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Site Search
Start Search Launcher:
- Nucleic Acid Search
- General Protein Search
- Species Protein Search
- Multiple Sequence Alignment
- Pairwise Sequence Alignment
- Gene Features Searches
- Sequence Utilities
- Protein Structure Prediction
Other Services
- BCM Human Transcript Database
- BCM Gene Finder
- BCM Protein Structure Prediction
Choose a type of search from the pull-down menu
BCM Search Launcher: Sequence Utilities
Cut and paste
formatted
sequences here (
Most ReadSeq formats accepted
);
All sequences must be in the same format type (e.g., Fasta format)
Choose utility:
[H]
[O]
[P]
[E]
=
[H]
:Help/description;
[O]
:full Options form;
[P]
:search Parameters;
[E]
:Example search
ReadSeq
-converts nucleic acid/protein sequences to FASTA format (BCM) [
H
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O
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P
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E
]
[other formats available]
RepeatMasker
-identify and mask repeats in DNA sequences (UW) [
H
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O
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P
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E
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Primer Selection
-PCR primer selection (Alces) [
H
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O
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P
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E
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WebCutter
- restriction maps using enzymes w/ sites >= 6 bases (M.Heiman) [
H
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O
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P
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E
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[other enzyme and number of sites options available]
6 Frame Translation
- translates a nucleic acid sequence in 6 frames (BCM) [
H
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O
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P
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E
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Reverse Complement
- reverse complements a nucleic acid sequence (BCM) [
H
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O
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P
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E
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Reverse Sequence
- reverses sequence order (BCM)
Sequence Chopover
- cut a large protein/DNA sequence into smaller ones with certain amounts of overlap (BCM). [
H
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O
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P
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E
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HBR
- finds E.coli contamination in human sequences
(BCM Gene Finder)
[
H
] [
E
]
HGSC
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FAQ
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