BLAST2 Parameters for Protein

gap open penalty: 9
gap extension penalty: 2
gap x_dropoff: 50
Expect: 10
Protein: On
Matrix: Blosum62

BLAST2 Parameters for DNA

Match reward: 1
Mismatch penalty: -2
gap open penalty: 5
gap extension penalty: 1
gap x_dropoff: 50
Expect: 10
Protein: On
Matrix: blosum62
Kim Worley, Human Genome Center, Baylor College of Medicine Email
Last modified: Tue Dec 3 11:54:38 CST 2002
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BCM HGSC