main(566677 - 566603 of 1667867)
Query(109 - 133 of 217)
%Match = 4.0
%Identity = 32.0 %Similarity = 72.0
Matches = 8 Mismatches = 7 Conservative Sub.s = 10
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -2 [0, 25, 0]
taaaattacttgctgagttggtggtatgttacttagaatccgctaaagcattcaattaatatataataatagaataggaa
tatacttagttgtttactttgtaaataagtaaatttaagttctgttcctatcaagagttttaatctactagacactagca
tctattatgtagatgagttattaagaagagaattgtaagttttatgctgataccattataaactgtaacaaacactagcg
566933 566903 566873 566843 566813 566783 566753 566723
FNIKTFLNRFLGLFVKAFFVGFEE*I*E*LKQYFMVKKWLLAL*IMTALKFSHNRYCIILI*NFTI*TI*RETKSIEGTK
FATKKYDPNRRISEKDWEVLVEVGRLAPSSIGLEPWKMLLLKNERMKEDLKPMAWGGLSSLEGASHFVIYLARKGVTYDS
30 40 50 60 70 80 90
agaaaaacacttaaggtagaagacagatcgagctaaggaaaaagcaaaacgttacacaaaggtgagcaataagtcggaaa
gatgaatgattcttcacaaaaaattagtaaaattgcaaaaattaatactaattaatacaagctaattgaataaagcttag
ctgttcgaaccagttcaatgaaattgtgagcatacttaagacataaacgtttcaggtacgagatgtaatcgattcttcac
566693 566663 566633 566603 566573 566543 566513 566483
SDMSNNMRKLFSMIADSKDKKEKLIESLQENELLSTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKS
|: : ::|:::|||:: |||:
DYVKKVMHEVKKRDYDTHSRFAQIIKNFQENDMKLTDERSLFDWASKQTYIQMANMMMAAAMLGIDSCPIEGYDQEKVEA
110 120 130 140 150 160 170
Helicobacter_pylori_813_main(1059008 - 1058862 of 1667867)
Query(12 - 64 of 217)
%Match = 4.0
%Identity = 33.3 %Similarity = 56.2
Matches = 16 Mismatches = 19 Conservative Sub.s = 11
Gaps = 2 InDels = 30 Frame Shifts = 0
Primary Frame = -1 [46, 0, 0]
ttagaatctacgataaacagcatacagaatg cgaacccgtcaaacttgagatcttgcgtacagggtgagagct
atgcgaaatttagtacaaaaccaataaacaa ttgaataaaaacttttcaagttttaaataaaaaatagcaaaa
ttttaatacgagctatgatcctcgtttcttg agtgaaactaccgtaacagaattaaataaaaaagtaacaatt
1059012 1058982 1058952 1058943 1058913 1058883 1058853 1058823
YFSARKYQFMLESFKTKQNDPTYKLNDNTYE-------LVSKQLQDYQNTMLLLAKERLLFLEQDLKQKEEEFERAKEHY
: | ||: || :::: :| | : |||| ||: ::|||
MDREQIIALQHQRFATKKYDPNRRISEKDWEVLVEVGRLAPSSIGLEPWKMLLLKNERM---KEDLKPMAWGGLSSLEGA
10 20 30 40 50 60 70
gattactagatttcagacgtcacaact
taccaaagacctccaaaagttaataat
gataattaatagtaaaaactcaataat
1058793 1058763
VKSSKHYRETSLSPKEKQGFLKQIKQF
SHFVIYLARKGVTYDSDYVKKVMHEVK
90 100
Helicobacter_pylori_813_main(1 - 87 of 651)
Query(1 - 29 of 217)
%Match = 4.0
%Identity = 34.5 %Similarity = 62.1
Matches = 10 Mismatches = 11 Conservative Sub.s = 8
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = 1 [29, 0, 0]
agacacggagcgaggaaatggtcatagaagttgttaaaagttcatatttaagagttcggccaaagccag
tagttgacaaaagacgagaaaatacaaaaaggagttagcgggtgagggaagcgatcacaatcaggtcaa
ctgtgtacagtaaattaattgttatgtattatagttaataactaattcaaacagttacttcctaaaaag
30 60 90 120 150 180
IDRLMREAKEHEREASKRYDEYLKSKDKND*CEWFIKRTG*CLR*SCC*KRAREFSQADHLTNRGLPKE
:|| | :|:| |:|:|| : :|:
MDREQIIALQHQRFATKKYDPNRRISEKDWEVLVEVGRLAPSSIGLEPWKMLLLKNERMKEDLKPMAWG
10 20 30 40 50 60
Helicobacter_pylori_813_main(798609 - 798538 of 1667867)
Query(144 - 167 of 217)
%Match = 3.9
%Identity = 29.2 %Similarity = 70.8
Matches = 7 Mismatches = 7 Conservative Sub.s = 10
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -3 [0, 0, 24]
tctgtaacttggttttatgaaggtatacggttgagtacttagttactaacgctctgtttgtgattgtggtagtaacggcc
tctttttcttttctttttaggcttgtaagtaactgttttgtttttctgatgggttttagcgttttcttattgagatgcag
gttgtttcgggtttggttgccgtgcggagtttgagttctgcgttctcagcttggtgttggcttaggagttgattgtggaa
798868 798838 798808 798778 798748 798718 798688 798658
LPFVFIIPLLVVSFLLIFESSAVLSLKQGVYYAIGFILFWIVFFIPFRKLGRWLFVFYWACVILLALVDFMGYSKLGAQR
PWKMLLLKNERMKEDLKPMAWGGLSSLEGASHFVIYLARKGVTYDSDYVKKVMHEVKKRDYDTHSRFAQIIKNFQENDMK
60 70 80 90 100 110 120
tcgactataatccagcgaagactttgctaaaaccctagtgtgattacattattcggtataccgtgagcagcaagtgatta
gtttcttctctacgactatctttttcattataccctagaaggtttatgtatgtccctttaacatgccttttttgtgtttt
gactctctctagtcacgaccttagggtgcaccatttgcttgcgtagtttctcaggtataagttacgcttggcgttgtagc
798628 798598 798568 798538 798508 798478 798448 798418
WLVIPFISITLQPSEPVKIAILLLLAHLIKINPPPFKGYDWGMFLKLSFYICLPAALILKQPDLGTALIVLIMGFGILLI
:::| ::: | :: |: | :|||
LTDERSLFDWASKQTYIQMANMMMAAAMLGIDSCPIEGYDQEKVEAYLKEKGYLDTAEFGVSVMASFGYRNQEITPKTRW
140 150 160 170 180 190 200
Helicobacter_pylori_813_main(91030 - 90941 of 1667867)
Query(105 - 135 of 217)
%Match = 3.9
%Identity = 32.3 %Similarity = 61.3
Matches = 10 Mismatches = 11 Conservative Sub.s = 9
Gaps = 1 InDels = 3 Frame Shifts = 0
Primary Frame = -2 [0, 30, 0]
aagctagtaaactgtaagtcaggatgacaagaggggggtgtaaactgttagatggtggtgacaaagtgcagatggagaga
aatgtgcaacgaactaagtaaatttacaatctgtgaaagattaagaactaatttgtaataaaataatacatttgcagtag
aagtgcttgcgactgtacgatagttacgagtacgctaacgcgaaccattaactggaaatcgagtaaagttgtagttcacg
91268 91238 91208 91178 91148 91118 91088 91058
KKVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVGDEECEFMKKRYESFKEIFVGLEEFDKQKIKELEPNVILGANGIDR
TKKYDPNRRISEKDWEVLVEVGRLAPSSIGLEPWKMLLLKNERMKEDLKPMAWGGLSSLEGASHFVIYLARKGVTYDSDY
30 40 50 60 70 80 90
cgaaagcgtaagtaaaa tgatagatggggcatacaacgttatagaaagacagatggatggggggtgatgcgaggttgtc
aaattgagagaaggcta tcatgaattaactatacaaatttatataataagaacacttcaacaatacattttacgcactc
tactcgtgtagtgccgt tgggtacctaacaaagtccggtgtcagagtaaccctccataactaagttacggctcctctgt
91028 91001 90971 90941 90911 90881 90851 90821
HENIIGHGYRKDWSTMN-FAKLSENFVEEALKLKPNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALP
::|: | : ||:: :|| | :|| :|
VKKVMHEVKKRDYDTHSRFAQIIKNFQENDMKLTDERSLFDWASKQTYIQMANMMMAAAMLGIDSCPIEGYDQEKVEAYL
110 120 130 140 150 160 170
Helicobacter_pylori_813_main(1278460 - 1278392 of 1667867)
Query(21 - 43 of 217)
%Match = 3.8
%Identity = 39.1 %Similarity = 56.5
Matches = 9 Mismatches = 10 Conservative Sub.s = 4
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -2 [0, 23, 0]
gataggaagagcgcagagatcggaaagaacgtgaaaaccacaagagataaaggctcaatctgatggcgtagaatctgtta
tatgtaaagatacctgacgtcaaataaattattactagtacggcagaatgacctctctccctgtacaattataagaattt
gtcggtagctttctttggtttaaacaacgtggtagcccaactcgacgttaccttgccgctagtgcgaaggttagtggtac
1278491 1278461 1278431 1278401 1278371 1278341 1278311 1278281
VNFRVDKKGNVHAPIGKASFPEEKIKENMLELVKTINRLKPSSAKGKYIRNAALSLTMSPSVSLDAQELMDIK*R*EFLI
| :| | |:: : || |||
MDREQIIALQHQRFATKKYDPNRRISEKDWEVLVEVGRLAPSSIGLEPWKMLLLKNERMKEDLKPMAWGGLSSLEGASHF
10 20 30 40 50 60 70 80
tgt
tgg
aca
LG*
VIY
Helicobacter_pylori_813_main(1246997 - 1246881 of 1667867)
Query(89 - 126 of 217)
%Match = 3.8
%Identity = 28.2 %Similarity = 61.5
Matches = 11 Mismatches = 13 Conservative Sub.s = 13
Gaps = 2 InDels = 9 Frame Shifts = 0
Primary Frame = -1 [37, 0, 0]
atacagacagtgaaccaatctgataggacgggaaagaaggatgcggaacataggatagctggatgcgaagaaaatataat
gtagccagaaactacaaatttacttaaaggattgtgatcatacatgtcaatacggttatgatctaataacaaagtttcat
tcactttcactgagctaagttaactaagacactctaactttcttggctagcacttgggactttagacactacccgttgtt
1247208 1247178 1247148 1247118 1247088 1247058 1247028 1246998
SFKRTANRKDYAIKPHKKLLFETFIEEKRGEVISIGKIADIYAHVGITQKFKAGSLMELCDVTLEQVKNAKNNSLIFTNF
LQHQRFATKKYDPNRRISEKDWEVLVEVGRLAPSSIGLEPWKMLLLKNERMKEDLKPMAWGGLSSLEGASHFVIYLARKG
20 30 40 50 60 70 80
gctgagtgcacgaagtgagtgt tggctaggtgatagagtcactggcgtgcatagagcacgtacgtttcagtccgttgaa
tatagaagaggatggacactaa tacgtaattaatgaaattttgcaaggacgtagcaacgaatctttaaaataccttgag
gtttcttgtgcttcgttctagt ttgtaagtaatagactgcttccttgttcctacctcaaactttgcctataaactacgc
1246968 1246938 1246911 1246881 1246851 1246821 1246791 1246761
VHFDSDYGHRRDISGYANALEY-FDARLKEVLENLRENDLLILCADHGCDPSFKGTDHTREYIPVLFYHKDLQPAFLGKS
| :|||| : : :| :|: ::::|::|||:
VTYDSDY--VKKVMHEVKKRDYDTHSRFAQIIKNFQENDMKLTDERSLFDWASKQTYIQMANMMMAAAMLGIDSCPIEGY
100 110 120 130 140 150 160
Helicobacter_pylori_813_main(666883 - 666830 of 1667867)
Query(108 - 125 of 217)
%Match = 3.7
%Identity = 44.4 %Similarity = 61.1
Matches = 8 Mismatches = 7 Conservative Sub.s = 3
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -2 [0, 18, 0]
ggtagaatacagacagagataacaaacgaccaaaatcgagagctaagagcagcatgagtttagagcgactagcgattaaa
tccaacgctaaataacgattgaaacaaatcattcatacaaacgaaaagttttattaagaagtacatgtgtacaggttaat
ctaattccgtaactagcatacacaacagcaacagctaccaagccgtacggtaatacgcttgaacgtcgtaagtgtggaac
666920 666890 666860 666830 666800 666770 666740 666710
VASKDTSSMHKEIHKASEILSKHKTNQEIPQIITNFQANEKARYKNESVLIVQILDKGYYWIETELGMRLKAHGSLLKKI
: |: ||| ||| |:
RKGVTYDSDYVKKVMHEVKKRDYDTHSRFAQIIKNFQENDMKLTDERSLFDWASKQTYIQMANMMMAAAMLGIDSCPIEG
100 110 120 130 140 150 160
Helicobacter_pylori_813_main(699168 - 699242 of 1667867)
Query(193 - 217 of 217)
%Match = 3.7
%Identity = 28.0 %Similarity = 48.0
Matches = 7 Mismatches = 13 Conservative Sub.s = 5
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = 3 [0, 0, 25]
actgatgtaccatgcgcttttagcgcttctaactgttcgcaccccgcaaagccccatgtaaaattttaataattcttcgc
gttgatacatacacaggggactcacagtacgggactaacgttacaaatgaccgatgagagcaacgcacggagctcacttg
gttaatgactatttggcacgatagattttaaaaattgtttttggttaaaacgctactgtccgcacatatggtatttattt
699032 699062 699092 699122 699152 699182 699212 699242
RLFGKFESNLQTYAQGR*C*SIAQAHCFHSRRR*AF*HARILQPHDQIRKAPRHLSYGYSTKNSCSYTSWKSSFPYSLVR
|:|| : | ||: | ::
ASKQTYIQMANMMMAAAMLGIDSCPIEGYDQEKVEAYLKEKGYLDTAEFGVSVMASFGYRNQEITPKTRWKTEVIYEVIE
150 160 170 180 190 200 210
Helicobacter_pylori_813_main(1633262 - 1633092 of 1667867)
Query(6 - 69 of 217)
%Match = 3.7
%Identity = 30.5 %Similarity = 52.5
Matches = 18 Mismatches = 26 Conservative Sub.s = 13
Gaps = 2 InDels = 21 Frame Shifts = 0
Primary Frame = -1 [57, 0, 0]
aggtgcagggagaagaaagaaaaaacgatgcgctggggagc gatccagctaaaacaa ccgtggcgcgagggca
gcatgttttcaaaaagaaagaaactgaatattctaagatcc ttccaaacttcgctta cacagaataataaacg
