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Start Search Launcher:
- Nucleic Acid Search
- General Protein Search
- Species Protein Search
- Multiple Sequence Alignment
- Pairwise Sequence Alignment
- Gene Features Searches
- Sequence Utilities
- Protein Structure Prediction
Other Services
- BCM Human Transcript Database
- BCM Gene Finder
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PCWISE Parameters for Protein
gap open penalty: 12
gap extension penalty: 2
PCWISE Parameters for DNA
Compare reverse strand: Off
Compare forward strand: Off
Compare both strands: Off
Report as absolute to truncated/reverse sequence:Off
PCWISE Standard Parameters
Ascii output: On
Show Parameters: On
length of main block in output: 50
Show gene structure : Off
Show summary output : Off
Show cDNA: Off
Show protein translation: Off
Ace file gene structure: Off
Gene Feature Format file: Off
Raw gene structure: Off
Show logical AlnBlock alignment: Off
Show raw matrix alignment: Off
PCWISE Gene Model Parameters
Match type: local
Codon bias: Flat
Splice model or GT/AG: model
Tied model for introns : tied
Random Model: synchronous
Substitution error rate: 1e-05
Insertion/deletion error rate: 1e-05
Kim Worley, Human Genome Center, Baylor College of Medicine
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Last modified: Tue Dec 3 12:04:22 CST 2002
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