Haemophilus influenzae Genome
Sequence Search
Query = Query
Database Name %Match %Id %Sim
Haemophilus_influenzae_6824_main 47.2 49.7 71.6
Haemophilus_influenzae_6824_main 2.8 45.2 64.5
Haemophilus_influenzae_6824_main 2.8 31.6 51.9
Haemophilus_influenzae_6824_main 2.8 27.0 46.0
Haemophilus_influenzae_6824_main 2.7 45.8 66.7
Haemophilus_influenzae_6824_main 2.7 29.4 52.9
Haemophilus_influenzae_6824_main 2.7 34.1 52.3
Haemophilus_influenzae_6824_main 2.6 25.5 45.1
Haemophilus_influenzae_6824_main 2.5 42.3 50.0
Haemophilus_influenzae_6824_main 2.5 25.0 53.1
Haemophilus_influenzae_6824_main 2.5 39.3 67.9
Haemophilus_influenzae_6824_main 2.5 26.9 53.8
Haemophilus_influenzae_6824_main 2.5 50.0 68.8
Haemophilus_influenzae_6824_main 2.4 23.8 41.3
Haemophilus_influenzae_6824_main 2.4 35.3 64.7
Haemophilus_influenzae_6824_main 2.4 36.4 54.5
Haemophilus_influenzae_6824_main 2.3 57.1 64.3
Haemophilus_influenzae_6824_main 2.3 20.0 45.0
Haemophilus_influenzae_6824_main 2.3 38.1 76.2
Haemophilus_influenzae_6824_main 2.3 39.1 65.2
Haemophilus_influenzae_6824_main 2.3 23.2 46.4
Haemophilus_influenzae_6824_main 2.3 66.7 66.7
Haemophilus_influenzae_6824_main 2.3 50.0 78.6
Haemophilus_influenzae_6824_main 2.3 58.3 75.0
Haemophilus_influenzae_6824_main 2.3 36.8 78.9
Haemophilus_influenzae_6824_main 2.3 26.3 55.3
Haemophilus_influenzae_6824_main 2.2 25.0 53.6
Haemophilus_influenzae_6824_main 2.2 41.2 76.5
Haemophilus_influenzae_6824_main 2.2 31.0 62.1
Haemophilus_influenzae_6824_main 2.2 38.9 66.7
Haemophilus_influenzae_6824_main 2.2 28.6 45.7
Haemophilus_influenzae_6824_main 2.2 44.4 61.1
Haemophilus_influenzae_6824_main 2.1 53.3 66.7
Haemophilus_influenzae_6824_main 2.1 25.6 44.2
Haemophilus_influenzae_6824_main 2.0 50.0 80.0
Haemophilus_influenzae_6824_main 1.7 57.1 85.7
Haemophilus_influenzae_6824_main(1018025 - 1017021 of 1830138)
Query(1 - 320 of 328)
%Match = 47.2
%Identity = 49.7 %Similarity = 71.6
Matches = 161 Mismatches = 88 Conservative Sub.s = 71
Gaps = 4 InDels = 45 Frame Shifts = 0
Primary Frame = -2 [0, 320, 0]
aatttagtagagtgcggggtctcccgggtattacatgaagcacgtactgcccgaacttaaggcgggcgcctcggtaatct
tgctttatagaataaaatattcacttcgttttcgataagaataattgctgagtaactttctaaagggtagtgagtcttcc
gcggattaaaaggaagatgattctttaaatattattacaaataaattttcaagagtaatggtaataatatcttataggta
1017996 1017966 1017936 1017906 1017876 1017846 1017816 1017786
MSSLLIDLKGKELEQEEVELLSHPLVAGLILFTRNFENREQIQELIRSVRQRVKKPLLITVDQEGGRVQRFRDGFTMLPS
| | :|::| || |: |:|:|| | |:||| ||: : :|: | ::|| |:|:|| ||||||||| : |
MGPLWLDVEGCELTAEDREILAHPTVGGVILFARNYHDNQQLLALNTAIRQAAKRPILIGVDQEGGRVQ-LSRRVQQDPC
10 20 30 40 50 60 70
acgtcgactgagcgatgagggtcagggaagtgagtatgcgtgtgcgtcgaggcatttggaaggatgagtaggaccggagt
tactaactcccaatgtcaacggatccattctatatgtccttatgaaggctgaggtccatagctatcccttagtaacgtcc
ggttaaagaataagtttaaatgagaaagtcgttcgttttggtggtatagtttcttattaatgatacctttttgtaatgat
1017756 1017726 1017696 1017666 1017636 1017606 1017576 1017546
MQAFQETLSATEQVSFAKEAGWQMAAEMIALDIDLSFAPVLDLGHECRAIGDRSFSSDVKSAVNLATAFIDGMHQAGMAS
| : : : | :|:: || ||||:|| ||||||||||| | :|||||:|:| ||:: : ::|:: || |||:
AQLYARSDNGT---QLAEDGGWLMAAELIAHDIDLSFAPVLDKGFDCRAIGNRAFGDDVQTVLTYSSAYMRGMKSVGMAT
90 100 110 120 130 140 150
agactcgcgcgtggtctgactggcaaggataggccctcctatcaacggaacgcgattctgaccgagtatttagatcaata
cgaatcgagattcacataccaaagcaaattggatactaattcaaatacttccattacagagaccggcaagtaattgaata
atattcttttaactttaagtttttaaaatttctcatcaggtagtactgtgttcgttgatttgtattaatggaatacgaat
1017516 1017486 1017456 1017426 1017396 1017366 1017336 1017306
TGKHFPGHGHVLADSHLETPYDDRTKEEIFSGDLQPFQQLISQNKLDAIMPAHVIYSQCDSQPASGSKYWLKEILRKKLN
||||||||| |:||||||||||:| : : |: |: | |||:||||||| : |:|||||| ||||::||::|
TGKHFPGHGAVIADSHLETPYDER---DSIADDMTIFRAQIEAGILDAMMPAHVIYPHYDAQPASGSPYWLKQVLRQELG
170 180 190 200 210 220 230
tcgaattggcgaaggggagatggcaaagcaggtgcttctagcgggacgtgacacagaccctagccgctcattacagaata
tagcttcaatgtagcgttgattaggaactacggattttgaagagttattaatatcaaacattcgacgtagttaggttaga
catattcttaagacgaaggttagttaaactatcttaagttatatctaaattaattatagctgttatcaatatatagttgc
1017276 1017246 1017216 1017186 1017156 1017126 1017096 1017066
FQGTIFSDDLGMKGAGVMGNFVERSKKALNAGCDLLLLCNEREGVIQVLDNLKLTENQPHFMARQARLQSLFKRRVINWN
||| :||||| |:|| :|| ||::::|:||||::|:||:|| : ||| | :: : |||:|:: :
FQGIVFSDDLSMEGAAIMGGPAERAQQSLDAGCDMVLMCNKRESAVAVLDQLPIS--------VVPQAQSLLKQQQFTYR
250 260 270 280 290 300
gtatgcctacatcatggacactt
attcaagggtaaaatcatagggt
catatatgatttaaatttactga
1017036 1017006
DLISDQRWRLNYQKLADIQSRWL
:| : :||: || |
ELKATERWKQAYQALQRLIDAHS
320
Haemophilus_influenzae_6824_main(1007408 - 1007317 of 1830138)
Query(285 - 319 of 328)
%Match = 2.8
%Identity = 45.2 %Similarity = 64.5
Matches = 14 Mismatches = 10 Conservative Sub.s = 6
Gaps = 1 InDels = 17 Frame Shifts = 1
Primary Frame = -1 [15, 15, 0]