gtgaggtcgcacaaacaaacacaagcaagttgtaagaacgg tttaaagtatactccg ctctcgacagaaagtc
1633248 1633218 1633188 1633158 1633137 1633107 1633089 1633059
RAELGLIVVAKDKKESKKESKNKTMREKLDLVPLEEGEIAP---VISPQKEPLITSTLIK----PHAYGEQVQEIEEEPS
:| : : :|| |: : || | :| | :|| : | | |: : :| | |:|
MDREQIIALQHQRFATKKYDPNRRISEKDWEVLVEVGRLAPSSIGLEPWKMLLLKNERMKEDLKPMAWGGLSSLEGASHF
10 20 30 40 50 60 70 80
gtgaaagcggaatgagtcagtgtctgtaa
aaaaaaaaactatgtctaagtaaaacaat
ttagtccgagccttctgcggaacacttct
1633029 1632999
DYEKNNDQEAINFGIALHKGLEYQYAYNI
VIYLARKGVTYDSDYVKKVMHEVKKRDYD
90 100
Helicobacter_pylori_813_main(658722 - 658690 of 1667867)
Query(170 - 180 of 217)
%Match = 3.6
%Identity = 63.6 %Similarity = 90.9
Matches = 7 Mismatches = 1 Conservative Sub.s = 3
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -3 [0, 0, 11]
ttggaggagtggaaaagcaaacagtctcatagagggtaagagttactcctgagtgttatacctactcaaatggatgtgag
ttcataataaaaacgaaggtaagtttccgttcataaataaagtcagctttaactatattaacaaaagcaaaaatagtaaa
gataaagaacaaaacagaacttctgcgcttgtagtacgagatttccgcctaaggatcgaacaacaagaaaagttgttgta
658789 658759 658729 658699 658669 658639 658609 658579
LLAEIEEIEYEEKTSKERRINHSVLLSPSFMAKVDEYMKEKGFSNRSLLFEKALEFYMLKHP*NQ*RTKK*EDI*GFENE
||: |:||||:
ASKQTYIQMANMMMAAAMLGIDSCPIEGYDQEKVEAYLKEKGYLDTAEFGVSVMASFGYRNQEITPKTRWKTEVIYEVIE
150 160 170 180 190 200 210
Helicobacter_pylori_813_main(705879 - 705733 of 1667867)
Query(84 - 132 of 217)
%Match = 3.6
%Identity = 28.6 %Similarity = 46.9
Matches = 14 Mismatches = 26 Conservative Sub.s = 9
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -3 [0, 0, 49]
atttcataagtttcctctcagtcttcccttacgaccgacaacgattatgaccattaaaaattttttggcgccgctcccag
atccaaaatggagtagtgttggttacttactccatctacacagggaaagttagtagagagtgtgggtgagttcgtatatc
ttcgaagtttatgtaggcatagttaatttaagagcgacacagcgtgtggtcacggcgcaatgtgtatatatacaagtaga
706063 706033 706003 705973 705943 705913 705883 705853
NFSSQK*NIG*YWLQWLCLIGWLF*PLLYSIPAKLPVNPNTQGRC*N*GILQSL*SKSKRFWFWC*VGHGLLARLQLQMA
||| :
RFATKKYDPNRRISEKDWEVLVEVGRLAPSSIGLEPWKMLLLKNERMKEDLKPMAWGGLSSLEGASHFVIYLARKGVTYD
30 40 50 60 70 80 90
ttgcctagcaaaacgggtgggtagaagttcacttgtagcctgaatacataaaagaggcggagctactacagttactaggt
cttttttcaagagattatgtgtaattattacattattaagttatagacatatttggtaccgagttcagtgcaaattgtta
atctttttctcatacttctgcttacttctatttgtgtggtgtatagacaaaatatttagtattcttagcacgaattccca
705823 705793 705763 705733 705703 705673 705643 705613
SFVLLFIAHNSKSQVVDFGVGFNEIIDFFQTHFLDLIEQRLVKI*RQT*IKIIVSGVQAARDRFIP*RLRA**KLFSVV*
| : : | | : | | :|| || : : | ::|
SDYVKKVMHEVKKRDYDTHSRFAQIIKNFQENDMKLTDERSLFDWASKQTYIQMANMMMAAAMLGIDSCPIEGYDQEKVE
110 120 130 140 150 160 170
Helicobacter_pylori_813_main(1415576 - 1415532 of 1667867)
Query(129 - 143 of 217)
%Match = 3.6
%Identity = 40.0 %Similarity = 66.7
Matches = 6 Mismatches = 5 Conservative Sub.s = 4
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -1 [15, 0, 0]
ctagcgaaaagaacaaagacctaggagaagttgtggagatgagcatcaagagaagacggaacactaagcacacagaaagc
tcacaataaaaattttcgaccaggcgaaagttagataccagtacatactataaatatcaatacttggtataaagggaaat
tactaacaatacctcccttcttcggcgtgcgtagagactccatcatacaataattatctacagtacctacagacccacta
1415622 1415592 1415562 1415532 1415502 1415472 1415442 1415412
LSNAQEIKKNENILIITGNPPYSGASENKGLFEWEVKATYGIDPKFQTIEIEKNVKLADKIQTLLSSVQIQKQSGSKNDL
:: : ||:| | ||
KKRDYDTHSRFAQIIKNFQENDMKLTDERSLFDWASKQTYIQMANMMMAAAMLGIDSCPIEGYDQEKVEAYLKEKGYLDT
120 130 140 150 160 170 180
Helicobacter_pylori_813_main(1580586 - 1580645 of 1667867)
Query(180 - 199 of 217)
%Match = 3.6
%Identity = 40.0 %Similarity = 60.0
Matches = 8 Mismatches = 8 Conservative Sub.s = 4
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = 3 [0, 0, 20]
ggggacgtggtacatacaggaaggtctcgtaaacgttgaaactagagatgccgtgatgtagctgtgagtagggatggtgg
acaacacttcttaaaacatttatctcaaatcttacgtacacaataccaaaacatcataaaaagctagcaaatgttgttgc
ttttgacactacaacgtaccttgtactatagcgaataatagtcttcctcacgtaggtacagaggttgctaaggtagtagt
1580489 1580519 1580549 1580579 1580609 1580639 1580669 1580699
DADDTQALVALIQKYKPKVVINVALPYQDLTIMQACLETKTHYIDTANYEHPDLAKFEYKEQWAFDRAYKEVGILGVLGA
|:||| : :| | |: |
ASKQTYIQMANMMMAAAMLGIDSCPIEGYDQEKVEAYLKEKGYLDTAEFGVSVMASFGYRNQEITPKTRWKTEVIYEVIE
150 160 170 180 190 200 210
Helicobacter_pylori_813_main(873510 - 873560 of 1667867)
Query(190 - 206 of 217)
%Match = 3.6
%Identity = 47.1 %Similarity = 58.8
Matches = 8 Mismatches = 7 Conservative Sub.s = 2
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = 3 [0, 0, 17]
gtactccattggtaggtttataaccaaaggtcttgaacctctagagaataacaaatttacaagaacaccgatcacaagac
cttaaaggttaagtcattcgtaatcagggtaaataaagattatgacaataagtagatctgaaatccaagcgtgtatttaa
tgcccaatttgaagttagctaacttcctcgtatttaccaactctggataaaccacttcccttacgcttcccaccaggcag
873383 873413 873443 873473 873503 873533 873563 873593
