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Start Search Launcher:
- Nucleic Acid Search
- General Protein Search
- Species Protein Search
- Multiple Sequence Alignment
- Pairwise Sequence Alignment
- Gene Features Searches
- Sequence Utilities
- Protein Structure Prediction
Other Services
- BCM Human Transcript Database
- BCM Gene Finder
- BCM Protein Structure Prediction
Choose a type of search from the pull-down menu
BCM Search Launcher: Species-Specific Protein Sequence Searches
Cut and paste protein sequence here (raw sequence only; no header, etc.);
Maximum sequence length is 7000 aa.
Sequence name/identifier (optional):
Choose search method / database:
[H]
[O]
[P]
[E]
=
[H]
:Help/description;
[O]
:full Options form;
[P]
:search Parameters;
[E]
:Example search
See Also:
SRS-FastA Subset Search Page
and
BMERC's combined database including
E. coli
TBLASTN /
Actinobacillus actinomycetemcomitans
genome
- query vs. 6-frame translation
with BLASTN 1.4 (OU) [
H
] [
O
] [
P
] [
E
]
BLASTP /
Arabidopsis
Genebank, including ESTs & BAC ends
- NCBI BLAST with gapped alignments (TAIR) [
H
] [
O
] [
P
] [
E
]
TBLASTN /
Arabidopsis
Genebank, including ESTs & BAC ends
- query vs. 6-frame translation
of all finished and unfinished DNA (TAIR) [
H
] [
O
] [
P
] [
E
]
FASTA /
Archaeoglobus fulgidus
pred. coding regions
- (TIGR) [
H
] [
O
] [
P
] [
E
]
TFASTA /
Archaeoglobus fulgidus
genome
- query vs. 6-frame translation of complete
genome (TIGR) [
H
] [
O
] [
P
] [
E
]
TBLASTN / Fungal
(Aspergillus nidulans and Neurospora crassa)
genomes
- query vs. 6-frame
translation with BLASTN 1.4 (OU) [
H
] [
O
] [
P
] [
E
]
BLASTP /
B. subtilis
- BLAST2 search of B. subtilis strain 168 (Pasteur) [
H
] [
O
] [
P
] [
E
]
TBLASTN /
B. subtilis
- query vs. 6-frame translation of complete
B. subtilis strain 168 using BLAST2 (Pasteur) [
H
] [
O
] [
P
] [
E
]
FASTA /
Borrelia burgdorferi
pred. coding regions
- (TIGR) [
H
] [
O
] [
P
] [
E
]
TFASTA /
Borrelia burgdorferi
genome
- query vs. 6-frame translation of complete
genome (TIGR) [
H
] [
O
] [
P
] [
E
]
BLASTP /
C. elegans Wormpep
- complete Wormpep predicted proteins - (Sanger) [
H
] [
O
] [
P
] [
E
]
TBLASTN /
C. elegans
genome
- query vs. six-frame translation using complete
C. elegans
genome sequences (Sanger) [
H
] [
O
] [
P
] [
E
]
WU-TBLASTN /
Campylobacter jejune
genome
- Warren Gish's BLAST with
gapped alignments on 97% of C. jejuni (Sanger) [
H
] [
O
] [
P
] [
E
]
TBLASTN /
Cryptococcus neoformans
genome
- query vs. 6-frame translation with
BLASTN 1.4 (OU) [
H
] [
O
] [
P
] [
E
]
BLASTP /
Drosophila
genome
with BLAST2.0 (NCBI) [
H
] [
O
] [
P
] [
E
]
TBLASTN /
Drosophila
genome
with BLAST2.0 (NCBI) - query vs. 6-frame translation [
H
] [
O
] [
P
] [
E
]
FASTA /
Helicobacter pylori
pred. coding regions
- (TIGR) [
H
] [
O
] [
P
] [
E
]
TFASTA /
Helicobacter pylori
genome
- query vs. 6-frame translation of complete