cttctccacacatattctaactcatacagatccgttcccgccacgc ggtagacacgggtcgttcggggtgggtt
acttgaatctaagtttataaatagtattcattcttttcacaattca taatactgatcaaaacgtataccgggctt
ggagctagagcagcagcacacgccagggaaagtaggaggaagggga ttcaaaccatctataggacttctgtcaag
1007472 1007442 1007412 1007382 1007338 1007308 1007278
QSLLCHQMPMHKWILLHLNKHLHSLKLMAKLLPVLLLPQAQQMLAQ----- DDLKAIRKLADEYQAWLHVDAAWGGALL
||: ::|||| :| | :||| : |||
PAERAQQSLDAGCDMVLMCNKRESAVAVLDQLPISVVPQAQSLLKQQQFTY_RELKATERWKQAYQALQRLIDAHS
270 280 290 300 310 320
Haemophilus_influenzae_6824_main(367200 - 366949 of 1830138)
Query(160 - 325 of 328)
%Match = 2.8
%Identity = 31.6 %Similarity = 51.9
Matches = 25 Mismatches = 35 Conservative Sub.s = 16
Gaps = 3 InDels = 294 Frame Shifts = 0
Primary Frame = -1 [76, 0, 0]
aggatatgacgtgcgcgagcaccagcctagctaggaggcctatagaccctgtgcgctgcagagagaatgttacttacgga
taattacgaatttttcatgtccactagtatgtatatattacatcacagtatgagcgcgagctttgcgccttcatcatgct
taataagcaaaagtacacgaaaaggatcagtctaattggtttactgagttagtccctaatttgtctagagcgatttttat
367387 367357 367327 367297 367267 367237 367207 367177
IEEILKSGKQVLVLVPEIGLTPQTVQRFKVRFNVEIDVLHSNLTDTQRLYVWDRARSGQSAIVIGTRSALFTQFSNLGAI
:| ||:
NGTQLAEDGGWLMAAELIAHDIDLSFAPVLDKGFDCRAIGNRAFGDDVQTVLTYSSAYMRGMKSVGMATTGKHFPGHGAV
100 110 120 130 140 150 160
atgggcgtttaccgatctcgcgtgagcgc acaatgt
ttaaaaaccaaaaagggaacgatctttca atatctt
tgcgactgtcagactgttcgacggtagta agctaaa
367147 367117 367069
ILDEEHDSSYKQQDSWRYHARDLAIVLAQ--------------------~~~~--------------------KLNISVL
| | :: | ::|| | |: | || :| |||
IADSHLETPYDERDS---IADDMTIFRAQIEAGILDAMMPAHVIYPHYD~~~~AGCDMVLMCNKRESAVAVLDQLPISV-
180 190 200 210 270 280
agtgacatgaaaagcagatcctgttaaggatagccctgagtaacaacagctacttgcaagccgagacgtcttaccgtgcg
tgccccgtagtaataagaaaatttcagcgaccctgatttataaaataagtcacttagtacataagaatttttagggtcct
gtttgataattttaaccacatataaaagattcatttctttgatataacgtaacggaagacccaactaggtcgtttctgca
367039 367009 366979 366949 366919 366889 366859 366829
MGSATPSLESINNVQNGKYQHLVLSKRAGNSTALRHFVIDLKNQNIQNGLSKPLLERMKAHLEKGNQVLLFLNRRGFAPV
| :|: | |: | ::| : : :||
----VPQAQSLLKQQQFTYRELKATERWKQAYQALQRLIDAHS
300 310 320
Haemophilus_influenzae_6824_main(598579 - 598187 of 1830138)
Query(61 - 122 of 328)
%Match = 2.8
%Identity = 27.0 %Similarity = 46.0
Matches = 17 Mismatches = 33 Conservative Sub.s = 12
Gaps = 1 InDels = 207 Frame Shifts = 0
Primary Frame = -3 [0, 0, 62]
acgaacggaaggcgggagggagtaggaaggattgaggcaacgcagtcgcgatggggcaaaggcgaagtgtgctgcggctt
tacaagaataatgcgatccctgtaatccgactgctacctttagtatcacttctctacacacaaaatgtctggtcaaacct
gcttataataattatccattcaaatattttaatattaatctgtgacagaacttgaaaatatcaaagcaaattaaaactac
598730 598700 598670 598640 598610 598580 598550 598520
MHANKREEIKEVRAGDIAAAIGLKDVTTGDTLCAIDAPIILERMEFPEPVISVAVEPKTKADQEKMGLALGRLAQEDPSF
||| : | | |:||
MGPLWLDVEGCELTAEDREILAHPTVGGVILFARNYHDNQQLLALNTAIRQAAKRPILIGVDQEGGRVQLSRRVQQDPCA
10 20 30 40 50 60 70 80
cgcagggtggaaatgaggtctgaaggcaacgtagggaagaccgttcgaacacgaggggacgactggcgctgcggagttct
gtacaaacgacttcgtgatatatttagtagatatacatgacatcagactgcgtaatagaacaacggggaagatttatact
ttcatgattacttttgtggcatcttttgatgcagactttaaaaactatcttttttaatactaatttctatttttccacaa
598490 598460 598430 598400 598370 598340 598310 598280
RVHTDEESGETIISGMGELHLDIIVDRMKREFKVEANIGKPQVSYRETIRTRVNDVEGKHAKQSGGRGQYGHVVIDLYPL
::: ::| :
QLYARSDNGTQL--------------------------------------------------------------------
90
gcggcgtgtgagaagggacggtacgggagacgccatgctggtcgggcggctctgttcgggttgtgtacggt
acagcgaattaataggttcgaatcctaagtaaatacgctcgacttatgtgtatgcaaataccatctatccc
taactttatacacattatttactacttattaaatattaattcaattttatacctacttgtatgaatattgt
598250 598220 598190 598160 598130 598100 598070
DPEGPGYEFVNEIKGGVIPGEYIPAVDKGIQEQLKSGPLAGYPVVDLGVRLHFGSYHDVDSSELAFKLAAS
| |: |: | : | :|||
-AEDGGWLMAAELIAHDIDLSFAPVLDKGFDCRAIGNRAFGDDVQTVLTYSSAYMRGMKSVGMATTGKHFP
110 120 130 140 150 160
Haemophilus_influenzae_6824_main(837277 - 837206 of 1830138)
Query(251 - 273 of 328)
%Match = 2.7
%Identity = 45.8 %Similarity = 66.7
Matches = 11 Mismatches = 7 Conservative Sub.s = 5
Gaps = 1 InDels = 3 Frame Shifts = 0
Primary Frame = -3 [0, 0, 23]
aagtaaaaaataccaaattttgactgataaacgcttcaagccaacactataacattttttttcttggtaacaccacaaca
gttaactatcacgtgatattaatttcttatattcttctaaagaaatataaatttggacttacgaaatctcaaatataata
gttactcaattccaaggtctcatttttttctattagtcgttcgatctgatgatttattctatttggctgaaattgtttat
837536 837506 837476 837446 837416 837386 837356 837326
RIV*NTIKITYTRLRKMYFFYEILFAIFNINLVPLLPIKDHRKKHIHLKYKILIC*YSFF*SRY*EVSMTQKHLKLNNLN
ATTGKHFPGHGAVIADSHLETPYDERDSIADDMTIFRAQIEAGILDAMMPAHVIYPHYDAQPASGSPYWLKQVLRQELGF
170 180 190 200 210 220 230
ccccggaaaatggtagagacgacgccatgtggagcacagagagtagagggctagaacgactaatcagaacgagaaaaggg
aataagtgtttggttgtgcccattaattacgtaatcttgaaccttacgtgctttaagtagttccatgcacacgaattcga
acatttgccgttatgtcctacatcaacattcagtcacactcacttctcactatattacatatcctttataatcaagttta
837296 837266 837236 837206 837176 837146 837116 837086