ALIHYQRSFFEE*MADLLSSLKNLPNSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIRNNEITPNHRASLRIQMMVKQ
: : | || |||| |
ASKQTYIQMANMMMAAAMLGIDSCPIEGYDQEKVEAYLKEKGYLDTAEFGVSVMASFGYRNQEITPKTRWKTEVIYEVIE
150 160 170 180 190 200 210
Helicobacter_pylori_813_main(1079529 - 1079473 of 1667867)
Query(5 - 23 of 217)
%Match = 3.5
%Identity = 42.1 %Similarity = 68.4
Matches = 8 Mismatches = 6 Conservative Sub.s = 5
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -3 [0, 0, 19]
gcataacgcatcagtactcgcaacacaactatgttccagcatccagatctattctaccaactg
ctaaatactacacgccacaacaatctacgcaagtactaaagtcagctgtagtaggggctacgc
cgaaatccaaaagacgtactataacaagcaaaattgagtaatcacgtgttccgatctaatgag
1079512 1079482 1079452 1079422 1079392 1079362
ALK*KIHALKSQTGSTHSHDPNKLTLKTRSK*GFYPLKDQRFPQSAIWLYSF*RCSRPINP*A
:| ||: | :| :|||:
MDREQIIALQHQRFATKKYDPNRRISEKDWEVLVEVGRLAPSSIGLEPWKMLLLKNERMKEDL
10 20 30 40 50 60
Helicobacter_pylori_813_main(172826 - 172761 of 1667867)
Query(114 - 135 of 217)
%Match = 3.5
%Identity = 31.8 %Similarity = 68.2
Matches = 7 Mismatches = 7 Conservative Sub.s = 8
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -1 [22, 0, 0]
aacgccacaaagaacatacaggcttactttatgctaacagctgcagccgtaatgaaagattaagtagaagaactagggag
ttaatgcctcagattgcttaaatcgagtccttaatatttaatcgtaatccaaaggaaaatttgattaataattttaaaaa
cgtagcctctgcgaactgcaaggtcactatatccgcggtgatcctggctcattgctaaatagctgacgtaagtattgtaa
173091 173061 173031 173001 172971 172941 172911 172881
IMHELRTPITKGKILSSMLKEELSCKRFSSIFDHLNMLIEQFARIEQLASKNYGSNKEKFLMSDLIDKIEKMLLIDEDKE
TKKYDPNRRISEKDWEVLVEVGRLAPSSIGLEPWKMLLLKNERMKEDLKPMAWGGLSSLEGASHFVIYLARKGVTYDSDY
30 40 50 60 70 80 90
acacgtttataagggtgtttagtaaaggagaataggacgttgtagaatggtaaaactaggtgattccttattacacgcgt
gctatcccaattacatattctctaattaactaagaaaatttattgaatttcaagactaaataaatacataccacgacagt
ctctactctcttagttagtcagaacgattgtacctcaggtgtcacttaggctacataaattagtgacctattcccacttt
172851 172821 172791 172761 172731 172701 172671 172641
SPIHVSSSNYIIEADFELFSIALKNMVDNAIKYSDDKQVFLDFIGNNLVVSNKSKPLKEDFEKYLQPYFKSSNPSQAHGF
|: :|| :| :| :|:: :|
VKKVMHEVKKRDYDTHSRFAQIIKNFQENDMKLTDERSLFDWASKQTYIQMANMMMAAAMLGIDSCPIEGYDQEKVEAYL
110 120 130 140 150 160 170
Helicobacter_pylori_813_main(214834 - 214781 of 1667867)
Query(110 - 127 of 217)
%Match = 3.5
%Identity = 44.4 %Similarity = 72.2
Matches = 8 Mismatches = 5 Conservative Sub.s = 5
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -2 [0, 18, 0]
ctagacttgaggttggaggcactctcggtacaagggacacatactcattaacctaacctttacattcaaatcactcagga
cggtacttgtaagttagacgagcacgcatttagtaaactagaacacatttaacttagttaggtttgaacacaggctttaa
ctgatcttattcagtactgaaacctcttgacactgaccgacaacgactgtgcttcactttatgaactaactacagctaaa
214871 214841 214811 214781 214751 214721 214691 214661
PCRVNPFFGIDD*LVESDARKRSHSRADLILKSVEENPMQS*KP*PNFLIKHPFIKRLFY*SLILCHKTNSQSRSLIVEK
:||| |:|: :|| |:
GVTYDSDYVKKVMHEVKKRDYDTHSRFAQIIKNFQENDMKLTDERSLFDWASKQTYIQMANMMMAAAMLGIDSCPIEGYD
100 110 120 130 140 150 160
Helicobacter_pylori_813_main(973817 - 973761 of 1667867)
Query(125 - 143 of 217)
%Match = 3.5
%Identity = 36.8 %Similarity = 73.7
Matches = 7 Mismatches = 5 Conservative Sub.s = 7
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -1 [19, 0, 0]
taatgacactgtgagagtacgggagaggagttgatataatactagaagaaataataagcgtacgaattaactttgagtca
agcccatcagcaaaatccatcatttgaaggttagcgcattgtaaaaatgtgaagataatataacttcgaagccgtggtta
tccaccccactttaactctcttgtgctagtgtactctaacgctataagaaaaaaaaagttttagactaaggttgtggttg
973851 973821 973791 973761 973731 973701 973671 973641
YSTSANLTQCAYDKEIASNLADVIVSDERGLFESSSSKIFRLYKDKKVRIR*KR*IKELDFNQAIIS*KKRSSWVRGFLK
|: ::||| ||: :| : :
KKRDYDTHSRFAQIIKNFQENDMKLTDERSLFDWASKQTYIQMANMMMAAAMLGIDSCPIEGYDQEKVEAYLKEKGYLDT
120 130 140 150 160 170 180
Helicobacter_pylori_813_main(429920 - 429822 of 1667867)
Query(161 - 193 of 217)
%Match = 3.5
%Identity = 33.3 %Similarity = 48.5
Matches = 11 Mismatches = 17 Conservative Sub.s = 5
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -1 [33, 0, 0]
ctttaagaggtaaggattcctattttggaaagtggatatcggttcttaggaagaagtgtctcaggatcactgaatgatca
ctataataattagggttttacttggtagacacgtaaattcggatcctgattgttgagatatttcagtgtaacactatgga
cttcaataagagacggtgccctacttacgtcaggtacttatttgctaaaggcggcaccccgcgtacacctctgtactgac
429960 429930 429900 429870 429840 429810 429780 429750
PFYFKKVKEVLKRGGMFLLHSILCCFEGKTNAWVDKYIFPGGYLPSLREVMSVMSECDFHLLMAESLRIHYAKTLDIWRN
| || |: |: ||| : :|||:
ASKQTYIQMANMMMAAAMLGIDSCPIEGYDQEKVEAYLKEKGYLDTAEFGVSVMASFGYRNQEITPKTRWKTEVIYEVIE
150 160 170 180 190 200 210
Helicobacter_pylori_813_main(1330985 - 1331059 of 1667867)
Query(80 - 104 of 217)
%Match = 3.5
%Identity = 40.0 %Similarity = 52.0
Matches = 10 Mismatches = 12 Conservative Sub.s = 3