Helicobacter pylori genome (TIGR) [
H
] [
O
] [
P
] [
E
]
FASTA /
H. influenzae
pred. coding regions
- (TIGR) [
H
] [
O
] [
P
] [
E
]
TFASTA /
H. influenzae
genome
- query vs. 6-frame translation of complete
H. influenzae genome (TIGR) [
H
] [
O
] [
P
] [
E
]
FASTA /
M. genitalium
pred. coding regions
- (TIGR) [
H
] [
O
] [
P
] [
E
]
TFASTA /
M. genitalium
genome
- query vs. 6-frame translation of complete
M. genitalium genome (TIGR) [
H
] [
O
] [
P
] [
E
]
FASTA /
M. jannaschii
pred. coding regions
- (TIGR) [
H
] [
O
] [
P
] [
E
]
TFASTA /
M. jannaschii
genome
- query vs. 6-frame translation of complete
M. jannaschii genome (TIGR) [
H
] [
O
] [
P
] [
E
]
WU-TBLASTN /
Mycobacterium leprae
genome
- Warren Gish's BLAST with
gapped alignments on M. leprae cosmids (Sanger) [
H
] [
O
] [
P
] [
E
]
WU-BLASTP /
Mycobacterium tuberculosis
predicted proteins
- Warren Gish's
BLAST with gapped alignments (Sanger) [
H
] [
O
] [
P
] [
E
]
WU-TBLASTN /
Mycobacterium tuberculosis
genome
- Warren Gish's BLAST with
gapped alignments on complete M. tuberculosis genome (Sanger) [
H
] [
O
] [
P
] [
E
]
TBLASTN /
Neisseria gonorrhoeae
genome
- query vs. 6-frame translation with
BLASTN 1.4 (OU) [
H
] [
O
] [
P
] [
E
]
WU-BLASTP /
S.cerevisiae
NR Protein
- Warren Gish's BLAST with
gapped alignments (Stanford SGD) [
H
] [
O
] [
P
] [
E
]
WU-TBLASTN /
S. cerevisiae
genome
- query vs. 6-frame translation
of complete yeast genome (SGD) [
H
] [
O
] [
P
] [
E
]
WU-BLASTP /
S. pombe
protein DB
- Warren Gish's BLAST with
gapped alignments on current S. pombe protein database (Sanger) [
H
] [
O
] [
P
] [
E
]
WU-TBLASTN /
S. pombe
genome
- query vs. 6-frame translation
of current S. pombe genomic (Sanger) [
H
] [
O
] [
P
] [
E
]
WU-TBLASTN /
Neisseria meningitidis
genome
- Warren Gish's BLAST with
gapped alignments on N. meningitidis assembly (Sanger) [
H
] [
O
] [
P
] [
E
]
TBLASTN /
Staphylococcus aureus
genome
- query vs. 6-frame translation with
BLASTN 1.4 (OU) [
H
] [
O
] [
P
] [
E
]
WU-TBLASTN /
Streptomyces coelicolor
genome
- Warren Gish's BLAST with
gapped alignments on S. coelicolor cosmids (Sanger) [
H
] [
O
] [
P
] [
E
]
TBLASTN /
Streptococcus pyogenes
genome
- query vs. 6-frame translation with
BLASTN 1.4 (OU) [
H
] [
O
] [
P
] [
E
]
TBLASTN /
Streptococcus mutans
genome
- query vs. 6-frame translation with
BLASTN 1.4 (OU) [
H
] [
O
] [
P
] [
E
]
BLASTP /
Synechocystis sp. strain PCC 6803
pred. coding regions
-
(CyanoBase) [
H
] [
O
] [
P
] [
E
]
FASTA /
Treponema pallidum
pred. coding regions
- (TIGR) [
H
] [
O
] [
P
] [
E
]
TBLASTN /
Trypanosoma brucei
genome
- TBLASTN 1.4 search ofTrypanosoma
brucei BAC and P1 End (TIGR) [
H
] [
O
] [
P
] [
E
]
WU-TBLASTN /
Yersinia pestis
genome
- Warren Gish's BLAST with
gapped alignments on Y. pestis shotgun (Sanger) [
H
] [
O
] [
P
] [
E
]
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