QHLHDGMSIMFGGFMGIGTPAKLVQQILDSGVKDLTLIGNDTAFIDTGVGPLIVNNRVKRLITSHIGTNPETGKKMIAGE
:| ||: || ||:| |: |: |
QGIVFSDDLSMEGAAIMGGPAERAQQSLDAGC-DMVLMCNKRESAVAVLDQLPISVVPQAQSLLKQQQFTYRELKATERW
250 260 270 280 290 300 310
Haemophilus_influenzae_6824_main(871837 - 871736 of 1830138)
Query(285 - 318 of 328)
%Match = 2.7
%Identity = 29.4 %Similarity = 52.9
Matches = 10 Mismatches = 16 Conservative Sub.s = 8
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -3 [0, 0, 34]
tggacgcgattgcctcatcgcggacgatttcgcaaatcttagcgagggaagtcgcccgcggatctgcatgaagggagtta
taaccccaaccacttagcacggaggttgtccaagactcttcctataattatgaaatgatgcaaagtattaaagcctggca
aatgactaacctttcattattgatacttctctttaagaagcatgtaagtaaggaattgttgacaggattacagaaggtgc
871916 871886 871856 871826 871796 871766 871736 871706
LEDTPAPEKSSDPLFQSSQARGESRVICFSPDHSKTLPLLTALEIEEVIKVWQEQLRELGAKYQWVQIFENKGAAMGCSN
||: : : ::| | ||| | :| | ::
AIMGGPAERAQQSLDAGCDMVLMCNKRESAVAVLDQLPISVVPQAQSLLKQQQFTYRELKATERWKQAYQALQRLIDAHS
260 270 280 290 300 310 320
Haemophilus_influenzae_6824_main(276103 - 275972 of 1830138)
Query(255 - 298 of 328)
%Match = 2.7
%Identity = 34.1 %Similarity = 52.3
Matches = 15 Mismatches = 21 Conservative Sub.s = 8
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -3 [0, 0, 44]
atattagggggtattgcaagagcgacgctatagatgaacttgacatatgagcgggggtctatgaaaggtctcacaagcgt
atatcaacagaactctgacgaactctaatcttagtaaactcaatatctaaaatacgctgaattaaagatgtaactaaaat
aaaactctgctcaattccacaatgctgaatgtacattagaatgcattaatccttataattaaggtgcaccgtcaaaggag
276332 276302 276272 276242 276212 276182 276152 276122
KLKLSNDAEGDYTLSVRNTGKEPVTLEQLTLIESLDNKPLSDKLKFTLENDHVDAGALRYKLVKNKGEFRLHNPIKEQEL
ADSHLETPYDERDSIADDMTIFRAQIEAGILDAMMPAHVIYPHYDAQPASGSPYWLKQVLRQELGFQGIVFSDDLSMEGA
180 190 200 210 220 230 240
cagtgaggcggcatggacggcaggacaaagagctaaggttgactgcactagtggacggcaagacaaacaaaagctaagta
taattgcaacaactacaataaccaaaagacacgcggcttcaccccagttactacaataaccacacgacacaaggcagctg
cttaaaagaaaaaaacaatagttaaaatgaaggaaagggttcgttacgacaaacaatagttaaaatgaaaaaggaaaagt
276092 276062 276032 276002 275972 275942 275912 275882
LNDLVRAEQAEQTLEAKQVEQTAEKQKSKAKARSRRAVLSDTPSAQSLLNALEAKQVEQTTETQTSKPKTKKGRSKRALS
||:|:|:|:| :: | | : :| | |||||
AIMGGPAERAQQSLDAGCDMVLMCNKRESAVAVLDQLPISVVPQAQSLLKQQQFTYRELKATERWKQAYQALQRLIDAHS
260 270 280 290 300 310 320
Haemophilus_influenzae_6824_main(553175 - 553020 of 1830138)
Query(148 - 197 of 328)
%Match = 2.6
%Identity = 25.5 %Similarity = 45.1
Matches = 13 Mismatches = 27 Conservative Sub.s = 10
Gaps = 1 InDels = 6 Frame Shifts = 0
Primary Frame = -2 [0, 50, 0]
gggggatggaggtagggggggtgaagatcgcgtcggggctctggagacactatcccaagcggcgtattgtaatggaagac
tagtgaaattgactaaccgactaaccattgtaacggcctcgtcaagccagtctcgctcagcgtatgtcgtactccactaa
cttaaatagaaattttttcacttaaaaataattatcgatttagaatgattcatatagattactttttttaaatcatatta
553350 553320 553290 553260 553230 553200 553170 553140
VDGVGKYEVIGESIDDAAGEAFDKTAKLLGLDYPGGAALSRLAEKGTPNRFTFPRPMTDRAGLDFSFSGLKTFAANTVNQ
|:|: | :
AQLYARSDNGTQLAEDGGWLMAAELIAHDIDLSFAPVLDKGFDCRAIGNRAFGDDVQTVLTYSSAYMRGMKSVGMATTGK
90 100 110 120 130 140 150
gaaagggcagcaaggagtgtcgggggacgaatacgtagagtactgaggggagaaaccgacgctacatggggttcccctta
ctaaagattaacacatcactaacttactctagagctaacgaagtttcggtgcaaatgactcattaatggattacacatgc
atacgcagagataatttttcatgggtttctatgtagaaactatagtgaggcataacaagtgcagatatcagtttatatta
553110 553080 553050 553020 552990 552960 552930 552900
AIKNEGELIEQTKADIAYAFQDAVVDTLAIKCKRALKETGYKRLVIAGGVSANKKLRETLAHLMQNLGGEVFYPQPQFCT
| :| : : | :|:: | : | || | |
HFPGHGAVIADSHLETPYDERDSIADDMTI--FRAQIEAGILDAMMPAHVIYPHYDAQPASGSPYWLKQVLRQELGFQGI
170 180 190 200 210 220 230
Haemophilus_influenzae_6824_main(507940 - 507863 of 1830138)
Query(301 - 326 of 328)
%Match = 2.5
%Identity = 42.3 %Similarity = 50.0
Matches = 11 Mismatches = 13 Conservative Sub.s = 2
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -3 [0, 0, 26]
ataaacttgtaatttaatattcattctttaagatgctttaagctaagcatatcacacttaccgctaacacaactaaggat
tcataccagtatcacattcctatttctgaacttacttatgatgatgaattaaaaatgttaataggatggataacttattt
aaacttataggcgatcttacaattaatccatgctagttctaggatcaatgcaaaaggatgaaatgatcgaatattttgat
508067 508037 508007 507977 507947 507917 507887 507857
ISKINPSYGLKIS*SNIFTSLQIFLPFCYKTVIYALFYFSKVR*ISEQILN*QKQMRLFKQLERWKIRRQINQSIIDVIF
| | :| |||| | | :||
AIMGGPAERAQQSLDAGCDMVLMCNKRESAVAVLDQLPISVVPQAQSLLKQQQFTYRELKATERWKQAYQALQRLIDAHS
260 270 280 290 300 310 320
Haemophilus_influenzae_6824_main(237230 - 237135 of 1830138)
Query(294 - 325 of 328)
%Match = 2.5
%Identity = 25.0 %Similarity = 53.1
Matches = 8 Mismatches = 15 Conservative Sub.s = 9
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -2 [0, 32, 0]
cgttcgtcgcgaatgaagtcccattcaagtacctcttaactctttgctgcatccgtcctccgcctccaaattcttagacg
catcatgaagagatgttaatgaacgaggagaaagtttatttcagtaagtagcataagacatttaggacagttattcatcc