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = 2 [0, 25, 0]
taatagattattgtagtgtaaagctgtcagtggtaggggttcaataagtggtagaagtttggagcgatagataattgctt
atgcgtttcatactaactttcgcttgtatttctttttttttaagcgtgtgcagggaacttgcagccgttcatctttgttt
gaaacgtttatgatgaagtgactgacaattagagtgggtggaattcccagttcgttgtatctagtactggaacgtaggat
1330777 1330807 1330837 1330867 1330897 1330927 1330957 1330987
*IRSSVIFSKF*AFKESVFMTSALLGLQIVLAVLIVVVVLLQKSSSIGLGAYSGSNESLFGAKGPASFMAKLTMFLGLLF
|
MDREQIIALQHQRFATKKYDPNRRISEKDWEVLVEVGRLAPSSIGLEPWKMLLLKNERMKEDLKPMAWGGLSSLEGASHF
10 20 30 40 50 60 70 80
gaaaagtgtttaagtgaagtggaaaaagctccgcgagacacgcacatacacactgcgcaactac
ttactctgataaaaagagttaacacaaatccttcccgctacctacctacctactaacccacttc
ccccctgcttccaaccgctatgtaccaatgcactcccgtctattcaacagcctagacatttaga
1331017 1331047 1331077 1331107 1331137 1331167
VINTIALGYFYNKEYGKSVLDETKTNKELSPLVPATGTLNPALNPTLNPTLNPLEQAPTNPLMP
|| | |: :| | |: | |
VIYLARKGVTYDSDYVKKVMHEVKKRDYDTHSRFAQIIKNFQENDMKLTDERSLFDWASKQTYI
90 100 110 120 130 140
Helicobacter_pylori_813_main(1156442 - 1156374 of 1667867)
Query(98 - 120 of 217)
%Match = 3.5
%Identity = 21.7 %Similarity = 65.2
Matches = 5 Mismatches = 8 Conservative Sub.s = 10
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -1 [23, 0, 0]
agtgggttataatatcttagtcttttctcttaagattaaagttaaagttttttctaggcggttttaataagtattatgag
tctctgatacgttttttctattcttcagcgcctcagttgtgtcctcctctcaaaaccgttatcttgacaccctcattcac
ctagtgacgttgttgagatatattacacttttgtaagtcgcactggggttgaaacttgtttcagatatccttagacttcc
1156704 1156674 1156644 1156614 1156584 1156554 1156524 1156494
IALAVG*FKSSMFILLLSIEFLSFLSQCPCSTMAK*LISMGLSTMTALSFS**QYTAGLVDFSLLSKSNTASIS*IFANA
MDREQIIALQHQRFATKKYDPNRRISEKDWEVLVEVGRLAPSSIGLEPWKMLLLKNERMKEDLKPMAWGGLSSLEGASHF
10 20 30 40 50 60 70 80
cattttttgtacgcaagaaatgtaaaatctcagtaagtaagtctccatggggaattcgtgagcttagctttagttaatag
aactctcactaatctaaatatataaagtgcaccacattaaatttacgttacagattactgtctcaagggacggacaattg
tcagttgaataagaagtacagcaacattcaccctactagtcgcacttagaaaaataattagtatatacaaatgaaacgtg
1156464 1156434 1156404 1156374 1156344 1156314 1156284 1156254
HNSLSFS*AFKQVPIKDKIKLDLKNKSFRSHTAYTNVLKNDLLLHPSLVEAERKFLQAFGMALS*NGR**SSG*SKNLIG
|: ::| : : :|: : ::||
VIYLARKGVTYDSDYVKKVMHEVKKRDYDTHSRFAQIIKNFQENDMKLTDERSLFDWASKQTYIQMANMMMAAAMLGIDS
90 100 110 120 130 140 150 160
Helicobacter_pylori_813_main(824620 - 824270 of 1667867)
Query(94 - 159 of 217)
%Match = 3.5
%Identity = 29.9 %Similarity = 55.2
Matches = 20 Mismatches = 26 Conservative Sub.s = 17
Gaps = 4 InDels = 171 Frame Shifts = 0
Primary Frame = -2 [0, 63, 0]
acactctagaaaaagacaagacaagggagaaacgtaggaagataaaacaacaaagtgggcggagtggaagatgtgagagt
aacacctaaggcaaatcaaatcaaacaaagaaatttcaaaacttacagaaaaatttacgaggaaggctgcattgaaattt
acgtcagcagctaaattaaattaaagatgcgcactaaaatttccacacaacagctactgtggatcgggcgtggtaactta
824831 824801 824771 824741 824711 824681 824651 824621
KHTHSPLNERSTKKEIPKKEIPKKEAENESKNQVFIAEKNDTFIKTKRKKHKKIVLDAGHGGKDCGAMSANLVCEKDIVL
FATKKYDPNRRISEKDWEVLVEVGRLAPSSIGLEPWKMLLLKNERMKEDLKPMAWGGLSSLEGASHFVIYLARKGVTYDS
30 40 50 60 70 80 90
gggattcagcaaagtagttaagagatagtggcagtgaaaaggttatgcgatacactatagcgagattttaga agagaag
attattaaataagaagtttcgaaatatattcgcatcaaagcatttctacactcaacccacagtacattcccg gagcgat
agggtacagtaaattctagagtgtttttagtcgaactaacgtaccagtctcccatcttctttagtttaccag cagtgag
824591 824561 824531 824501 824471 824441 824411 824384
EVVKFLHKELKKRDYSVLLTRDKDIYIDLVARTELANKKSADLFISVHANSIPKHSTSNAHGIETYFLSTAR-SERARKV
: || : |:||||| : :| :: :
DYVKKVMHEVKKRDYD----------------------------------------------------THSRFAQIIKNF
110 120
ggcgaa gggatagtttaatttattaacctagtaatgaggctgacc
caaaaa aatattaatcagtttactacagtttcaatctataagtta
tgaata ctgtagttttatgtatagcggagcctcaagttgaccgca
824360 824330 824300 824270
AEQENK--DDVNLMDYFSKSLFLNSLNTQRLIVSNKLAIDVQYGMLQ
| : | |: :| |: || :: | :: : | ||
QENDMKLTDERSLFDWASKQTYIQMANM--MMAAAMLGIDSCPIEGYDQEKVEAYLKEKGYLDTAEFGVSVMASFGYRNQ
140 150 160 170 180 190
Helicobacter_pylori_813_main(1565887 - 1565864 of 1667867)
Query(63 - 70 of 217)
%Match = 3.4
%Identity = 75.0 %Similarity = 87.5
Matches = 6 Mismatches = 1 Conservative Sub.s = 1
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -2 [0, 8, 0]
gtttttccttggatctatgcaatcaatgcctgcactgtggctttcctgattgcttcggattcctaggttccattaacatt
aggtttgcgtggtgggttcgttgtttcctcactactcgcggtgctgtcagtagcttggagttgtgctctgtattttgctc
ttcatgggaggtagaaaggaggtaaggcgggtagaaagggataggatgacggaaggggggtaaagcagtcgtaaggcata
1565954 1565924 1565894 1565864 1565834 1565804 1565774 1565744
DCCLFLRP*LGGIWR*ILARMMCLIMSALP*ALKPLAWAGRF*SLRFAKCLERSLLGGKWFLRLRAVSFRLNLLMMRTFS
|||:|| |
EVLVEVGRLAPSSIGLEPWKMLLLKNERMKEDLKPMAWGGLSSLEGASHFVIYLARKGVTYDSDYVKKVMHEVKKRDYDT
40 50 60 70 80 90 100 110
Helicobacter_pylori_813_main(757872 - 757684 of 1667867)
Query(144 - 206 of 217)
