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Site Search
Start Search Launcher:
- Nucleic Acid Search
- General Protein Search
- Species Protein Search
- Multiple Sequence Alignment
- Pairwise Sequence Alignment
- Gene Features Searches
- Sequence Utilities
- Protein Structure Prediction
Other Services
- BCM Human Transcript Database
- BCM Gene Finder
- BCM Protein Structure Prediction
Choose a type of search from the pull-down menu
TAIR BLASTN Search Parameters
Program: BLASTN 2.0
Database: GenBank, including ESTs & BAC ends
Matrix: BLOSUM62
Expectation Value (E): 10
Nucleic Mismatch: -3
Nucleic Match: 1
Extension Threshold: 0
Word Size: 11
Max Scores: 25
Max Alignments: 15
Gapped Alignments: on
Gap Opening Penalty: 5
Gap Extension Penalty: 2
Query Filter: DUST
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