tttactgatcttttagtctacttgcattttttagtgaattggctagggtagttgatcagtttttggagaaggatagtttt
237336 237306 237276 237246 237216 237186 237156 237126
PDFSHVWQDRDSNFGMIDYLRHNSCQSSDCNHQWLLLKILLPYCLEQWVQRSHLEYRQSHLVLHWRQTKRLLQFLTDIPA
: ::: :: ||: |:| : || | |
AIMGGPAERAQQSLDAGCDMVLMCNKRESAVAVLDQLPISVVPQAQSLLKQQQFTYRELKATERWKQAYQALQRLIDAHS
260 270 280 290 300 310 320
Haemophilus_influenzae_6824_main(1405677 - 1405594 of 1830138)
Query(31 - 58 of 328)
%Match = 2.5
%Identity = 39.3 %Similarity = 67.9
Matches = 11 Mismatches = 9 Conservative Sub.s = 8
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -1 [28, 0, 0]
cgaccattaatggccttttagagactgcctcacaagctaaactgcgctgccgtaataacttaattgggtaagatctatcg
gaaaaaatatcttatataatctttgatcactaaaaaaaaagttctcattaacctaattataattaagttttcaatcttat
acgttaaaatttttatttcactgagacattaaaattcttgatgaggtttgataagtatttagttgtgtaaacactattgt
1405738 1405708 1405678 1405648 1405618 1405588 1405558 1405528
RDKHHK*LKISVVHLYFYYIAIVIR*VPHSLKQKNDHYNKRLLALAHFVQQASIKYIIHF*KIF*DGVLIIAKYLSIFQV
| :| | |::|||| ::||: : |:
MGPLWLDVEGCELTAEDREILAHPTVGGVILFARNYHDNQQLLALNTAIRQAAKRPILIGVDQEGGRVQLSRRVQQDPCA
10 20 30 40 50 60 70 80
gtaaattccagagatgcc
cccattttataaaattat
tactttctttagtacttc
1405498
ASTNIFFLHIEKDKFVHL
QLYARSDNGTQLAEDGGW
90
Haemophilus_influenzae_6824_main(994627 - 994550 of 1830138)
Query(283 - 308 of 328)
%Match = 2.5
%Identity = 26.9 %Similarity = 53.8
Matches = 7 Mismatches = 12 Conservative Sub.s = 7
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -3 [0, 0, 26]
catccacttctgaatgctgggagaagggaagttgagaggctgcccacatgctgtctccttagagcataggggttggaaag
aaggatgtcatgtttcaggtcttctgcttggatggatgtgtccaagactgaaataagatcaatgcatccatcttatcaag
atgaatcgtatggtaactcggtgtttgggtgttctattgtaagaatagagatatttcatttatgactgaaccttcatatt
994700 994670 994640 994610 994580 994550 994520 994490
QNWRQIRLSQFGMILAHCGVAIVTIGAVMSGYFGSEIGVRLAPQQSQTLGQYEFHYRQFSNEIGPNFTAEVAFFDVTKNG
:: : : || | | :| ||::
AIMGGPAERAQQSLDAGCDMVLMCNKRESAVAVLDQLPISVVPQAQSLLKQQQFTYRELKATERWKQAYQALQRLIDAHS
260 270 280 290 300 310 320
Haemophilus_influenzae_6824_main(1683739 - 1683692 of 1830138)
Query(121 - 136 of 328)
%Match = 2.5
%Identity = 50.0 %Similarity = 68.8
Matches = 8 Mismatches = 5 Conservative Sub.s = 3
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -3 [0, 0, 16]
gccgaatgtagccaacatggtcattgtcgactagttcagctcctttctcgacacgctacagccatcagcccagattcggc
taatgttaaaatcttatatagggtaaggttacacttcgtatccggcatatgaattaggtgtaaaatataagatctggttg
ttaagttgactgaacaatttaattttcaatgaggttcctatggaagttgataaggtagagtatataggcgtcaaccatct
1683782 1683752 1683722 1683692 1683662 1683632 1683602 1683572
VHQVRIFE*NDLPIIQIYVD*RSFYDCRVIQSKAFFPSVQFPP**SHFQVSQKLVH*RLRVQHKYLKVHQRNVTFCRVVR
:||| | ::|| ||
GWLMAAELIAHDIDLSFAPVLDKGFDCRAIGNRAFGDDVQTVLTYSSAYMRGMKSVGMATTGKHFPGHGAVIADSHLETP
110 120 130 140 150 160 170
Haemophilus_influenzae_6824_main(109284 - 109099 of 1830138)
Query(191 - 253 of 328)
%Match = 2.4
%Identity = 23.8 %Similarity = 41.3
Matches = 15 Mismatches = 36 Conservative Sub.s = 11
Gaps = 1 InDels = 3 Frame Shifts = 0
Primary Frame = -1 [62, 0, 0]
cagaagttaatggggagaggaacgggatagcggaaattagggctagaatggggaagccgtaagactacgacgcggtcctg
aagctctttccaaacccaagctattacttcgaaatcagttgaccgcaatgattaaggggctcgatatagtagatcacatc
tacctaagtcttagtcaatatacgtggaggttaattttgtcgagttacaattcattcccataatcttattaacactgtat
109426 109396 109366 109336 109306 109276 109246 109216
HKGTIALLITSDEEATAKDGTIHVVETLMARDEKITYCMVGEPSSAKNLGDVVKNGRRGSITGNLYIQGIQGHVAYPHLA
| | : : || |||
DVQTVLTYSSAYMRGMKSVGMATTGKHFPGHGAVIADSHLETPYDERDSIADDMTIFRAQIEAGILDAMMPAHVIYPHYD
150 160 170 180 190 200 210
gacacaggcttcgtaatctg agagttccaaccagaacggagaaagacggttactatcttaggaggaaacagggacgaca
aactaacctttaatccaaga agaattcccgtatcatacgcggaattccatatatatgagcatcaattaaatcattaaaa
acactaagatgaaagtcagt actatcgaacaattctcgtgatttatttgattgctgttcaacgtactgaagtagaaact
109186 109156 109129 109099 109069 109039 109009 108979
ENPIHKAALFLQELTTYQWD-KGNEFFPPTSLQIANIHAGTGSNNVIPAELYIQFNLRYCTEVTDEIIKQKVAEMLEKHN
| : :|::: : :| | |:: | | |
AQPASGSPYWLKQVLRQELGFQGIVFSDDLSMEGAAIMGGPAERAQQSLDAGCDMVLMCNKRESAVAVLDQLPISVVPQA
230 240 250 260 270 280 290
Haemophilus_influenzae_6824_main(795298 - 795248 of 1830138)
Query(211 - 227 of 328)
%Match = 2.4
%Identity = 35.3 %Similarity = 64.7
Matches = 6 Mismatches = 6 Conservative Sub.s = 5
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -3 [0, 0, 17]
ttctaaaattatttcacagttcactagactgaacatgatggtcttaggtacggttgtacaatatgaattaaagacggacc
cctccactccgaggaggatccctgtccccccaactgtactgcctcgcctaacactacccttttcgtagtgatcccccacc
gaagctcaaaatcatagttggagttaagagattaagtatttgtagacttgcaactttaggtatccatcacatcacatgaa
795338 795308 795278 795248 795218 795188 795158 795128
SSLSTNTISSRYC*HRRNVSSPMRFTATPSANNPIWVKSVGSPLSRAAFKHAESFDSTPMILISGINCLSKIATPAAKPP
: | |:: :| |:| |
TIFRAQIEAGILDAMMPAHVIYPHYDAQPASGSPYWLKQVLRQELGFQGIVFSDDLSMEGAAIMGGPAERAQQSLDAGCD