%Match = 3.4
%Identity = 20.6 %Similarity = 39.7
Matches = 13 Mismatches = 38 Conservative Sub.s = 12
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -3 [0, 0, 63]
acgaaacatagggaggtgctgagattgcgcagaaccaacgataggaggaaattggcaggaatgtagactatagaggctga
aacaacagtagtattgtaataattataacctgaccggacccacgttaatgtttcaaaacattgagcggtgtataggggaa
cttaatacgtgggtagggtgtagttataccacacaacctctcgaggtacgtatcgaaatatacttgcttctttaaggcga
758101 758071 758041 758011 757981 757951 757921 757891
NHAKKTQSLNGVEIVGLEHLDKVIYLDQAPIGKTPRSNPATYTGVMDEIRILFAEQKEAKILGYSASRFSFNVKGGRCEK
RMKEDLKPMAWGGLSSLEGASHFVIYLARKGVTYDSDYVKKVMHEVKKRDYDTHSRFAQIIKNFQENDMKLTDERSLFDW
70 80 90 100 110 120 130
tcggggaaagacttcggtgctgataggataccatgaagagatagggtaaaggggtgttgatcaaggataacagggtgtaa
gagagatatatattcatttagaggagcaaacactatatagactcattatgtaacaattcatcatctatacttatgtgatc
cactgctaaagctgttgacactctgctacccataacggacactctggcgcgagttatttactaccggaagtgtgcactct
757861 757831 757801 757771 757741 757711 757681 757651
CQGDGDIKIEMHFLPDVLVQCDSCKGAKYNPQTLEIKVKGKSIADVLNMSVEEAYEFFAKFPKIAVKLKTLMDVGLGYIT
|:: : :: ||| |: : :| :| | | | | : :| | :
ASKQTYIQMANMMMAAAMLGIDSCPIEGYDQEKVEAYLKEKGYLDTAEFGVSVMASFGYRNQEITPKTRWKTEVIYEVIE
150 160 170 180 190 200 210
Helicobacter_pylori_813_main(572346 - 572302 of 1667867)
Query(195 - 209 of 217)
%Match = 3.4
%Identity = 40.0 %Similarity = 80.0
Matches = 6 Mismatches = 3 Conservative Sub.s = 6
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -3 [0, 0, 15]
atgcatcctgcttagcagttagtagtcggttcgcatttgttagacgctgctggatatttaaaatacacataatatctaaa
aggtgtacgttgaagttcttttctcgaggttataccgtccgagtacgttagggttagcgaaaatccaaacacgacgcaat
taaccgaaagataggaggaaggagaaggttggtgatcggaggttagcagtggagaaaggacaaaacagacaacagccaaa
572488 572458 572428 572398 572368 572338 572308 572278
N*GLSLQP*VLC*KGLMALLMVSMA*QGGFLQVQTSCLASWKGIQARLVHWGGMLK*SWKNKKLTPKQKSKTCKSRSKKI
::|:::||| : ||
ASKQTYIQMANMMMAAAMLGIDSCPIEGYDQEKVEAYLKEKGYLDTAEFGVSVMASFGYRNQEITPKTRWKTEVIYEVIE
150 160 170 180 190 200 210
Helicobacter_pylori_813_main(1192249 - 1192082 of 1667867)
Query(81 - 130 of 217)
%Match = 3.4
%Identity = 28.8 %Similarity = 48.1
Matches = 15 Mismatches = 25 Conservative Sub.s = 10
Gaps = 2 InDels = 18 Frame Shifts = 0
Primary Frame = -2 [0, 50, 0]
ctagccctaaacaacgatagtccatactgcatgagaaaatgtcacacgggggagtcgttgcatcattagtaggttcagtg
gtaaaagtgaaaaaaattagtaaataatcaatagtaaactatatcaaagtaaacaaagacataattaaggagttaaacct
taaagacaaacaatagggatgaatgtacgaaaactacgtatgactaatgttaactaggttactgtatatgagttccgtag
1192412 1192382 1192352 1192322 1192292 1192262 1192232 1192202
RLKEQQRLRKNQKNQEMLKGLQQNLNQFAQKLESVKNKTLDLQIPKQDGVDEKAYQEWYAQIYQILYKGWKGVFYHKASV
::| ||| | |
KKYDPNRRISEKDWEVLVEVGRLAPSSIGLEPWKMLLLKNERMKEDLKPMAWGGLSSLEGASHFVIYLARKGVTYDSDYV
30 40 50 60 70 80 90
agcaaagagggtgtaacattgtagtaaagaactagtaaggtcctcggaaatacgataaaggctgatgttttactgttcca
gcttttcaagataacttgacataaaaagttcttaataatatccacgggttctatatccaaaaggtagttaactagttaat
tagtgctatagtttcttcctttgttcgtggctattagagttcattaacgtttattcctgaaaatttcttacaagctgaga
1192172 1192142 1192112 1192082 1192052 1192022 1191992 1191962
SALIMIAKDGEFDYTILSYSDFKDYNKSVMTLLNDLKKVDFPPYPGGSMISIQVNFTTKEEQ*GIYGFF*YTL*GFLQQI
:: | ::| ::| | |: ||:| |
KKVMHEVKKRDYD----THSRFAQIIKNFQE--NDMKLTDERSLFDWASKQTYIQMANMMMAAAMLGIDSCPIEGYDQEK
110 120 130 140 150 160 170
Helicobacter_pylori_813_main(108715 - 108659 of 1667867)
Query(92 - 110 of 217)
%Match = 3.4
%Identity = 36.8 %Similarity = 73.7
Matches = 7 Mismatches = 5 Conservative Sub.s = 7
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -2 [0, 19, 0]
agaactaggaagttaaggttaggtgggaggcgtgaaatgagtggcgtgacgttgaggcttgaggtacaatctgggcgcca
agtagcggattcttagaataaaatttaattaatagaagagtacattttacagtaattgaaatgatacacttagttccacc
gcagtttgttctagtctttcatgtgaaaggtgtagatctcgtgtggtcatttaaaggcttgcggtctacgttcagagccg
108749 108719 108689 108659 108629 108599 108569 108539
KGIKRSSGDIIALLNSDDFYKDEFVVEKVVHEFERKNCDSVYADLVFVKPDCLEKVVRYYEIGEFNPKTLLYGVVPAHPT
| |:||:|| :::: |:
LSSLEGASHFVIYLARKGVTYDSDYVKKVMHEVKKRDYDTHSRFAQIIKNFQENDMKLTDERSLFDWASKQTYIQMANMM
80 90 100 110 120 130 140 150
Helicobacter_pylori_813_main(550798 - 550742 of 1667867)
Query(179 - 197 of 217)
%Match = 3.3
%Identity = 42.1 %Similarity = 57.9
Matches = 8 Mismatches = 8 Conservative Sub.s = 3
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -2 [0, 19, 0]
aggcatgcttagaataataccacgcctaaattacaggtattgttgatgagggaaggtaaccgtgtcaagccgagcccgtg
ttgcttatttatttagatttctaacagagggttttaatctggatacttactgttcaaatgcctttagacataaacctgag
ttagaaggtctggttctgtgacttagcaatcggcgcactatctagcttagagtgaaccgccttgtatggaagtccatttt
550892 550862 550832 550802 550772 550742 550712 550682
IVGPILELFFNVMIYSNLILPIHDPQCKRSCLMLMDEFTLCGYLETFVKAVGIMAEYNMRPAFVFQSKAQLENDPPLGYG
|||:| | :|| : |
