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Site Search
Start Search Launcher:
- Nucleic Acid Search
- General Protein Search
- Species Protein Search
- Multiple Sequence Alignment
- Pairwise Sequence Alignment
- Gene Features Searches
- Sequence Utilities
- Protein Structure Prediction
Other Services
- BCM Human Transcript Database
- BCM Gene Finder
- BCM Protein Structure Prediction
Choose a type of search from the pull-down menu
BCM Search Launcher: Protein Secondary Structure Prediction
Cut and paste protein sequence here (sequence only):
Sequence name/identifier (required):
Email address (when required):
Choose search method:
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[O]
[P]
[E]
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[H]
:Help/description;
[O]
:full Options form;
[P]
:search Parameters;
[E]
:Example search
Coils
- prediction of coiled coil regions (ISREC) [
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nnPredict
- uses a 2 layer neural network (UCSF) [
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PSSP / SSP
- segment-oriented prediction (Sanger) [
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PSSP / NNSSP
- nearest-neighbor prediction (Sanger) [
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SAPS
- statistical analysis of protein sequences (ISREC) [
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TMpred
- transmembrane region and orientation prediction (ISREC) [
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SOSUI
- Classic and membrane prediction (TUAT) [
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Paircoil
- coiled coil regions of pairwise residue correlations(MIT) [
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Protein Hydrophilicity/Hydrophobicity Search
- Calculates hydrophilicity,
plots the hydropathic profile and fourier transform (Weizmann Institute) [
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SOPM
- self optimized prediction method (IBCP-CNRS) [
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The following servers return search results via Email:
PHDsec
- profile network method (EMBL, Email search) [
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PSA
- for single domain globular proteins (BMERC, Email search) [
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Swiss-Model
- from alignment to crystallographic data (ExPASy, Email search) [
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