200 210 220 230 240 250 260
Haemophilus_influenzae_6824_main(1305443 - 1305348 of 1830138)
Query(34 - 66 of 328)
%Match = 2.4
%Identity = 36.4 %Similarity = 54.5
Matches = 12 Mismatches = 14 Conservative Sub.s = 6
Gaps = 1 InDels = 3 Frame Shifts = 0
Primary Frame = -2 [0, 32, 0]
agggtacgcttgctcgaggtgggaagggatgtccggcgagattgg tgagcagaacggatgccgagtaacgggaaaagcc
aagcatgaattggacacccttcatcaaatgctgggcaagaatacc acacaaccacttttcaatagaatcacagaaccaa
attatttaccctttaattaatttgcttacgaacttactcaaatgc taaaatagaatgtagtatattattagatatctca
1305513 1305483 1305453 1305423 1305396 1305366 1305336 1305306
KDGAYIREHFFGRYPETAALVADMTDDEIWALRRGAHDSEKLYAA-YAKAQNATKPVVILAHQVKGYKIPEAESKNTAHQ
| ||:::| | | | | :|::| | |
MGPLWLDVEGCELTAEDREILAHPTVGGVILFARNYHDNQQLLALNTAIRQAAKRPILIGVDQEGGRVQLSRRVQQDPCA
10 20 30 40 50 60 70 80
taaattgacagtcgttgtctaggcgg
caatcaagtagtgattatctcaaata
taagtcactatctcctaaaactaaaa
1305276 1305246
SKKMSYESLKGFRDFFELPLTDEQVE
QLYARSDNGTQLAEDGGWLMAAELIA
90 100
Haemophilus_influenzae_6824_main(1325895 - 1325854 of 1830138)
Query(162 - 175 of 328)
%Match = 2.3
%Identity = 57.1 %Similarity = 64.3
Matches = 8 Mismatches = 5 Conservative Sub.s = 1
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -1 [14, 0, 0]
acaaaaaggaacatgatgtggccgcgcgcgataagatctacgactacaaatatctttacgaggaagaatcgggcacttct
taaagtacgcctttcgttagttactgcgagatttcgatccaagataagcttgttccttagttctccccttttttatccga
tattccgaccattcccttccactccgaaccatttccttcttacaaaactcgcatacagactcgtaaaagttagattaatt
1325944 1325914 1325884 1325854 1325824 1325794 1325764 1325734
IQNNSIKAGTTLIFASFVYGVLHALGPGHGKFIIASYLSTHESQLKQSTILSLLSSLMQGIVAITATTLLVVVLNLSSRY
|||| | |:| |
QTVLTYSSAYMRGMKSVGMATTGKHFPGHGAVIADSHLETPYDERDSIADDMTIFRAQIEAGILDAMMPAHVIYPHYDAQ
150 160 170 180 190 200 210
Haemophilus_influenzae_6824_main(120631 - 120512 of 1830138)
Query(265 - 304 of 328)
%Match = 2.3
%Identity = 20.0 %Similarity = 45.0
Matches = 8 Mismatches = 22 Conservative Sub.s = 10
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -3 [0, 0, 40]
cgttgtatagcgacctcttggttcttagaccaatgtaaagctttttactggctatacattgtcactatagtccgcaccga
tccttcatctccacctcaggaatctcctcttaacgctatacggatcatttcccagctcccccctctttatgccggaccct
aacatattttaaaaaaataaaattgttttttttacaaaaactgttaattacatcctaataaactaaatttcaagacgaca
120890 120860 120830 120800 120770 120740 120710 120680
LASLVSNFTVPAKPPLPY*GE*FPLSTVTLLNNSGSIKIEPCWYFSKLFVAPSNCTLTSSASPIPLIFNVCPPGRNPPAI
ADSHLETPYDERDSIADDMTIFRAQIEAGILDAMMPAHVIYPHYDAQPASGSPYWLKQVLRQELGFQGIVFSDDLSMEGA
180 190 200 210 220 230 240
tacgaataatggttgtmttattttaagccgattctttgtaaagaattctgtggtttggatatacaagaaaaacttaaata
tccgatttatcctccgggctttgtacagcggtttcctttcttgaaccttataatgtctctggtccgtcaaatgtttattt
catcgaatattaacttttgatcttttaaattaaaaaagcaaattcctaaaaaatttgtattaatagattagataataaca
120650 120620 120590 120560 120530 120500 120470 120440
FTPGKILIKFAALSACXCSIFFCFNTERPGSLLLSSLVFTIIGNNSSLLELEEFCFAVTFS*IPTRVTNKKIRLLIKIFI
| : : | :| | ::: |||: ::| :
AIMGGPAERAQQSLDAGCDMVLMCNKRESAVAVLDQLPISVVPQAQSLLKQQQFTYRELKATERWKQAYQALQRLIDAHS
260 270 280 290 300 310 320
Haemophilus_influenzae_6824_main(395939 - 395877 of 1830138)
Query(269 - 289 of 328)
%Match = 2.3
%Identity = 38.1 %Similarity = 76.2
Matches = 8 Mismatches = 5 Conservative Sub.s = 8
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -2 [0, 21, 0]
ctatagcgagggcgggacggatggaaagtgattcgggccttgagaaggtggaaaccaaaacggcgcgtaataggcagaag
ctcctacaattctgcctacatttgaacacattttattctctgtactggttaattcgacctctcgcaatcctaagacctct
aacactttatgatttataattacgtattttgaatttcgtcactgggcaagaattattaattgttgagttttatgagagtt
395970 395940 395910 395880 395850 395820 395790 395760
PLTSIDPDKVVALGAAIQADILVGNKTDSDMLLLDVVPLSLGIETMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMTV
:|: || :| : :|| :|:|:
AIMGGPAERAQQSLDAGCDMVLMCNKRESAVAVLDQLPISVVPQAQSLLKQQQFTYRELKATERWKQAYQALQRLIDAHS
260 270 280 290 300 310 320
Haemophilus_influenzae_6824_main(305200 - 305132 of 1830138)
Query(227 - 249 of 328)
%Match = 2.3
%Identity = 39.1 %Similarity = 65.2
Matches = 9 Mismatches = 8 Conservative Sub.s = 6
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -3 [0, 0, 23]
tggtgctaatagcgagggactgactaaccacggggcatgcggtccgagtgtcaccgacgtcagtgccggttaattcgcgc
tcttgatgacaggtcaaatatcaatttatataacggatcaactgggaacatctgattgatgtgggagcattgtttatata
tggagtacagagtaaaatcaattaagtgtagtttgtaagatgttttaattcgttatctatctttgatttagagcaagata
305462 305432 305402 305372 305342 305312 305282 305252
FAVLGHLSKSKGRVTEEDIQLANQLMIQLKLDDAGRKLAQDAFRRGKESDFPIRQVIREFRIGCGQRADLLRMFLQVQVQ
AFGDDVQTVLTYSSAYMRGMKSVGMATTGKHFPGHGAVIADSHLETPYDERDSIADDMTIFRAQIEAGILDAMMPAHVIY
140 150 160 170 180 190 200
ggtggtgccgagaggctgagggcgctcactgcaagagaggcgtacggttcatccggtcggtctcccaaggtccgtgcata
cctcacataaaaaattattcaatgtcgtataattctatccgctcaggtaaaaaagcaaggaaaaaaagggaaaccgccta
attctaatcatgaagttgctaatttttgataagtggagttatttactttgataatctatccataaattttcattacatat