ASKQTYIQMANMMMAAAMLGIDSCPIEGYDQEKVEAYLKEKGYLDTAEFGVSVMASFGYRNQEITPKTRWKTEVIYEVIE
150 160 170 180 190 200 210
Helicobacter_pylori_813_main(1200891 - 1200811 of 1667867)
Query(10 - 36 of 217)
%Match = 3.3
%Identity = 29.6 %Similarity = 59.3
Matches = 8 Mismatches = 11 Conservative Sub.s = 8
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -3 [0, 0, 27]
ggaacgctgcacattacagtctactgaagtagagcgttcaattatataagttgctacgaagagtcttgccgcttta
ccaaaacacaaagttcaacgcccataaggtggttattgtgttagtgaggtaaacaagacggtcatgacatctgaat
taagcacatatggttcctatcatatcagttcattaatacattgacccgaatttcagtatcaccgtgactttaatac
1200889 1200859 1200829 1200799 1200769 1200739 1200709
AAKKHEP*AQNQRFFTHNACPSTQFDKRGFSGIVQVF*LRIF*RFSYRRVYYDP*KRETSGIA*LW*AHLAL*Y*I
|:||| | |: : :: : :|:|
MDREQIIALQHQRFATKKYDPNRRISEKDWEVLVEVGRLAPSSIGLEPWKMLLLKNERMKEDLKPMAWGGLSSLEG
10 20 30 40 50 60 70
Helicobacter_pylori_813_main(787097 - 787038 of 1667867)
Query(123 - 142 of 217)
%Match = 3.3
%Identity = 40.0 %Similarity = 60.0
Matches = 8 Mismatches = 8 Conservative Sub.s = 4
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -1 [20, 0, 0]
gggaaagccgtagggaatgagagagcggacgctgtagaaagagaagctagaaaataaggccattgcactacaagacaggt
aagtataaaacgactataataaatattaccgttgtaaatcaggatagaaatcaaatgacatttactaccactaagaaaat
tgcggactaaactatactcactagggtccgaacgtaaaactccaaactattgaatccaccctacgccgacccacctgctg
787128 787098 787068 787038 787008 786978 786948 786918
DEGMKIDHQESSDAVKIYDIDNEMELVDTPGLFGFKEKITDSGKIERYKDITKKYISEAHLILYALNPSNPIKDSHKDDL
:|:|:| | || : | |
VKKRDYDTHSRFAQIIKNFQENDMKLTDERSLFDWASKQTYIQMANMMMAAAMLGIDSCPIEGYDQEKVEAYLKEKGYLD
120 130 140 150 160 170 180
Helicobacter_pylori_813_main(1289086 - 1288982 of 1667867)
Query(72 - 106 of 217)
%Match = 3.2
%Identity = 22.9 %Similarity = 48.6
Matches = 8 Mismatches = 18 Conservative Sub.s = 9
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -2 [0, 35, 0]
atagagtggttgctgagggatgtgggggagagaggcgcgatagaagtggggggagtaaggatggaagacagaaaagaacg
gctcgtgcgctctacggtataattcgtctgttgagaaacttgatggtaacagatatatcgatagtcctatacatggtata
caggcgcactacttactgatctactggtgcggcagatcttacttccaacaactgttgttgtaactgcgagtcagctcgaa
1289270 1289240 1289210 1289180 1289150 1289120 1289090 1289060
SSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIKLE
: : |
MDREQIIALQHQRFATKKYDPNRRISEKDWEVLVEVGRLAPSSIGLEPWKMLLLKNERMKEDLKPMAWGGLSSLEGASHF
10 20 30 40 50 60 70 80
attcgtccgaggcacataaacggagaagaattctcaagataggcgaaggaagcggcgaagaggatg
ttaacttacaacgaattattaacaaatttatcatcccattatccaattattgagggttaattaata
tacacacacaaagattaacgtagaagtgcttctgcaggtttcactataatctaggtgtagaaagta
1289030 1289000 1288970 1288940 1288910 1288880
ILYQALLQAKEARKHILKIMHEAKEKIVINFSHLPTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFE
::| | :: |:||| |::
VIYLARKGVTYDSDYVKKVMHEVKKRDYDTHSRFAQIIKNFQENDMKLTDERSLFDWASKQTYIQM
90 100 110 120 130 140
Helicobacter_pylori_813_main(110350 - 110279 of 1667867)
Query(164 - 187 of 217)
%Match = 3.2
%Identity = 33.3 %Similarity = 54.2
Matches = 8 Mismatches = 11 Conservative Sub.s = 5
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -2 [0, 24, 0]
gaataggggaagggttgcgacaaggctgcggcaggggttgagttgggaagggtattaacatggggcgaatgttctgggtc
gttattttaaagttttactacactgacgtacagtagtaatggataccaagggacaaatcaaaggtcaaatcacaaaatca
cgttggggtacggagttgcttacacaagtctgcttggtttggtgggcaagacctttagtactacaggaacccgtttatta
110399 110369 110339 110309 110279 110249 110219 110189
GMIYMVVVDKNGVVLFDPVNPKTVGQSGLDAQSVDGVYYVRGYLEAAKKGGGYTYYKMPKYDGGVPEKKFAYSHYDEVSQ
| | : |: :|||: |: |
ASKQTYIQMANMMMAAAMLGIDSCPIEGYDQEKVEAYLKEKGYLDTAEFGVSVMASFGYRNQEITPKTRWKTEVIYEVIE
150 160 170 180 190 200 210
Helicobacter_pylori_813_main(942919 - 942830 of 1667867)
Query(159 - 191 of 217)
%Match = 3.2
%Identity = 32.3 %Similarity = 58.1
Matches = 10 Mismatches = 12 Conservative Sub.s = 8
Gaps = 1 InDels = 9 Frame Shifts = 0
Primary Frame = -2 [0, 30, 0]
tactccttagactgactaagtccggtgtatgggagtggaacttattcacatgatatagcaaaaaaatgcagtgaaactat
aaaactgtcggagaagtggcttttcttaaaggttttataatctaacaatttaatgtgtcaagtcgttccagcgaccttag
actccaatctgtccgttgcctttgtttgcggtggtaatacgctattaactgtagttcgaacctcctagttcctacgtaac
943184 943154 943124 943094 943064 943034 943004 942974
*NHYPL*FTGRHCDKRFRSAFLLVAFV*N*GGVMVLEVKNLSFKYSQKLILDKLSFSVPKNSITSILAPNGSGKTTLLKC
EDLKPMAWGGLSSLEGASHFVIYLARKGVTYDSDYVKKVMHEVKKRDYDTHSRFAQIIKNFQENDMKLTDERSLFDWASK
70 80 90 100 110 120 130 140
ctgctactggagaagtaagatctactgagacagtaccggtt gtatagcgtgtagagactattgacagacaaggaagt
ttgttactaacatacgaaattctacaaacattcatcataaa ctatgttattttgaccatattctcacaataaccgtt
tagtagtaaacatagtcattacagttaacaacttccagatt gctccgattcaggaggtgtgctgtatgctaagtcta
942944 942914 942884 942854 942833 942803 942773 942743
LLGLLKPLEETEIKACNKDILPLKPYEKAKLIAYIPQVEYY---AFNFSVLDFVLMGKATHLNLFAMPKAKHIKEATSVL
