RepeatMasker repeats found in sequence:
SW perc perc perc query position in query matching repeat position in repeat
score div. del. ins. sequence begin end (left) repeat class/family begin end (left)
229 26.8 0.0 0.0 ECOPGSA 789 844 (112) + tRNA-Lys-AAG tRNA 8 63 (13)
Alignments:
229 26.79 0.00 0.00 ECOPGSA 789 844 (112) tRNA-Lys-AAG#tRNA 8 63 (13)
ECOPGSA 789 TAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCG 838
i i vvi vii vv i i i
tRNA-Lys-AAG#tR 8 TAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 57
ECOPGSA 839 AGTCTC 844
i i
tRNA-Lys-AAG#tR 58 AGCCCC 63
Transitions / transversions = 2.00 (10 / 5)
Gap_init rate = 0.00 (0 / 56), avg. gap size = 0.00 (0 / 0)
Masked Sequence:
>ECOPGSA
GATCTTCTGGTCGTTGAAACATTGATGTCTCTGTAGCAACATAGGGGTAA
TCTTACTGACAACAGATAGTTACCCGTCATTATGCAATTTAATATCCCTA
CGTTGCTTACACTGTTCCGTGTCATCCTTATCCCATTCTTTGTATTGGTC
TTTTATCTGCCTGTCACCTGGTCGCCGTTTGCCGCCGCGCTCATTTTCTG
CGTCGCGGCGGTGACTGACTGGTTCGATGGTTTTCTGGCACGCCGCTGGA
ACCAGAGTACCCGGTTTGGTGCTTTCCTTGACCCTGTGGCAGATAAAGTT
CTCGTGGCTATCGCCATGGTGCTGGTAACCGAGCATTATCACAGCTGGTG
GGTGACATTACCGGCGGCAACGATGATCGCCCGTGAAATTATTATTTCTG
CGCTACGCGAATGGATGGCGGAGTTGGGTAAACGCAGTAGCGTGGCCGTC
TCCTGGATTGGGAAAGTGAAAACCACTGCCCAGATGGTGGCGTTGGCATG
GCTGCTGTGGCGTCCGAACATTTGGGTTGAGTACGCCGGTATTGCACTTT
TCTTTGTGGCTGCGGTACTGACTCTGTGGTCAATGTTGCAATATTTGAGC
GCTGCGCGTGCAGATTTGCTTGATCAGTGATCGTTTCGGCGTAATTTTCA
GCAAACGATCAAAAGTGGTGAAAAATATCGTTGACTCATCGCGCCAGGTA
AGTAGAATGCAACGCATCGAACGGCGGCACTGATTGCCAGACGATAATAA
AATCAAGTGATTAACTGATTGCTTGATGAATGCGGGAANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTCC
CGCTCCAGTTTAAAAGACATCGGCGTCAAGCGGATGTCTGGCTGAAAGGC
CTGAAGAATTTGGCGCGTTAACAAAGCGGTTATGTAGCGGATTGCAAATC
CGTCTA
Summary:
==================================================
file name: /repeatmasker/tmp/RM2seq
sequences: 1
total length: 956 bp
GC level: 49.90 %
bases masked 56 bp ( 5.86 %)
==================================================
number of length percentage
elements* occupied of sequence
--------------------------------------------------
SINEs: 0 0 bp 0.00 %
ALUs 0 0 bp 0.00 %
MIRs 0 0 bp 0.00 %
LINEs: 0 0 bp 0.00 %
LINE1 0 0 bp 0.00 %
LINE2 0 0 bp 0.00 %
LTR elements: 0 0 bp 0.00 %
MaLRs 0 0 bp 0.00 %
Retrov. 0 0 bp 0.00 %
MER4_group 0 0 bp 0.00 %
DNA elements: 0 0 bp 0.00 %
MER1_type 0 0 bp 0.00 %
MER2_type 0 0 bp 0.00 %
Mariners 0 0 bp 0.00 %
Unclassified: 0 0 bp 0.00 %
Total interspersed repeats: 0 bp 0.00 %
Small RNA: 1 56 bp 5.86 %
Satellites: 0 0 bp 0.00 %
Simple repeats: 0 0 bp 0.00 %
Low complexity: 0 0 bp 0.00 %
==================================================
* most repeats fragmented by insertions or deletions
have been counted as one element
The sequence(s) were assumed to be of primate origin.
RepeatMasker version 05/05/99 default
ProcessRepeats version 05/05/99
Repbase version 3.04
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