305222 305192 305162 305132 305102 305072 305042 305012
AAFADSELHENEKEVLYVIAEELGLSRMQFEQMIAMEMAARAFTQGGFYQKYQQGAYQGGYQYQQQNSGGYQHASGPTLN
|: :|||: : | ::|| ||
PHYDAQPASGSPYWLKQVLRQELGFQGIVFSDDLSMEGAAIMGGPAERAQQSLDAGCDMVLMCNKRESAVAVLDQLPISV
220 230 240 250 260 270 280
Haemophilus_influenzae_6824_main(84256 - 84089 of 1830138)
Query(272 - 327 of 328)
%Match = 2.3
%Identity = 23.2 %Similarity = 46.4
Matches = 13 Mismatches = 30 Conservative Sub.s = 13
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -3 [0, 0, 56]
agcgaagtctacgctccgattcattcccactggcttcggcgtccgctccacggcactgcatcgctcgctcaaccgccacc
aggacaaggacagatagcaaacagctgaatattgtctcaattaggtttttaaatccttcaagaagtcctcttaaataaaa
agttcttcatatcattcaaataataggattctgatttaagggtaccgtaacgaagactcattgggtgatcacgtgtatct
84296 84266 84236 84206 84176 84146 84116 84086
KGRDTNDCRYTHGQFHRAK*YPKCSLRQNLYVVRFSLAEQVLHRGLLLLIHEELTPFVPKYREQWLAPFPIIQHELQNHH
|: |:: | | |: : || ::::| | |:| : :| : |
AIMGGPAERAQQSLDAGCDMVLMCNKRESAVAVLDQLPISVVPQAQSLLKQQQFTYRELKATERWKQAYQALQRLIDAHS
260 270 280 290 300 310 320
Haemophilus_influenzae_6824_main(754766 - 754740 of 1830138)
Query(219 - 227 of 328)
%Match = 2.3
%Identity = 66.7 %Similarity = 66.7
Matches = 6 Mismatches = 3 Conservative Sub.s = 0
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -2 [0, 9, 0]
acgtaccaattcgagaatactgatttaggttgacttcataagcccatgaagatattcatgatttgagggaccatttccta
tccgcccgatccaaacacccgcttcgctgctgacagtaccacctcactccgcttcgcgctgcccacaatacatgatttgc
gttcgaattagagagcacattgtttcgtttttgatgtaattgggtaagtatacttattggttttatagaaaataaggact
754830 754800 754770 754740 754710 754680 754650 754620
MPACTPPSNLSPEKETKSTPCAIFSCTVGSFGKPYWLKSTNAPLPKSVTTGTFIS*PSSVSSSSETEEVKPQI**LLLCT
| |||||
TIFRAQIEAGILDAMMPAHVIYPHYDAQPASGSPYWLKQVLRQELGFQGIVFSDDLSMEGAAIMGGPAERAQQSLDAGCD
200 210 220 230 240 250 260
Haemophilus_influenzae_6824_main(1623572 - 1623531 of 1830138)
Query(28 - 41 of 328)
%Match = 2.3
%Identity = 50.0 %Similarity = 78.6
Matches = 7 Mismatches = 3 Conservative Sub.s = 4
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -2 [0, 14, 0]
attaagttaatgctttccctcctatcgcatttagtcatcaagcataatgcttgaataagcattcgacgttcattgaaacc
aaaaatgttagtagttacatgcttgggtttttaaaaataaaagttggatatacaagacagaagacatcctcttacgcaac
atagttaacacctattagccctaggtactatgctccctagaaccgctagttccgggcaacaacacatagctatggaggac
1623621 1623591 1623561 1623531 1623501 1623471 1623441 1623411
KY*KNV*LIKCVH*FFQPHFRPLMWRGLILFLNDYHNFQKKERILSS*VHFYAKKWNTERK*CQAKLASFPIF*ARTKQP
|:||| :||: |:
GPLWLDVEGCELTAEDREILAHPTVGGVILFARNYHDNQQLLALNTAIRQAAKRPILIGVDQEGGRVQLSRRVQQDPCAQ
20 30 40 50 60 70 80
Haemophilus_influenzae_6824_main(1626795 - 1626760 of 1830138)
Query(123 - 134 of 328)
%Match = 2.3
%Identity = 58.3 %Similarity = 75.0
Matches = 7 Mismatches = 3 Conservative Sub.s = 2
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -1 [12, 0, 0]
taattgtgatgtttgaagtttacggtgatggagccgtgggtaaatcaaaggatttttgtgcaggtttaaagaatagctca
gccttcgaaggctgctgaacgacgagcggagtaagctgaagtggtcaccgcttaccgagaggccatagaacgatcctgca
ctgaggcagcagtggttcatcgtgtttgttctttttcttagtagaaaaattcctcacttgaaactccaactaatcattaa
1626850 1626820 1626790 1626760 1626730 1626700 1626670 1626640
CTTLLACEKCGSFWAISD*SCKPGDCARCDGIDHRAFGDEWIRRLPKTTGAIFYSSCDCERRAAYFYRKNARKFTALCPK
| | :|||||:
DGGWLMAAELIAHDIDLSFAPVLDKGFDCRAIGNRAFGDDVQTVLTYSSAYMRGMKSVGMATTGKHFPGHGAVIADSHLE
110 120 130 140 150 160 170
Haemophilus_influenzae_6824_main(701594 - 701538 of 1830138)
Query(276 - 294 of 328)
%Match = 2.3
%Identity = 36.8 %Similarity = 78.9
Matches = 7 Mismatches = 4 Conservative Sub.s = 8
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -2 [0, 19, 0]
atgtccccttcactgaagcgaggtgaggagggataaaacatgcgtcagtcgaagggatacaactgggcagctgagctgag
ctatgccactcacttttaacgcgagtgagctattgatatattcgcgtgttgaagcgaccttattcgatcctcgctatcag
ttattagacggtcaggtgagtattcccatgaatatatagtagatgcttacgattaaaaagtatagaagcatacgaaatat
701646 701616 701586 701556 701526 701496 701466 701436
TFEFRPPQSLPNPLVMIEQASAGYGIGESAVEILSKIKLNLVPGSRIGLLGKNGAGKSTLIKLLAGELTALSGTVQLAKG
|||| :| :: :::|| ::
AIMGGPAERAQQSLDAGCDMVLMCNKRESAVAVLDQLPISVVPQAQSLLKQQQFTYRELKATERWKQAYQALQRLIDAHS
260 270 280 290 300 310 320
Haemophilus_influenzae_6824_main(1169655 - 1169542 of 1830138)
Query(40 - 77 of 328)
%Match = 2.3
%Identity = 26.3 %Similarity = 55.3
Matches = 10 Mismatches = 17 Conservative Sub.s = 11
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -1 [38, 0, 0]
acaagcttgggaaatcattcccaactcataaggagcattactcgcacggcagagactgcggtgtgactctgattcgctga
ttttgccgtgatttcagtaaatataacagatattccaggacttcgtcatgactatctgagctatgcgagtgactgaaaat
tattcatgtctggggccgcgagatatacctttggagtgtgtgtgagaggtggtagaagcgctagagtttaagtgtaattg
1169743 1169713 1169683 1169653 1169623 1169593 1169563 1169533
ILIIGPSWVGDMMMSHSLYQQLKIQYPNCNIDVMAPNWCKPLLARMPEVRKAIEMPLGHGAFELGTRYRLGKSLREQYDM
: ||| :|:| : |: | : | | :| : :::