| |:: |:: |: ||: : | | ||:
QTYIQMANMMMAAAMLGIDSCPIEGYDQEKVEAYLKEKGYLDTAEFGVSVMASFGYRNQEITPKTRWKTEVIYEVIE
150 160 170 180 190 200 210
Helicobacter_pylori_813_main(529857 - 529831 of 1667867)
Query(111 - 119 of 217)
%Match = 3.0
%Identity = 66.7 %Similarity = 77.8
Matches = 6 Mismatches = 2 Conservative Sub.s = 1
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -3 [0, 0, 9]
cttagcgacagtagtttatatgtgcgggttacgctccaaagccgtccagcgactctagatctttaccaacattggtaacc
tattcacagaagtgttattatataaccttttaggtcattgtatcacttctatgcttgtttattaagaattttaatattta
ccccctagaacccttcaccttgttatgtctgtttcaactgttccgctaggttccttcgtccccaacatcttcaacatact
529921 529891 529861 529831 529801 529771 529741 529711
LYFIAHAKRKDCIGFF*IFNFEFDQAAVFFMHGRFPQIIRVHLA*PLIALDIRSLFSVIFHFF*KRQNILIF*EV*IILH
| || |||:
FVIYLARKGVTYDSDYVKKVMHEVKKRDYDTHSRFAQIIKNFQENDMKLTDERSLFDWASKQTYIQMANMMMAAAMLGID
90 100 110 120 130 140 150
Helicobacter_pylori_813_main(184288 - 184217 of 1667867)
Query(185 - 208 of 217)
%Match = 2.5
%Identity = 29.2 %Similarity = 37.5
Matches = 7 Mismatches = 15 Conservative Sub.s = 2
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -2 [0, 24, 0]
gtactccaatcaccaacttggactaatattaactttataagtgttttctaaagacttaatacatcactacacaagtaact
ctacacctaccacagtttaattgtttcttatattgtttaactaatagactaatactatttaagtatataagcagggatca
gttcatacactccaagttagtccgtaacttcttatacaatctatttgcagaactataattccatcgctaacaagcacctt
184547 184517 184487 184457 184427 184397 184367 184337
AFNP*PPIKSPNPQRMLF*EVIRLIISIFYINLLCLILKNAFEYFYWHSMKKVNPF*IIFNHRFHMHFKQSPKRG*NIPY
VTYDSDYVKKVMHEVKKRDYDTHSRFAQIIKNFQENDMKLTDERSLFDWASKQTYIQMANMMMAAAMLGIDSCPIEGYDQ
100 110 120 130 140 150 160
gaaggtaagataaatcctattatttgtgtataatctaatagataagcgtagggttcgcggtctatgggtaatagaatgat
aaactcaacactagacatctcgacctcttctttcccacgagcgcccctcatcgtttctatcctatgctccttacccggcc
taatgtacttaaaagtccctaactttcagtagcactaagactcgcagttactttgcataagcaaagtttactacatccac
184307 184277 184247 184217 184187 184157 184127 184097
DKKAVSKNANSIKR*PHFTFSRYSSVSVLTLMISPSKTWKGTCTTAPVSKVAGFLLALEVSPLKLGAVSTIFKATTCGTS
| | :| |:| ||
EKVEAYLKEKGYLDTAEFGVSVMASFGYRNQEITPKTRWKTEVIYEVIE
180 190 200 210
Helicobacter_pylori_813_main(395918 - 395814 of 1667867)
Query(156 - 190 of 217)
%Match = 2.5
%Identity = 33.3 %Similarity = 55.6
Matches = 12 Mismatches = 14 Conservative Sub.s = 8
Gaps = 2 InDels = 6 Frame Shifts = 0
Primary Frame = -1 [34, 0, 0]
tgcatgctcgtatcttctctccagatcagtgactacttgtgtattgtgcttcaccacactagcagtacaagtcaaagcta
tctatggtacaacgtcgacagagcgttattctttagttctgttaaaacatttcctagttaagaagtataaaatgatagaa
ttagtgagtatatgtcccgtcaaacggtttattagtgtgtcaataagtattacaatcttaggaacaaggatggtttgaaa
396180 396150 396120 396090 396060 396030 396000 395970
FALKFGRLHAYKSRFSRYPYRQRASLLNVFAILLKRLFAFGLIY*E*AQFFLTPLNRIL*KGQKGLKLKKD*LSNIER*K
MKEDLKPMAWGGLSSLEGASHFVIYLARKGVTYDSDYVKKVMHEVKKRDYDTHSRFAQIIKNFQENDMKLTDERSLFDWA
70 80 90 100 110 120 130
tcgctgaggaaagttcgcgacaagtacccgcccagttttagttc acctgggctaaataggttttagctagaattgttta
agcctaggtaaagtttctgtaagttattagggtactactagagt ctttgtctaaagtaggtattaagtgagcggattaa
gatatagaaatggttatactaggtgattaaacaagttcagataa gcttttttgatgagggtttaggaattaaaattcag
395940 395910 395880 395850 395823 395793 395763 395733
*RAPFERGVKNKGFFLALGIQKRVLKLLQGRRLKAFYSLKGY*L-TLLFGVAL*KNRLKGGFYFLKERLSDRT**DFF*K
||| :: :::|: ||| | | |||::
SKQTYIQMANMMMAAAMLGIDSCPIEGYDQEKVEAYLKEKGY-LDTAEFGVSVMASFGYRNQEITPKTRWKTEVIYEVIE
150 160 170 180 190 200 210
Helicobacter_pylori_813_main(1074664 - 1074554 of 1667867)
Query(147 - 186 of 217)
%Match = 2.2
%Identity = 25.6 %Similarity = 48.7
Matches = 10 Mismatches = 18 Conservative Sub.s = 9
Gaps = 2 InDels = 9 Frame Shifts = 0
Primary Frame = -2 [0, 37, 0]
agcagtaatccatccattactctgaaccctgtagtgtctccgccttgtcccaacacactactgtacttcacccacagtga
gaggcacttctaccgaaacccatcgcttagcgacgttacctctaggagttcagacaactccacgagtaaagatttagaga
ggactagcacaagctttacagttagtttatcaacgcttcatgttgagcgtatcacagaagcaaggtttacggacagtgat
1074875 1074845 1074815 1074785 1074755 1074725 1074695 1074665
RERSA*TILPLKSPRNY*TPSHFARTLLQCA*KAWVFHSPLALHW*ECLLPNSQTQKPLTP*AWKRFYQNRQLILKG*GN
AWGGLSSLEGASHFVIYLARKGVTYDSDYVKKVMHEVKKRDYDTHSRFAQIIKNFQENDMKLTDERSLFDWASKQTYIQM
80 90 100 110 120 130 140
gacatctcgtgtga cag actataaagaaagttattactcgcccccgtagattcaaagtattttaataaacaattgcg
cgtatatactgtaa cta aacagcagctaacttacgattacgtagcgaaatttttaactactctttgctctagtagtt
acaatttatgtttc ctg taatcaaggggaacaatcatttgttgtacaatttaagtaatacattgtagactagtagtt
1074635 1074584 1074554 1074524 1074494 1074464 1074434
ASLKFHFQALGFDN-PIE--NQSNCTKRAMKKAFLKSCKLFHARLQRPG*KDIFLLMNKAFKSLSFMI*TITLKRF*GLV
|:: || |: ||| :| :| :| : ::
ANMMMAAAMLGIDSCPIEGYDQEKVEAYLKEKGYLDTAEFGVSVMASFGYRNQEITPKTRWKTEVIYEVIE
160 170 180 190 200 210
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