MGPLWLDVEGCELTAEDREILAHPTVGGVILFARNYHDNQQLLALNTAIRQAAKRPILIGVDQEGGRVQLSRRVQQDPCA
10 20 30 40 50 60 70 80
gagtcattatgtacttgaagcccgtaggactattagt
ctttcactaccttcttcattaggggagaggatttaat
attgttagaggtttccaatcttctgacactttagtta
1169503 1169473 1169443
AIVLPNSLKSAFIPFFAKIVHRRGWKGESRYILLNDL
QLYARSDNGTQLAEDGGWLMAAELIAHDIDLSFAPVL
90 100 110
Haemophilus_influenzae_6824_main(883822 - 883739 of 1830138)
Query(171 - 198 of 328)
%Match = 2.2
%Identity = 25.0 %Similarity = 53.6
Matches = 7 Mismatches = 13 Conservative Sub.s = 8
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -3 [0, 0, 28]
cggcaagtaacagaataataactctaaaagccgtaagctatcacaccagtagcacacaacccacaaacagatcgaagggt
ttttcacatcaatctcttaacattcctgttggctactggattatataattctgaaataaatgatggaatcaccttatatt
cggccctgtagcgggattacacgttagaggccagtacgaaaatccgacgtggggggcggggagagcgagttaaagttaaa
884069 884039 884009 883979 883949 883919 883889 883859
LVVLTNA*ITQNVTMSII*NTHLLSTMRMVRRALNTVR*KLLNLNLQNVFTVRKQKLKKQLRKLRSKQMANSPVMNVEVL
CAQLYARSDNGTQLAEDGGWLMAAELIAHDIDLSFAPVLDKGFDCRAIGNRAFGDDVQTVLTYSSAYMRGMKSVGMATTG
90 100 110 120 130 140 150
ctacgagcgcctaatcgctgacattcggtgtaagacgctcttctttcagatgttgaagaaacatgtaattcgtagcacag
gaacataaacatgcaatcaaaaccttactgataaatacctcaggcggtctggcggtttaaacatcgacttgaaggatgta
ccttactagatacctaattttatagttgacttgtataatttttgtctggccttcgggatcaaagttatcattccctgtcg
883829 883799 883769 883739 883709 883679 883649 883619
RYNPEIDQEPHLSTYQVPYDNQTSLLDALGYIKDKLEPSLSYRWSCRMAICGSCGMMVNNKPKLACKTFLRDYSGHMRIE
| : ||| : |: | : : ::| :
KHFPGHGAVIADSHLETPYDERDSIADDMTIFRAQIEAGILDAMMPAHVIYPHYDAQPASGSPYWLKQVLRQELGFQGIV
170 180 190 200 210 220 230
Haemophilus_influenzae_6824_main(638345 - 638295 of 1830138)
Query(284 - 300 of 328)
%Match = 2.2
%Identity = 41.2 %Similarity = 76.5
Matches = 7 Mismatches = 4 Conservative Sub.s = 6
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -2 [0, 17, 0]
ataaacagctcttaattgcaccccctacctggggtagcagcccggctccccattgtcgcgcagtagtccgtccccacctc
ataaaaatcatatatttaaccatagttagtgtacaatatttacatacttgaaattttttaaaaagctaacactaacgaaa
tttaactaatttcatgcgagggtgaattcgcttgtatattagtaaaaggcgagttccgtgtcaaggtagagaatagacgt
638421 638391 638361 638331 638301 638271 638241 638211
NFNKKHNVPYLYFKILFEQTPQLQRLIHRLGVDAYKVQIVLQPEVQSLLRQK*FVFLVLEHNE*RAFQQA*PLHQTRH*H
:: | : |: ||||:|:
AIMGGPAERAQQSLDAGCDMVLMCNKRESAVAVLDQLPISVVPQAQSLLKQQQFTYRELKATERWKQAYQALQRLIDAHS
260 270 280 290 300 310 320
Haemophilus_influenzae_6824_main(577736 - 577647 of 1830138)
Query(146 - 173 of 328)
%Match = 2.2
%Identity = 31.0 %Similarity = 62.1
Matches = 9 Mismatches = 10 Conservative Sub.s = 9
Gaps = 1 InDels = 6 Frame Shifts = 0
Primary Frame = -2 [0, 28, 0]
tggacgttggcgtaaggtgtacaaggactgtggaagcatggcaccttggccatcagcttgagagcatcgtcttagttgcc
agttcagtccagtacaaaggagtttaactgaaaaccactatatagttaaaatagtaaatgaactaattttgtcaggtact
tcgttgtgtattatgaatcgattctaatttctaaagaaacaacctctaacatttctttataactacgcaattattgtagt
577977 577947 577917 577887 577857 577827 577797 577767
YGVIPECLAAHGLNTEEYGWKRIIVEKPFGYDEKTAQTLDVQIHRFFEEHQIYRIDHYLGKETVQNLLVLRFSNGWFEPL
PILIGVDQEGGRVQLSRRVQQDPCAQLYARSDNGTQLAEDGGWLMAAELIAHDIDLSFAPVLDKGFDCRAIGNRAFGDDV
70 80 90 100 110 120 130
tacatagtggaagggtaggggcggttggtggacgatcacttcgtgaggagccgaaagatacggggagacatcctatggag
gagattaatatcgcactgtaagggaaagcgctgattaaattattcttctacccttacactgaatcattagtgctccaata
gcttctttaatttaattcgagcgctttttcagatgcactagagagggagggagttcgtagttaaaaggttgtaatggtgg
577737 577707 577677 577647 577617 577587 577557 577527
WNRNFIDYVEITGAESIGVEERGGYYDGSGAMRDMFQNHLLQVLAMVAMEPPAIINANSMRDEVAKVMHSLRPLTSEDME
: | :|:|: | :: | ||: : :||
QTVLTYSSAYMRGMKSVGMATTGKHFPGHGAV--IADSHLETPYDERDSIADDMTIFRAQIEAGILDAMMPAHVIYPHYD
150 160 170 180 190 200 210
Haemophilus_influenzae_6824_main(652377 - 652324 of 1830138)
Query(135 - 152 of 328)
%Match = 2.2
%Identity = 38.9 %Similarity = 66.7
Matches = 7 Mismatches = 6 Conservative Sub.s = 5
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -1 [18, 0, 0]
gattcctaattagtcttcagttacaacattagttcatctaaccaacaaacgatggtcatacaagcaacagacaaaagaac
cgttaataatttcagttagacttatagcacgattgattctacatacctacatgcctctcccaagttacactccaattaac
cagccgttttgggaagttcactcatagtctcatgctgaaatcacggacgtaataatctaaatggaaattgccctctaaat
652414 652384 652354 652324 652294 652264 652234 652204
ARLFHQFNNFLMA*RLFHSESFIQIKRTYSSEFLRNLLSINPQIKPTIKPEICAAFPISTPNKGLIKPNAIPTNNIVKKP
:| |||| ::| : |:
FAPVLDKGFDCRAIGNRAFGDDVQTVLTYSSAYMRGMKSVGMATTGKHFPGHGAVIADSHLETPYDERDSIADDMTIFRA
130 140 150 160 170 180 190
Haemophilus_influenzae_6824_main(410847 - 410743 of 1830138)
Query(113 - 147 of 328)
%Match = 2.2
%Identity = 28.6 %Similarity = 45.7
Matches = 10 Mismatches = 19 Conservative Sub.s = 6
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -1 [35, 0, 0]
gacataaaactagagaattagagaaggcgcgttcaagtgactgtaatgaatctgaagctgacggccgttaagattcgatg
tccacaaaaatctacacgaggacatcagtgagcctagcctatcgactttttcgtgtcctcccttcctagaacaccgatcg
gatctattggtctgatgaaacgtaataagaaagaatctactttggagtaatgctctatccgatagagttagtacacttta
411073 411043 411013 410983 410953 410923 410893 410863
VTPNSKNNKQFTVKANT**RGKAKIAERVRE*SPINGSAIHFAWKTLVIIFPCVSIAPFATPVVPPVYCKKAKSSRDISG
GVILFARNYHDNQQLLALNTAIRQAAKRPILIGVDQEGGRVQLSRRVQQDPCAQLYARSDNGTQLAEDGGWLMAAELIAH
40 50 60 70 80 90 100
cattcttcacaatcagagtgatttgaattattaaataagctcagattcacgaaattatgtaaattagggatgaaaagagc
gcaggatcttaccgatccggatatgcgttcatccatcatgtcaaggcctgtgtcgtctttacctcatacataccctcccc
aatgataaactttgcctgcttatcccttcattgaagtaataaaatagctgaaagtaagagagttcgaaaattcgactcaa
410833 410803 410773 410743 410713 410683 410653 410623
RTYWRYLPILNTSRNVTACGNLYFGTSFFTYFTTKLTKVRLPKES*SPIRVRITCLTLVLKTTFSKVEAKFDTTTIATAP
: |:|: : | || || | :| :|
DIDLSFAPVLDKGFDCRAIGNRAFGDDVQTVLTYSSAYMRGMKSVGMATTGKHFPGHGAVIADSHLETPYDERDSIADDM
120 130 140 150 160 170 180
Haemophilus_influenzae_6824_main(189372 - 189319 of 1830138)
Query(303 - 320 of 328)
%Match = 2.2
%Identity = 44.4 %Similarity = 61.1
Matches = 8 Mismatches = 7 Conservative Sub.s = 3
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -1 [18, 0, 0]
gcgacagcttacttaaaccttatcgcgttagtaaaccgttttcactccacattgataagatcgaaactccgttcaggcta
ttctatacgctgactttggtaaagaaatgtaatataatagtttactttatgaatcaaatatgcataactactgtatcaat
ggacagagcagtctctccagggcaggagcctgagaagcagggaaacgcaatgcgccacaaacgtggggtgaaaaggaggc
189505 189475 189445 189415 189385 189355 189325 189295
VLAIQMEPCSMRYSIIIRRL*KYREQELCID*IKIQQV*WLLLKPFLLKLS*YVTYKNVKLRANMKQSLQAL*LKVAQ*I
||: :| ||: |||
AIMGGPAERAQQSLDAGCDMVLMCNKRESAVAVLDQLPISVVPQAQSLLKQQQFTYRELKATERWKQAYQALQRLIDAHS
260 270 280 290 300 310 320
Haemophilus_influenzae_6824_main(1332061 - 1332017 of 1830138)
Query(30 - 44 of 328)
%Match = 2.1
%Identity = 53.3 %Similarity = 66.7
Matches = 8 Mismatches = 5 Conservative Sub.s = 2
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -3 [0, 0, 15]
tagattatcttattaactatattaaactttatctccctcatgcatatggcacacttatcatcgcgtaactgtccgcttat
gcgtgcttaatagtaaattttctaatttccaaatattttcacggaactatacttagggattatgtacgttttgtttcagc
ttatctctaatctaaaggatttaggttttatcttttgggagaccctgttaccttaatttttagctacctgtggttgaatc
1332107 1332077 1332047 1332017 1331987 1331957 1331927 1331897
CTGICSIFQ*FNCLKKQLIFISLKKILFSSNYHFHLLLLT*ARSYNSVDLNPIL**SCHIFQVRV*TSLLVLRLVLS*SS
|||: ||| : ||
WLDVEGCELTAEDREILAHPTVGGVILFARNYHDNQQLLALNTAIRQAAKRPILIGVDQEGGRVQLSRRVQQDPCAQLYA
20 30 40 50 60 70 80
Haemophilus_influenzae_6824_main(1824418 - 1824290 of 1830138)
Query(6 - 48 of 328)
%Match = 2.1
%Identity = 25.6 %Similarity = 44.2
Matches = 11 Mismatches = 24 Conservative Sub.s = 8
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -3 [0, 0, 43]
ctctttgaggtcttgcaggaaaccatggtccaacctctggagagtaagaaggccctcggtgacaagagcgaacgtgaaaa
aatagtaacgtcacagaaagttagctccgattaagactactttcgaccgctttcctgcctatcttgctcctacccatcac
ttctctttgacttaacaaatttcataggtgtttattaataggatctagtttgtgtgattttttctgtacttataaaaaga
1824404 1824374 1824344 1824314 1824284 1824254 1824224 1824194
HYLYCFDNAGFPYSERKEESIIHRTLAACQLINQRYPLDAMVIACNTASTVVLPPLRAAFDIPIIGTVPAIKPASEITKT
:| | : | : | |: | : | : ::| |||
MGPLWLDVEGCELTAEDREILAHPTVGGVILFARNYHDNQQLLALNTAIRQAAKRPILIGVDQEGGRVQLSRRVQQDPCA
10 20 30 40 50 60 70 80
acagttga
aatgttcc
atttaata
KHIGLLAT
QLYARSDN
Haemophilus_influenzae_6824_main(1723628 - 1723599 of 1830138)
Query(121 - 130 of 328)
%Match = 2.0
%Identity = 50.0 %Similarity = 80.0
Matches = 5 Mismatches = 2 Conservative Sub.s = 3
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = -2 [0, 10, 0]
tacgagtttcgttcatcctatattttgagttttcgcgaagttaatcagtaaaatttaaccttgggagatatttgaactag
caaagattaggagaaatttgtaaaatagattcgactgaatgccacagcttcaggtcatgtcttcgtatcgctccatcgtc
cggtcgttagaatttacttaatctgtattatctaatgtacaactaataacaaagctgaattggtgttttacattattaga
1723689 1723659 1723629 1723599 1723569 1723539 1723509 1723479
SKQDSEFF*RG*CHN*LLFRLNYY*FESDLFSCQALGNKV*STNSQSALITKRWFSKIRLSLVAGIDISRSLSAKIP*MA
| |:|:||:
QLAEDGGWLMAAELIAHDIDLSFAPVLDKGFDCRAIGNRAFGDDVQTVLTYSSAYMRGMKSVGMATTGKHFPGHGAVIAD
100 110 120 130 140 150 160 170
Haemophilus_influenzae_6824_main(761 - 781 of 984) 7/6/99
Query(266 - 272 of 328)
%Match = 1.7
%Identity = 57.1 %Similarity = 85.7
Matches = 4 Mismatches = 1 Conservative Sub.s = 2
Gaps = 0 InDels = 0 Frame Shifts = 0
Primary Frame = 2 [0, 7, 0]
gaagatggctaagtttattttgtaaagtttgattatgcatgatgtttagcatattttcgctatgtatgagatgaattgtc
aaacttttttattgcaaattatactagtttcttgatttcgcttttccagctatcattcagtcctgttcacggttattcgt
tatgtttttccagtcctatacaaattcaatcttttatcttctttgaaacaaatatattgattacaactcatcattattga
691 721 751 781 811 841 871 901
DKNAIFVVLFNIVCSYN*FLYV*TINGLLFAIFCNLVLTCAIFVLSSKGPI*ISYLFPERFTSV*IFANASCVINLFAWL
|::|| |
GFQGIVFSDDLSMEGAAIMGGPAERAQQSLDAGCDMVLMCNKRESAVAVLDQLPISVVPQAQSLLKQQQFTYRELKATER
250 260 270 280 290 300 310
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